Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                   --                                                                                                   <-                                 <---------GLK1(2)                                                 --                                 --------->ARR14(2)                                                --                                 <---------ARR14(2)                                                --                     <---------------AtSPL3                                                      <---                --------->AHL20(2)                             <---------ARR11(3)       --------->GLK1(1)                <---------AHL20(2)                      --------->ANAC58<---------TCP16(1)       ----       ----------->GT1    <---------RAP2.6(2)           --------->ANAC58--------->PCF2  <---------GLK1(1) -GT1 <---------TOE2(3)  --------->SPL7        <------ZmHOX2a(2)        <---------PCF5<------ZmHOX2a(1)   tacaaaataatgtaaaatttaaatttgtacggctggattctcttatccgatctatcgcatgccaatttcttcagggaccacaattagaggaaatcgttat  3509700                                            --------->ATHB51                                      --------->TGA1a                                      >>>>>>>>>>HY5                                      <---------O2                                      --------->ANAC55(2)                                      <---------ANAC55(2)                                      --------->ANAC58                                      <---------ANAC46                                      --------->O2                                      --------->ANAC58     <-------MYC4                     --------->TGA2(1)     -------->ABF1                    <---------TGA1a     ------->MYC2                     <---------TGA2(1)     <-------MYC3                     --------->bZIP60(1)     ------->MYC4                     <---------bZIP60(1)     <-------MYC2                     ==========================================bZIP_DOF     ------->MYC3                     <---------bZIP60(2)    --------->TGA1a                   --------->bZIP60(2)    <---------ANAC55(2)              <-----------STF1    <--------ABF1                    ----------->STF1    --------->ANAC55(2)             <---------TGA2(2)    <---------O2             ------>NtERF2  <---------ICU4                ---------->ID1    <---------TGA1a         <---------ANAC46<--------HAHB4           <---------DAG2    --------->O2           <------NtERF2--------->TGA2(2)       --------------------->WRI1 -----------------PIF3(1)  --------->ATERF1(1)                  <---------ANAC58 ------->ANAC58           <---------RAP2.3(1)  <---------AHL20(2)   <---------ANAC58 --------bZIP60(1)        ------>NtERF2<-----------TGA1<---------ATERF1(1)<-----------GT1 ------->ANAC58          <---------DEAR3(1)<---------YAB1       <---------ANAC58 ------->bZIP60(1)    <-----------RAV1(1)  --------->ICU4<---------ALFIN1<-----------GT1 ------->ANAC46 <---------RVE1(1)  ----------->TGA1   <---------ZAT18<----------DOF2               <- --------GT1   <---------MYB52(1)  ----------->HVH21 --------->PCF5 <---------ANAC58         <------- ----->YAB1------>ZmHOX2a(1)--------->DEAR3(1)<---------YAB1 ------>ZmHOX2a(1)               <-------   cacgacacgtgtcctccgatatttttggcgccgagtagtgacgtcattattaatggtcccctccttccttgcttttttcccattcgtctactctcctttt  3509800                                                                                         <------MYB46(1)                                                                                         <------MYB83                                                                                        -------------                                                                                      <---------AtLEC2                                                                                      <---------ANAC46                                                                                      <---------ANAC58                                                                              <-----------GT1                                                                              <---------AHL20(2)                                                                          <---------AHL20(2)                                                                          --------->AHL20(2)                           --------->ARR14(2)                            --------->AHL20(2)                       ------>ZmHOX2a(1)                                 --------->AHL20(1)             <----------DOF2                                  <---------GLK1(2)       <---------ANAC58          <---------ARR11(3)                                  --------->ARR14(2) <----------DOF2 ---------DOF2     <-----------GT1                            <---------ARR14(2) <---------DAG2 --DAG2   --------->ARR11(3)                           <----------DOF2   <---------AHL20(2) ---DOF2  <-----------GT1  <---------MYB52(1)          ------>ZmHOX2a(1) <---------AHL20(1)   tctttaacaaattatcttttttttcctccgatattcttcaaaatttgttttaaaatcctttgcagatttgtgtaatttatttacttttgcttggtaccaa  3509900                                     ----------->GT1                         <---------At4g35610                                   --------->At4g35610                      ------->TEIL                              --------->YAB1        <------ZmHOX2a(1)    <---------REM1(1)   <-------       ----------->GT1   <----------DOF2  --------->AHL20(2)       --------->DAG2         <---------At5g28300 -->AtSPL8  --------->ICU4   <---------YAB1       --------->MYB59 ---------->DOF2     <----------DOF2   aaacaaatagagcaaaaatgagcaattctttttgataagcagaaaaaaatgttaggaacgaatgaagaaaaagtgatgcagctatttccttttactgtca  3510000                         <---------MYB52(1)                         --------->DOF5.7(2)                        <-----------HVH21                        ------>NtERF2                        <---------RAP2.6(3)                       <---------ATERF1(2)                           <-----------RAV1(1)                       --------->ATERF1(2)                       <---------DAG2                 <----------DOF2                        ----------->GT1                        ------           <---------YAB1<------NtERF2    <----------DOF2----------->GT1       --------->At5g28300 <-         <---------CCA1(2)<---------WRKY12--------------->AGL15  <----------DOF2             <------- ----HVH21<---------ARR11(1)          <---------CCA1(2) <----------ID1  <-----------RAV1(1)  --------   cttcgtaattcgtatcattcttttgccgtcaacttctaccatctcttttttttgtaaaacgataaaactttttgttgtcgctgtaaatgttagtaatctg  3510100                                                       ---------->DOF2          <---------AHL20(2)                          <---------AHL20(2)          --------->AHL20(2)                       --------->YAB1          --------->AHL20(1)                      <---------------AGL15          <---------AHL20(1)                    --------->YAB1>>>>>>>>>TBF1     ------------>CBF                          <---------AHL20(2) ------>MYB46(1)                               --------->AHL20(2) ------>MYB83                   <---------------AtSPL8--------->AHL20(2)                            - ----->HVH21        <------ZmHOX2a(2)         <---------AHL20(2)                                <---- --------MYB59     *TSS     --------->DAG2    --------->AHL20(2)                <---------AHL20(2)  - --At4g35610    <---------TOE2(3)             <---------AHL20(1)            <------ZmHOX2a(1) <------ ->At4g35610 <---------YAB1---------->DOF2    --------->AHL20(1)   --------->AHL20(2)   <----------DOF2   acctaatcccaatttattatggatcaccaaaaagctggtactctacaatttaataataaaagaagaagaataaatataggaataaatcgtcttttttggt  3510200           <---------AHL20(2)                                                                       -    <-------TEIL                                                                                  <-- <---------At4g35610                                                                            ----- --------->At4g35610                                                                           <----- -------->ANAC58                                                                              <------ -----REM1(1)                                                                               --------- -------->ANAC58      <-----------HVH21                         <----------DOF2            <---------AHL20(2) ---ANAC46--------->AHL20(2)       <-------TEIL         <---------AHL20(2)                 <---------YAB1   gtaagctacatataaaattcaaaccgtcaaacacacatacacatcgaaacccttatatttcattttctttctgttttagagaagaaagtttctataattg  3510300 -------->YAB1 -------WOX13(1) ---->ATHB12                                                        --------->LBD16 ----AHL20(2)            <---------GLK1(2)                         --------->ANAC46              ---- ---WOX13(1)             <---------ICU4  <-----------GT1 <----------DOF2                         ---- >ATHB51        ---------->DOF2     <----------DOF2     <---------ICU4                           ----   attgataaatctgaacatcaaagctaagaatttctcttctttttttcttcttaattcatctttccctctccgaaacagaaattcaaaaacaaattcaaca  3510400                                                                                  --------->At4g35610                                                                               <---------At4g35610                                                                              ------->GAMYB                                                                           ----------->RAV1(1)                                                                         ------>NtERF2                                                                         --------->LBD16                                                                         <------NtERF2                                                                        --------->ANAC58                                                                        --------->RAP2.3(3)                                                                        --------->ANAC46                                                                        --------->DEAR3(1)                                                                        --------->RAP2.6(2)                                             ----------->RAV1(1)        --------->RAP2.3(2)                                            --------->AtMYB61           --------->RRTF1(2)                                          ------>MYB46(1)               --------->ANAC58                                          ------>MYB83                  --------->RRTF1(3)                                        --------->DEAR4(1)             --------->RAP2.3(1)                                        <---------MYB55(2)             --------->RRTF1(1)                                        --------->DREB2C(2)           --------->LBD16                                        --------->MYB46(3)            ------>NtERF2                                        <---------MYB46(2)            --------->At4g35610                                     <-----------GT1                 --------->DEAR3(1)                                <--------HAHB4                       <---------ALFIN1                                <---------ICU4------>MYB46(1)        --------->ANAC46--------->At4g35610                                --------->ATHB12   ----------->RAV1(1)<---------ATERF1(1) -----------                                --------->YAB1------>MYB83         <---------ATERF1(1) ----------->RAV1(1)         <---------ANAC46      <---------ATHB12--------->MYB46(3)  ------>ZmHOX2a(1)--------->RAP2.6(2)         <---------ANAC58 --------------------->WRI1              <---------ALFIN1--------->ZAT2         <---------ANAC58 <----------DOF2--------->ORA47(1)     ------>ZmHOX2a(1) <---------At4g35610 ----->ANAC46         <---------ATHB12  --------->DEAR3(1)     <---------ALFIN1--------->At4g35610 ----->ANAC58       --------->WOX13(1) --------->DEAR3(2) --------->At4g35610--------->MYB46(3) ----->ANAC58 --------->YAB1 --------->YAB1--------->MYB46(3)<---------ATERF1(1) ----------->RAV1(1)   cgaaaacgatggcgtttcataacaatcactttaatcatttcaccgaccaacaacaacatcagcctcctcctccgccgcaacagcagcagcaacaacattt  3510500                                                                            --------->At4g35610                                                                            ------>NtERF2                                                                           --------->RAP2.3(2)                                                                           --------->DEAR3(1)                                                                          --------->ATERF1(1)                                                                          --------->RRTF1(1)                                                                          --------->RAP2.3(1)                                                                          <------NtERF2                                                                         <---------At4g35610                                                                        --------->RAP2.3(2)                                                                        --------->RAP2.6(2)                                                                        --------->ATERF1(2)                                                                        --------->DEAR3(1)                                                                        <---------ATERF1(2)                                                                       --------->RAP2.3(1)                                                                      ------>NtERF2                                                                      <---------ATERF1(1)                                                                      --------->At4g35610                                                                      <---------At4g35610                                                                     <-----------RAV1(1)                                                                   --------->At4g35610                                                             ----------->RAV1(2)   --------->ZAT2                                 <---------ETT(1)            --------->ZAT2--------->RAP2.6(2)            <-----------------AGL3------>NtERF2              <---------ZAT2--------->RRTF1(3)           --------->DEAR3(1)    ----------->HVH21           ====================RAV     <---------GLK1(2)          --------->ANAC58   --------->At4g35610             <---------At4g35610  --------->ANAC58        <---------ALFIN1 <---------ALFIN1                    --------->At4g35610  --------->ANAC46       <---------At4g35610   <---------At4g35610         <---------ALFIN1<---------ATERF1(1)       --------->At4g35610  <---------ALFIN1            <---------REM1(2)<---------RAP2.3(1)    -----     --------->YAB1     --------->ATERF1(1)            <---------ALFIN1--------->ATERF1(1)  <--------   --------->GLK1(2)   <---------ATERF1(1)     ------>ZmHOX2a(1)   <---------At4g35610   --------->ARR14(2)  --------->YAB1  <---------WOX13(1)   --------->MYB46(3)--------->ANAC46------>NtERF2   <---------ARR14(2) >RAV1(1) --------->ANAC58------>ZmHOX2a(1)   --------->TOE2(3) ------>NtERF2     --------->ANAC58   tcaagaatcagcaccccctaattggctcctccgctccgacaacaacttcctcaatctccacacagctgcctctgccgccgctacaagctccgattctcct  3510600  Previous    Next  AGI:  At5g11060.1    Description:  KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4); transcription factor. Identical to Homeobox protein knotted-1-like 4 (KNAT4) [Arabidopsis Thaliana] (GB:P48001;GB:Q8GXD4;GB:Q9FY59); similar to KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3), transcription factor [Arabidopsis thaliana] (TAIR:AT5G25220.1); similar to class II knotted-like homeobox protein [Prunus persica] (GB:ABH03531.1); contains InterPro domain KNOX1; (InterPro:IPR005540); contains InterPro domain ELK; (InterPro:IPR005539); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain KNOX2; (InterPro Range:  from: 3510119    to: 3513306    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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