Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               ------>ZmHOX2a(2)                                                                             ========================                                                                            <------ZmHOX2a(2)                                                                <---------CCA1(2)                                                              --------->ANAC46                                  --------->At4g35610         --------->ANAC58                      --------->MYB46(3)                      --------->ANAC58  --------->MYB52(1)                      <---------HSFC1(2)         --------->HSFB2a(2)        =========================                ---------->DOF2   --------->ZAT2 <---------HSFB2a(2)       <---------ARR14(2)              <------ZmHOX2a(1)   <---------At4g35610         <---------ANAC55(2)     --------->GLK1(1)            --------->MYB59    <---------At4g35610--------->ANAC46         --------->ARR14(2)--------    --------->At5g28300    <-----------TGA1      ------>ZmHOX2a(1)    --------->MYB52(1)    <--------    --------->LBD16   <---------HSFB2a(1)        ==================================HOX2a_HOX2a   <---------ANAC46   --------->HSFC1(2)         ===================================HOX2a_HOX2a<----- --->P    --------->ICU4  --------->YAB1      <---------YAB1  --------->ANAC55(2)     <---------GLK1(1)   cctcgccgtgaaattaggaaaagaaccatcgtcatcagctctcacattatcctcgaaattgagcgcgtaactcaacggatcgtaactgaaatctccagga  3516600                                                                                          <---------ALFIN1                                                                                          --------->DEAR3(1)                                                                                         <------NtERF2                                                                                         --------->ATERF1(1)                                                                                         <---------ABI4(2)                                                                                        --------->LBD16                                                                                        <---------ATERF1(1)                                                                                        ------>NtERF2                                                                                       --------->RAP2.3(3)                                                                        --------->TGA1a--------->ATERF1(2)                                                                        <---------O2   <---------ATERF1(2)                                                                        <---------ANAC58<-----------HVH21                                                                        --------->O2   --------->DEAR3(1)                                                                        <---------ANAC55(1)                                                                 --------->TOE2(3)     <---------DEAR3(1)                                                                 --------->TOE1(3)    <---------LBD16                                                           --------->TGA1a            --------->RAP2.6(3)                                                           <---------O2 <---------TGA1a--------->RAP2.6(2)                                                           --------->O2 --------->ANAC55(2)  --------                                                           <---------ANAC55(2)      --------->ANAC58                                                           --------->ANAC58         --------->ANAC58                                                           --------->ANAC55(2)      --------->TGA1a                                                           =======================bZIP_bZIP <------NtERF2                  <---------YAB1        --------->YAB1     <---------TGA1a          --------->ANAC46                  --------->ICU4  --------->YAB1           --------->bZIP60(2)      --------->O2 ====                --------->YAB1   <---------YAB1            --------->ANAC46       <---------ALFIN1               <---------YAB1  <---------ICU4              --------->ANAC55(1) <---------ZAT14   ----            --------->ICU4     --------->YAB1              --------->ANAC58    --------->ZAT14  -----          --------->YAB1       --------->ATHB51       --------->ANAC58  ======================bZIP_bZIP =HOX2a_HOX2a  --------->ICU4  -------->ATHB1         --------->bZIP60(1)    --------->bZIP60(1)<---- =HOX2a_HOX2a--------->YAB1    <--------HAHB4         <---------bZIP60(1)    <---------bZIP60(1)===== ->LBD16 --------->ICU4       <---------ATHB51        --------->ANAC46  <---------ANAC58<---------DEAR3(2) -LBD16  <---------YAB1       <---------YAB1          --------->ANAC58  <---------ANAC55(2)------>NtERF2 -ZmHOX2a(1)<---------YAB1    --------->ICU4        <-----------GT1    <-------TEIL <---------TGA1a   taactctggctatgatgatgatgatgaacacaattattataagcacaattgttgttacgacacgtaaccttgatacgtgacttcacacgccggcaccgat  3516700                                               ===========================HOX2a_HOX2a                                               ------>ZmHOX2a(2)                                              <------ZmHOX2a(2)                                              ============================HOX2a_HOX2a                         --------->CCA1(2)   <---------ARR14(2)                        <---------ARR14(2)   --------->ARR14(2)                    <---------At4g35610                      ----------->ARR10      <---------ARR14(3)                    --------->At4g35610                    --------->LBD16          --------->ARR11(3)                  <---------ANAC58                   --------->DEAR3(1)        <---------ARR11(3)                  <---------ANAC58                   <---------ANAC46          --------->ARR14(3)             <---------ICU4    --------->ZAT6<------NtERF2              --------->AGP1                <---------YAB1 ->DEAR3(1) ----------->RAV1(2)             --------->GLK1(1)              --------->ICU4        ---- ====================HOX2a_HOX2a            <---------GLK1(1)            --------->YAB1       ------- -->ZmHOX2a(2)   ------>NtERF2             ----------->ARR10            <---------ATHB12      ------- ---->GLK1(1) ------>ZmHOX2a(1)           =====================================HOX2a_HOX2a    <------ --ZmHOX2a(2) <---------ATERF1(1)         <------ZmHOX2a(1)        ------>ZmHOX2a(1)         <------- ====================HOX2a_HOX2a    --------->YAB1       <----------DOF2<------ZmHOX2a(2)    --------   ctcttaactctagctcctgcgccgtagatttgagccattcgtaaggagatcttggtgttctttgttctcctccgatcatcatggcttctggctcaaccac  3516800                