Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->AHL20(2)               --------->YAB1            <---------ICU4         --------->YAB1     <---------YAB1    <---------AHL20(2)    --------->AHL20(2)            --------->WOX13(1) ------->AHL20(2)                --------->AHL20(2) --------AHL20(1)                <---------AHL20(2)                   <---------AHL20(2)            < ------->AHL20(1)      --------->AHL20(2)                             --------->AHL20(2)       ------ --------AHL20(2)  --------->AHL20(2)                                 --------->YAB1           <----- ------>AHL20(2)   <---------AHL20(2)                              --------->YAB1              <----- -------AHL20(2)  --------->AHL20(2)                              <---------YAB1               ------ -->ICU4 --------->AHL20(2)     --------->AHL20(2)              ----------->GT1               ------- >AHL20(2) --------->ICU4<---------YAB1             --------->At4g35610   ----------->GT1     <------ >YAB1--------->YAB1   --------->YAB1         ------->TEIL      --------->YAB1        ----------->GT1   ttaaattttaataaaaattataaaattataaaaaataaatcaaaaatgaatattatctgaaatgaattgtaataatatgttatatgtatagaaaaattaa  3561200                                             --------->ARR11(3) -----------GT1                     <---------AHL20(1) --->AHL20(1)                 --------->TOE1(3)                               --------->MYB52(1) ----AHL20(1)                 --------->TOE2(3)                            --------->YAB1           - ----AHL20(2)                ----------->GT1 <---------ARR11(3)           <-------TEIL            --- --->AHL20(2)           <---------------AtSPL3                        ------->TEIL                === -->AHL20(2)            <---------------AtSPL8                     <---------YAB1      --------->CCA1(2) ---AHL20(2)            --------------->AtSPL8<------ZmHOX2a(2)<---------WOX13(1) ---------->DOF2 ===   attttccatgttttgttttttgtaagatagtacgttaatatatgtaagatcaaatttcatacatgactgatgaatgttcataacgaaagataagaagagt  3561300                ------>MYB46(1)                ------>MYB83               ----------->RAV1(1)          --------->At4g35610          <---------At4g35610       --------->At4g35610    --------->At4g35610    <---------MYB52(1)    <---------At4g35610<---------MYB52(1)               ------>ZmHOX2a(1) ---------->HVH21 ----------->RAV1(1)           <------ZmHOX2a(1)            <---------ZAT6 -------->RAV1(2)--------->MYB46(3)      <---------MYB46(3)              <---------YAB1 =============================RAV   <---------LBD16 <---------ARR14(2) <---------ICU4 ==========================RAV  <---------GLK1(2)   --------->ARR14(2)--------->ICU4  <---------GLK1(1)   acctgaagctgcagcaccaacaacagttcgtttggaatctcggatgttgaggacaatcctcgtcttgaagccattatgagtgttatagaattcagagaga  3561400                                                                                               ------                                                                                              -------                                <-----------RAV1(1)                                          --------                        <---------ZAT2                                                      <--------                        <---------At4g35610                                              --------->GLK1(1)                 <---------At4g35610                                                     <---------GLK1(1)                 --------->At4g35610       <---------ZAT6            ----------->GT1  <---------TOE2(3)    <---------YAB1   ---------->DOF2  <----------DOF2      <---------ALFIN1      ------>ZmHOX2a(1)   gacatgttgatagctcgtaagctcaaagctgctaatgtcgcattagtgtcaagaacaattcccacttgaacttgtaaaacttcctgttgagatttcccga  3561500                                                                                       --------->ATHB12                                                                                       <---------ICU4                                                                                      <---------YAB1                                  <---------TOE2(3)                                 <---------ANAC58                                 --------->DAG2            <---------WOX13(1)       <---------AtLEC2 --------->ZAT6           --------->ANAC58               --------->ATHB12           <---------ANAC58 --->LBD16                --------->ANAC46  --------->ANAC58                  <---------TOE2(3) -->LBD16                 --------->ANAC58  --------->ANAC58     ---------->DOF2<------------CBF  <-- ->HSFB2a(2)            ---------->DOF2  --------->ZAT18<---------YAB1        <---------YAB1      === -LBD16     ----------->GT1     ---------->DOF2  --------->CCA1(2)     <---------MYB59--------->ICU4   gtaatactaagaagttgataaaaaataaaagccataaaggaagagcacgagatagaagatgattgaataaagacataactaagattgcatgattacaaga  