Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------MYB46(3)                                  <---------ANAC58                                  <---------ANAC58                              <---------MYB52(1)                      --------->ANAC55(2)                      <---------ANAC55(2)                                           <-----------ARR10                      <---------HSFB2a(2)<---------YAB1                           --------->LBD16                      --------->HSFB2a(2)----------->GT1                      <---------ARR14(2)                   <---------MYB52(1) ----------->HVH21                       --------->ARR14(2) ---------YAB1    <-------GAMYB   <-------GAMYB                              <---------GLK1(1) ---->YAB1 <---------ICU4   --------->ATHB12         --------->YAB1      ----------->GT1            - ---->TOE2(3) ------------>MYB.PH3(1) ----------->TGA1          --------->ATHB12<---------LBD16  ----   ttattaatctgaatcaataccgttacagaaccattgggttgtgacgataaaacaaacaaaataaaaccattggaaatgtaaatccggctcttggcaaaac  3524300                                                                                            <--------                                                                                            <--------                                                                                          <------NtERF2                                                                                          <---------At4g35610                                                                                     --------->ALFIN1                                                                                     ----------->HVH21                                                                                    <-------MYC2                                                                                    ------->MYC2                                                                                    ------->MYC3                                                                                    <-------MYC4                                                                                    <-------PIF5                                                                                    <-------MYC3                                                                                    ------->MYC4                                                                                    ------->PIF5                                                                                    -------->ABF1                                                                                   ==================                                                                                   >>>>>>>>>>HY5                                                                                   ==================                                                                                   >>>>>>>>>>ABI5                                                                                   <---------ANAC55(2)                                                                                   --------->ANAC55(2)                                                                                   ==================                                                                                   <---------TGA1a                                                                                   >>>>>>>>>>AtMYC2                     --------->ICU4                                         --------->YAB1<---------ZAT2                --------->ANAC55(1)                                <----------DOF2 <---------O2                --------->ANAC55(2)                             <---------ARR11(3) --------->TGA1a                --------->ANAC46                                --------->ARR11(3) <---------bZIP60(2)                --------->ANAC58                            ----------->HVH21      --------->O2   <--                <---------ANAC55(2)                       --------->ZAT2    <---------ICU4--------->At4g35610                --------->ANAC58        <---------ZAT18   --------->At4g35610     >>>>>>>>>>>>AtMYC2 ------>GAMYB <-----------GT1  <----------DOF2   ------>ZmHOX2a(1) ==========================bZIP_DOF ----->MYB52(1)<---------TOE2(3)    <---------LBD16       <---------At4g35610 ----------->HVH21  <---   aacgggcaatggcaatttacgtaattatctaaactttctctgggtactctcctacttaagagctgacatctttcttagtcatgacacgtggcagcttttt  3524400     ------>NtERF2                             ------>ZmHOX2a(2)              --------->RAP2.6(2)    --------->RAP2.3(3)                       <------ZmHOX2a(2)       ----------->GT1 ------->GAMYB                               --------->ARR14(2)      --------->ANAC58 -DAG2<------NtERF2                        <---------MYB46(3)        --------->ANAC58 --DOF2  ---------->DOF2                 <---------MYB52(1) <----------DOF2   ------->GAMYB ==bZIP_DOF                            <---------MYB46(3)--------->GLK1(2)    --------->DEAR3(1) ==bZIP_DOF                          <---------At4g35610<---------GLK1(2)  --------->ARR14(2) ========MYC_MYB                <---------At4g35610     --------->ARR14(2) <---------ARR14(2) ---------GT1                   --------->At4g35610------->TEIL     --------->RAP2.6(3) --------GT1                <-----------HVH21<---------ARR14(2)    --------->MYB52(1)   ----------->GT1   taactgcccccaaaagcattccctctgatttgtcatctcagccgttggatccgaacccgattcttttcgaaacggcaaaaccgcctcaaattgaaaaaca  3524500                    --------->YAB1        --------->AHL20(2)                                                 <---------MYB59        <---------AHL20(2)                                                 --------->TOE2(3)       --------->AHL20(1)                                       XXXXXXXXXXXXXXXXXXXXX>MIR848       <---------AHL20(1)                                     ----------->RAV1(1)            <-------       <---------AHL20(2)         --------->TOE2(3)          <---------ETT(1)                <-------       --------->AHL20(2)       <-------TEIL                 --------->ANAC46               --------- ----------->GT1    --------->TOE2(3)      ----------->GT1-------->P      <---------ANAC55(2)<-------   aattagtaatttattttgctaaccatagttaagtttcattaaccatggttaaatttgactaacccgacatagaaatacctaaatttcgaaaatggtcaaa  3524600                                                                                          <---------MYB52(1)                                                                                       ------>MYB46(1)                                                                                       ------>MYB83                                                                                     --------->AtMYB61                                                                                    --------->MYB46(3)                                                                                   ------>MYB83                                                                     <------MYB83  -------->P                                                         ------>ZmHOX2a(1)         ------>MYB46(1)                                                         --------->LBD16         *TSS------->GAMYB                                                        --------->TOE1(2)        --------->AtMYB61                   <------------CBF                    ----------->RAV1(2)       <---------MYB59     ------->TEIL <---------ICU4             --------->AHL20(2) --------->ANAC58--------->MYB46(3) --WRKY45         --------->ATHB12  <----------DOF2  --------->ARR14(2)         --------->DEAR3(2) --WRKY38(1)<---------AHL20(2)   --------->ANAC58    <---------ARR14(2)      <---------SPL7 >WRKY18(1) <-----------GT1      --------->ANAC58 --------->MYB59    <------MYB46(1)<---------MYB55(2) --WRKY12------->TEIL    <------------CBF   ----------->TBP     --------->ANAC58<---------MYB55(2)<--   gtctttgaacgtatttacatttattgccattgaacaagcttttgctataaattcggttcctgagactcgctaggtttgccgaaccaacctcccttaggca  3524700                 --------->YAB1                                                           --------->AHL20(2)           <---------At4g35610                             ------>ZmHOX2a(1)      <xxxxxxxxxxxxxxxsmallRNA(le3)           --------->At4g35610                       <<<<<<<<<TBF1             --------->YAB1 --------DOF2   <---------ATHB12        <------------------------ANAC81     <----------DOF2    ------   ctttctacagagcagctaatcaaaaaaaaaaaaaaaaaaccttgttcttctcttcttcttcctctctcacaaatttgactttcatagaagaaaaaaatgg  3524800                                                                                               <-----                                                                                            <--------                                                                                          <---------ANAC58                                                                         <---------ARR14(2)<---------                                                                        <-------GAMYB     <---------ANAC58                  --------->ANAC58                    <-----------RAV1(2)--------->ARR14(2)<---------                  --------->ANAC58                   <---------MYB52(1)--------->MYB55(2) --------->ANAC55(2)              ------->TEIL                       <---------At5g28300   ----------->GT1 <---------MYB52(1)           --------->ANAC58       <---------MYB46(3)<-----------HVH21  <---------MYB46(3) <---------ANAC55(2)           <---------MYB52(2)     --------->ABI4(2) <-----------TGA1  <---------AtMYB61--------->ARR14(2)       <-----------HVH21        <---------MYB52(1) --------->DEAR3(1) --------->ALFIN1 <---------ARR14(2)       <-----------TGA1--------->MYB52(1)       --------->YAB1     <---------DEAR3(1) <---------RAP2.6(3) ----->GT1 --------->ANAC58 --------->MYB52(1) --------->MYB46(3) <---------LBD16     <---------SPL7   tgactacatcgtcacgaaccaagtcaaacggaccggtgcttcgttcacaatcaccgtcaggtcgattttgcggtggttactcaagagccgttccgtcatc  3524900                                                      <----------DOF2                                                      <---------DAG2                                                    --------->At4g35610                                                    <---------At4g35610<-----------TGA1                                                <-----------HVH21      <-----------HVH21                                                <-----------TGA1      --------->ANAC46              -                                               --------->TGA1a        --------->DEAR3(1)         ----         ================================================bZIP_DOF   <---------At5g28300          ----       <---------At4g35610                     --------->ETT(2)   --------->MYB46(3)             <---    <---------At4g35610                        ==================bZIP_DOF                       ----- ----At4g35610                          <---------At4g35610   <---------At4g35610           <-------- -MYB52(1)       --------->REM1(1)=======================bZIP_DOF <---------ATHB12      --------->YAB1 --TGA1--------->At4g35610        <----------DOF2<---------MYB52(1)--------->YAB1      <---------ATHB12 --HVH21 <----------DOF2      >>>>>>>ZML2      <---------ETT(2) --------->WOX13(1)   --------->WOX13(1)   ttcttcatcagctttcgcttcatcaacgagttctagcttttcatctccgtcgtcagcttttttcagcaatcaccgtcatcacgagagcaatcacagtcac  3525000                  <---------TGA1a                  --------->O2             --------->DEAR3(1)             --------->MYB46(3)                                                             ------>NtERF2            --------->DEAR3(2)                                                        <---------ARR11(3)        <-----------HVH21                                                             --------->ARR11(3)        <-----------TGA1                                                             <---------CCA1(2)       --------->ANAC46                   --------->MYB46(3)                      ------>ZmHOX2a(2)    ------>ZmHOX2a(2)                     --------->DEAR3(2)                     <------ZmHOX2a(2)   <------ZmHOX2a(2)                  <---------ZAT18                           --------->ARR14(2)  --------->ARR14(2)                --------->At4g35610                         <-----------ARR10  <---------ARR14(2)     ------->TEIL--------->ANAC46                           --------->ARR11(3) -------->DEAR3(1)--------->TGA1a --------->ANAC46                              <---------ARR11(3) ----->AtMYB61    <---------O2  <---------ALFIN1                                <---------ARR14(2) ----->DEAR3(1)------>MYB83    --------->ZAT14                <---------MYB52(1)<---------AGP1 ------ALFIN1--------->DREB2C(2)--------->ANAC46            <---------ANAC58    --------->AGP1<------ ---->MYB46(3) ------>MYB46(1) <---------REM1(2)            <---------ANAC58   <---------CCA1(2) ---HVH21----------->HVH21     <---------ZAT14           <---------MYB52(1) <---------At4g35610 -----   caccgatctgcgtcaccgactcgtgtgaatctctacacagcgcaaccgatgtctcagtcgtttcgttactctctcgatagcagatctatatctccgacta  3525100                                                                                        --------->GLK1(2)                                                                                        --------->ARR11(3)                                                                                        <---------ARR14(2)                                                                                        <---------ARR11(3)                                                 ------>ZmHOX2a(2)                      --------->ARR14(3)                                               <---------ARR14(3)                       <---------ARR14(3)                                      <---------ICU4                                 --------->LBD16                                     --------->ICU4                              ------->TEIL                             <------NtERF2     <---------AGP1                 --------->ANAC58     <-                            ------>NtERF2      <---------ARR14(2)             --------->ANAC58  -----                           --------->DEAR3(1)  --------->ARR14(3)           ------>NtERF2  <---------                          <---------MYB55(2)   --------->ARR14(2)          ----------->HVH21<--------                          --------->MYB46(3)   <---------ARR11(3)          --------->DEAR3(1)   <----                          xxxxxxxxxxxxxxxxx>smallRNA(fl3)                  <---------O2 --------->ARR14(2)       ------>ZmHOX2a(2) --------->At4g35610   --------->ARR11(3)        ------>NtERF2 <---------GLK1(2)      <---------GLK1(1) --------->ANAC46 --------->YAB1                 --------->DEAR3(1)------>ZmHOX2a(2) ---MYB52(2)<---------MYB52(1)--------->DEAR3(1)<------ZmHOX2a(2)       ----------->HVH21<------ZmHOX2a(2) ---->MYB52(1)       --------->GLK1(2)--------->YAB1          ------->TEIL --------->O2<------ZmHOX2a(1)   acaaatcgatctccgtttcgaagaatcagccaccgagccataatcacaagatctcaaggagatgtatgtgttctccgacgacgcatccaggatctttcag  3525200  Previous    Next  AGI:  At5g11090.1    Description:  serine-rich protein-related. similar to serine-rich protein-related [Arabidopsis thaliana] (TAIR:AT5G25280.1); similar to serine-rich protein-related [Arabidopsis thaliana] (TAIR:AT5G25280.2); similar to serine-rich protein [Brassica rapa] (GB:ABL97972.1) Range:  from: 3524681    to: 3525847    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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