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                          <---------ARR14(2)                          <---------ARR14(3)                          --------->ARR14(2)         =========================HOX2a_HOX2a         ------>ZmHOX2a(1)--------->ARR14(3)         ===================HOX2a_HOX2a         ==========================HOX2a_HOX2a                         <---------ANAC46   <---------DEAR3(2)     --------->ARR11(3)                         <---------MYB46(3)   <---------MYB46(3)     <---------ARR11(3)                        <---------AtMYB61   <---------ATERF1(1)   --------->GLK1(1)                          --------->ALFIN1  <---------DEAR3(1)     <---------GLK1(1)                        <---------ANAC46 ----->DEAR3(1)      ------>ZmHOX2a(2)                           <---------ANAC46          <--------- -->AtMYB61         <------ZmHOX2a(2)                           <---------LBD16  <-------TEIL >GAMYB  ==================HOX2a_HOX2a                       ------>ZmHOX2a(2)<---------At4g35610 ---ALFIN1         --------->ARR14(2)                      --------->ARR11(3) --------->ZAT2 --MYB55(2)        <---------ARR14(2)                      <---------ARR11(3) --------->At4g35610 ->MYB46(3)   ----------->RAV1(1)                     <---------MYB46(3)      <---------ZAT2   cgcgttggctcctatacaacagatcggagatctcattctgtgatttgtgactctcgttgttgatcttgcggtggagggagagctgcattcgttatacatt  3516900                                                                                ---------->DOF2                                                                                ====================bZIP_DOF                                                                            <------ZmHOX2a(1)     ---                                                                           <----------ID1       *TSS                                                                           ----------->GT1  ---------                                                                   <---------------AGL15  --------->O2                                                    --------->ICU4 --------------->AGL15  --------->TGA1a     ----------->GT1                              ---------->DOF2 <---------ANAC58        <---------TGA1a   ------>ZmHOX2a(2)                              ==================================================bZIP_DOF --------->ARR11(3)                  --------->AHL20(2)           <---------ANAC58        <---------O2 <---------ARR11(3) <----------DOF2  <---------AHL20(2) --------->AHL20(2)--------->MYB59 =========== --GT1          ---------->ID1 ----------->GT1  <------ZmHOX2a(1) <---------ANAC46   <----------ID1   cttgatcttgtaaattttgtttctttgagggatttgtaaaaaaatacagaggaaaagattatatggtttcttgaattaggaaaaaagaagacaagtgagg  3517000             <---------At4g35610                                                 <---------ANAC58  --     --------->GLK1(2)                                                           <---------ANAC58  <- ------->DOF2--------->At4g35610     ---------->DOF2                             <---------ANAC46---- >ALFIN1   <---------ANAC46 <------ZmHOX2a(1)           ----------->GT1--------->LBD16           ---- ========bZIP_DOF    --------->AHL20(2)         --------->CCA1(2)     <---------ANAC46  <----------DOF2   gaaagagaatgtgtctggtgagaataaataggaaaacaaaaaagaagaagataagagagagtaaacaaaactccgtggataatgcgtgggcttttgggcc  3517100          <---------ANAC58          <---------ANAC58                  <---------ICU4     <----------DOF2                     <---------AHL20(2)   --------->LBD16                       <---------ICU4                       --------->YAB1 ------>ZmHOX2a(2)                      --------->AHL20(2)                   <---------YAB1 <---------LBD16                      --------->YAB1          --------->ARR11(3) ------->ARR14(2)                    --------->ICU4           --------->AHL20(1) --------ARR14(2)      <---------YAB1<---------YAB1           <---------AHL20(2) ------->HVH21   <---------TOE2(3) --------->YAB1             <---------AHL20(1)    <---------At4g35610 ------->ARR10  ---------->DOF2 ----------->GT1     <---------ANAC46    <-----------GT1   tgatccgcgttttcttgctaaagttatttttgttttgtaataataaatattgctacttgtataatatatagttttcaccatgatagtgctgctagagaaa  3517200                                    --------->ATHB12                           --------->GLK1(2)                      ---------->DOF2                           <---------REM1(1)                  <-                  <----------DOF2  <---------AHL20(2)           --------->ALFIN1             -------- ---------->ID1   --------->TOE2(3)<---------YAB1          ---------->DOF2      <---------YAB1     <-   tttgttgtttttgacttgaactttaaaagaatcaatttttattggaaataagtgtatataacaaaggtgttgctactatgttatgaacaaaaaaaaaaag  3517300                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                    <---------ANAC58   <-----------GT1                                                       ------->TEIL          ------ ---------DOF2                                                    <---------DAG2    <---------ANAC58 -->DOF2      --------->YAB1                                      <----------DOF2<---------WOX13(1) --------DAG2 ----------->GT1       <---------GLK1(1)  ---------->DOF2  <---------AtLEC2       <-----   actttttgctgttctattgtaatttgaaaaacaaatagagttccgaatgaaaaatataaaagtgtctcctttttgcatctctaattgcttccattctcca  3517400                                                                            <---------ANAC58                                                                   --------->AtMYB61                                                                   ------->GAMYB                                                                  --------->MYB46(3)        <-----------GT1                                           <---------ATHB12<----------DOF2 -------ALFIN1            <---------ALFIN1                       ------>MYB83    <---------ANAC58 ------>AtMYB61        <---------SPL7                            ------>MYB46(1) <---------ANAC58 ----->MYB46(3)       --------->DEAR3(1)         <---------At4g35610     <----------DOF2 --->ANAC46         <-----------HVH21            --------->At4g35610 <---------CCA1(2) ----ALFIN1     ---------->CDC5    --------->AHL20(2)            -------->P <---------ANAC58   ccaccaagtttcactcgctctgcgtcgtccacatccaaaaaatagtgtctcagaggccaaaacttccaaccatctctttcttggctttgctatagtatag  3517500  Previous    Next  AGI:  At5g11070.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35090.1) Range:  from: 3516218    to: 3516996    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g11080.1    Description:  ubiquitin family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67739.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 3517450    to: 3519450    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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