Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <--------P                                                        ----------->GT1                                                        <---------MYB46(3)                                                     <---------ZAT2                                                     --------->ZAT2                                                     <---------At4g35610                                                    --------->ARR14(2)                                                    <---------ARR14(2)         <---------TOE2(3)                                                --------->At4g35610            <---------TOE1(3)                                                <---------At4g35610  <---------ARR14(2) ----------DOF2                                 --------->ZAT2   <---------HSFB2a(2)     <---------ARR11(3) ---->DOF2                   <---------WOX13(1) <---------ZAT2  ------>ZmHOX2a(2)       <---------GLK1(1)   agctttatttgctaataaacagaagagtctgatggataacttgagaactcagcagagctggttagatcgcgaaatcggattagggtttcgaaatctctga  3552700                       <-------TEIL                      ----------->GT1                    <---------At4g35610                 <---------YAB1                    --------->ZAT2                    --------->ARR14(1)                    --------->At4g35610              <---------ARR14(2)              <---------ARR11(3)                     --------->ARR11(1)              <-----------ARR10                      --------->ARR11(3)              --------->ARR11(3)                     --------->ARR14(2)                     <--------             --------->RVE1(1)                       <---------ARR11(3)                 <---------YAB1             --------->CCA1(1)                   ---------->DOF2                        <---------AHL20(2)     ----------->GT1<---------ZAT2     ---------->DOF2--------->CCA1(2)                 --------->AHL20(2)   attgcaagagtaaaaatatctgagcttcgtccaaacgattccaaagagagtgaaagatatggttgaactcagtctaaattgggttttgttttaattaatg  3552800                                                         --------->TOE2(3)                                                       --------->AHL20(1)                                                       <---------ARR11(3)                   ------>ZmHOX2a(1)                   --------->ARR11(3)              <---------ANAC58                         <-----------ARR10              <------MYB83                            --------->CCA1(1)              <------MYB46(1)             <---------TOE2(3)                                   -------              <---------ANAC58         <---------YAB1 --------->RVE1(1)                       <------             <---------MYB46(3)      <---------------AGL15                              <----------DOF2         <-----------RAV1(1)        <---------YAB1--------->AHL20(2)                  <---------ZAT18 -AHL20(2)   --------->MYB59      ----------->GT1----------->GT1                      --------->ZAT18   ggcctacaattttgttgggtccttgaaacaaaaacattgttattaagggaaatgaaatatcttaactaaaccaatttgttatctattgtgctctactgtt  3552900                                                                                  <----------ID1                                                                          ----------->GT1                    --------->ANAC46                                    ---------->DOF2                   ------>MYB83             <---------MYB52(1)       ------>MYB46(1)                   ------>MYB46(1)     <---------WRKY18(1)           ------>MYB83 ----------->GT1 -->ZAT14       --------->DEAR3(2)    --------->WRKY12            --------->DEAR3(2) ---ZAT14      --------->PCF2         ----------->HVH21          --------->PCF2 ---------->DOF2     -   ctgttcgtattgactcgaacccactaaaccaagacgagccctgaccgtcattgtctaaattgactcgaacccactaaagaaaaaaagaaaaaaaaactta  3553000           <------NtERF2           <-----------RAV1(2)         <---------ANAC46                                                                         ---   <--------ATHB1                                                                                 ---   -------->HAHB4                                                                                 ---   --------->ATHB12                                                                             <----   <---------ICU4                                         <------------CBF                  <--------   --------->ATHB51                      --------------->AGL15                         <---------ARR11(3)  --------->ICU4                  <----------DOF2  ---------->DOF2                     <---------AHL20(1)  <---------YAB1            --------->YAB1     <---------TOE2(3)      --------->ARR14(2)    ---------  <---------ATHB51       --------->YAB1  <---------------AGL15        <---------ARR14(2)<---------AHL20(2) -------->YAB1          --------->AHL20(2)    ---------->DOF2      ------->GAMYB       --------->ARR11(3)   gataataattggcgcagaagggccgattaataaaaactttaggcccattaaagtaaagcttattgtcaaccctatccagtctccttgtatatatttattt  3553100                                                                                 <---------At4g35610                                                                            -------->P                                                                            ------>MYB46(1)                                                                            ------>MYB83                                                                          --------->AtMYB61                                                                          ------->GAMYB                                                                         <---------MYB55(2)                                                                         <---------MYB52(2)                <------MYB46(1)                                          --------->MYB46(3)             <-------GAMYB                                              --------->ANAC58            <---------DEAR3(1)                                          --------->ANAC58         <---------DEAR3(1)                                             --------->ANAC46        <---------LBD16                                                 -------->P      ------>MYB46(1)                                                   ------>MYB83      ------>MYB83*TSS                                                  ------>MYB46(1)    --------->DEAR3(1)                                              =========================HOX2a_HOX2a    --------->AtMYB61 <-------TEIL                                  <------ZmHOX2a(2)             ---  ------>NtERF2 <------MYB83                                       --------->AGP1--------->At4g35610 ------>ANAC46  <---------MYB46(3)                                 <---------ARR11(3)         ------- ------>ANAC58 <---------AtMYB61                                   <---------ARR14(2)        <------- ------>ANAC58 <---------DEAR3(1)         --------->GLK1(1)        --------->ARR14(2)        <------- -------GT1 <---------ANAC46             --------->ARR11(3)     <---------HSFB2a(2)         <-------- -AHL20(2) <------NtERF2          <-----------HVH21             --------->HSFB2a(2)    <---------CCA1(2) >AHL20(2) ------>NtERF2       --------->ZAT14     --------->TOE2(3)--------->CCA1(2) ------>ZmHOX2a(1)   acgacaccaacgcggcgttggtgattcattctcttcagtcagagatttcgaaaccctagtcgatttcgagatccaaccaactctgctccttatctcaggt  3553200                                                                                                    -                                                                                                    -                                                                                                 ----                                                                        <---------TOE2(3)       -----                                                             ------->TEIL        --------->ARR14(2) <                                                  <----------DOF2 <---------TOE1(2)             ----- -------->ARR10                    >>>>>>>>>>>>>>>>>LFY     <---------GLK1(2)    <---------ARR14(2) < ---->GT1              <---------ANAC58          <---------ANAC58 <---------TOE2(3)             ----- --TOE2(2)--------->HSFB2a(2)      <<<<<<<<<<<<<<<<<LFY------>ZmHOX2a(1)<---------TOE1(3)       ----- --TOE1(2)<---------HSFB2a(2) ---------->DOF2    <---------ANAC58 <---------TOE1(3)          -------- ---RAV1(2)            <---------ANAC58      <---------At4g35610  <---------TOE2(2)    <---------GLK1(2)   aaaattctcgctcgagaactcaattgcttatccaaagttccaatggaagatgctttcctactgaatcttaggttaatgttttggatttggaatcttaccc  3553300           <---------ZAT2                                             --------->ARR11(3) -------->HSFB2a(1)                                                  --------->GLK1(1) -------->HSFC1(2)                                                   <---------GLK1(1) ----->LBD16                                                     --------->ALFIN1 ---->ANAC58                                                    <------ZmHOX2a(1) ---------HSFB2a(1)                                         <---------TOE1(1) ---->LBD16<---------At4g35610                              <---------TOE2(1) ---------HSFC1(2)                                <---------------------WRI1                       <- ---->ANAC46                                     --------->MYB52(1)<------ZmHOX2a(1)               -- ---->ANAC58                           --------->ANAC58  --------->TOE2(2)                         <- >P     <---------At4g35610            --------->ANAC58  --------->TOE1(2)            >>>>>>>>>TBF1--   gaaatttctctgcagcttgttgaatttgcgaagtatgggagacgctagagacaacgaagcctacgaggaggagctcttggactatgaagaagaagacgag  3553400           <---------HSFB2a(2)           <---------HSFC1(1)           --------->HSFB2a(2)          <---------LBD16        --------->GLK1(2)           --------->At5g28300            ------>ZmHOX2a(2)       --------->ARR14(2)           --------->LBD16              <---------ARR14(2)       <---------ARR14(2)          <---------ANAC46              <---------AGP1       <---------GLK1(2)      ---------->DOF2                    --------->ARR14(2)     <---------TOE1(2)      --------->At5g28300               ------>ZmHOX2a(1)                    <- --------HSFC1(2)       --------->MYB52(1)--------->DAG2 --------->GLK1(1)                         <- ------->HSFB2a(1)      <---------DOF5.7(2)            --------->ATHB12                    <---------AHL20(2) --------HSFB2a(1)    --------->DOF5.7(2)---------->DOF2 <---------GLK1(1)                 --------->AHL20(2) ------->HSFC1(2) ---------->DOF2  ----------->GT1    <---------YAB1                    ----------->GT1   aaggtcccagattctggaaacaaagttaacggtgaagccgtgaaaaagtgagttttatgatttcctcgatctgtttcatgagatagtggatgtttaaatt  3553500                                ------>MYB83                         <---------ANAC58                                ------>MYB46(1)                      <---------ANAC58                              --------->DREB2C(2)               --------->MYB111(1)                              ------->GAMYB                     <---------MYB46(3)                              --------->DEAR3(1)                --------->MYB52(2)                             --------->MYB46(3)                 --------->MYB46(2)                             --------->DEAR3(2)               <--------P                            --------->MYB52(1)                <---------MYB52(1)                           ------->GAMYB                    <---------MYB46(3)    <---------YAB1                          --------->MYB46(3)                <------MYB46(1)     --------->YAB1                   <---------WOX13(1)          --------->AHL20(2)<-------GAMYB <---------YAB1 --------TOE1(3)  <---------ANAC58    --------->ARR11(3)    <------MYB83   <----------DOF2    ------- --------TOE2(3)  <---------ANAC58    <---------ARR11(3)   --------->MYB59 <---------DAG2     <------   tagggttttcttagattactgcttgataacaaccgactaagttcttcaattatctatgtgtttggttagttgcttaactttatgacaattgactaagttc  3553600  Previous    Next  AGI:  At5g11170.1    Description:  DEAD/DEAH box helicase, putative (RH15). Identical to DEAD-box ATP-dependent RNA helicase 56 (RH56) [Arabidopsis Thaliana] (GB:Q9LFN6;GB:Q93VJ8); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT5G11200.1); similar to unknown [Populus trichocarpa] (GB:ABK93079.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ53423.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ64969.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPr Range:  from: 3553118    to: 3556978    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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