3561600                                                                 <-----------RAV1(1)                                                         --------->AHL20(1)                                                         --------->AHL20(2)                                                         <---------AHL20(2)                                                     <---------AHL20(2)                                                     --------->AHL20(2)                  <---------AHL20(2)           <---------At4g35610                 --------->AHL20(2)            --------->LBD16 --------->ANAC55(2)       <------ZmHOX2a(2)                   --------->ARR14(2)  <---------ANAC55(2) ----ZmHOX2a(1)  <---------AHL20(2)        <---------ARR14(2)<-----------GT1      --------->ZAT18 =============HOX2a_HOX2a              ------------>CBF  <---------AHL20(1)  <---------AtLEC2   ggagagacgatcgagataaataaatagatagttttgaagagaccaattccgcttattaattaattacctgttggaatttgcaagtagactattagtttaa  3561700                                ---------->DOF2                       ----------->GT1                     <------------CBF                                         <---------DOF5.7(2)  ==                   --------->ICU4       <---------ANAC46                    --------->DOF5.7(2)    --    <----------DOF2<---------YAB1  --------->YAB1                 --------->ICU4        -------------   tacatactttatacttaagagataattgttaatacaaagatgatgtatagagaagacttgttttggtcattttggatagttaacgcgttactcaaatgag  3561800      --------->ALFIN1    <---------ANAC58    <---------TGA1a    --------->O2                                                 --------->MYB46(2)    <---------O2                                  <---------ICU4 --------->MYB52(2)    <---------ANAC58                              --------->ATHB12      ---------->DOF2    <---------bZIP60(2)                           <--------HAHB4 ----------->GT1    <---------ANAC46                             <---------YAB1<---------MYB52(1)   --------->ZAT18-- =============bZIP_DOF ------------>CBF          --------->ICU4<--------P           <---------ZAT18-- -------->DOF2<---------HSFB2a(2)              --------->YAB1<---------MYB46(3)---------->DOF2     <- -->AGL15     --------->HSFB2a(2)          ----------->GT1   ----------->GT1--------->TOE1(3)      <-   gcaaagacgtggtcttccaaaaacatacaatataggtgatacaaatggataatcatttgtgaatggttagttaataaagcttaaagagcacataaactgg  3561900                 <------MYB46(1)            <---------YAB1            <---------TOE2(3)       --------->YAB1       --------->ATHB51       <---------ICU4       <--------HAHB4                              <---------AHL20(1)       <--------ATHB1               <---------ANAC58      --------->ICU4                <---------ANAC58      <---------ATHB12              <---------ANAC46    --------->YAB1      <---------ATHB51          <-------GAMYB------->TEIL ------->At4g35610      <---------ANAC58 --------------->AtSPL8 ------->ZAT2    <------MYB83  --------->MYB52(2)  --------->ARR11(3) --------At4g35610      <---------ANAC58 <---------------AtSPL8 --------ZAT2--------->ATHB12  <---------MYB46(3) <---------CCA1(2)      ---------->DOF2   --------->ARR11(3)   aagctgcaataattaagattggtttgacttggtttgttgagtgaatgtactcatatattgataagattccacattgaaaggaaatagactgaatatcacg  3562000                                                                         --------->YAB1                            <----------ID1                             <---------YAB1              <---------------------WRI1                       ----------->GT1              <---------TOE2(3)                               --------->DAG2            ----------->HVH21                      --------->YAB1   --------->ICU4      --------->ANAC58     --------->MYB52(1)  --------->DAG2           <---------ATHB12  <---------YAB1      --------->ANAC46   <---------MYB52(2)   ---------->DOF2   <---------MYB52(2)---------->DOF2             --------->ANAC58   aagtgactaacggtttgacgaaaaaaaaaagggactaaaatcccactaacaaatcatattggaaaaggttattattaataagtctctcacaagcctttgg  3562100  Previous    Next  AGI:  At5g11180.1    Description:  ATGLR2.6 (Arabidopsis thaliana glutamate receptor 2.6). Identical to Glutamate receptor 2.6 precursor (GLR2.6) [Arabidopsis Thaliana] (GB:Q9LFN8); similar to ATGLR2.5 (Arabidopsis thaliana glutamate receptor 2.5) [Arabidopsis thaliana] (TAIR:AT5G11210.1); similar to ATGLR2.4 (Arabidopsis thaliana glutamate receptor 2.4) [Arabidopsis thaliana] (TAIR:AT4G31710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63106.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63113.1); contains InterPro domain Extracellular ligand-binding receptor (InterPro:IPR001828); contains InterPro domain Ionotropic glutamate receptor; (Inte Range:  from: 3557262    to: 3561576    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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