Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           ------>ZmHOX2a(2)                                        <------ZmHOX2a(2)                                       <---------ARR11(3)                                       --------->ARR11(3)                                       <---------ARR11(1)                                       <-----------ARR10                                       --------->ARR14(2)                                       <---------AGP1                                       <---------ARR14(2)                                       --------->AGP1                               --------->LBD16                                      <---------CCA1(2)                            <---------HSFB2a(2)                                      <---------ARR14(1)       <---------ARR14(2)  <-----------RAV1(2)                                     --------->LBD16   --------->LBD16    <---------ANAC58               --------->MYB46(3)--------->ARR14(2)  ------>ZmHOX2a(2)    <---------ANAC58          --------->LBD16        <---------ARR14(2) <------ZmHOX2a(2) <----------DOF2          <-----------HVH21      --------->GLK1(2) --------->ARR14(2)<---------ANAC58         --------->ANAC46  <---------REM1(1)   <-------TEIL    --------->ARR14(2)  --------->HSFB2a(2)   <---------CCA1(2)<---------ZAT14<---------LBD16 <---------ARR14(2)<---------ANAC58   gtcccatctctccgtcaacaactacagcgatgtagaatccggatctaggttcggatccagagtcgaatttggctttgcttaagtcccagaagacttggat  3480000                                  ---------->DOF2                            ---------->DOF2                                --------->LBD16                             ===================HOX2a_HOX2a                               --------->HSFC1(1)                        <------NtERF2                               <---------HSFC1(1)                      <---------DEAR3(1)                               --------->HSFB2a(2)                     <---------ANAC46                       ------->MYC3                                   <---------LBD16               -                    <---------ALFIN1                                  --------->ATERF1(1)  <---------At4g35610                   ------>ZmHOX2a(2)                                  <------NtERF2        --------->At4g35610                  <------ZmHOX2a(2)                                  <---------ORA47(2)    <---------LBD16                 --------->ARR14(2)                                  <---------RAP2.3(1)=============                 <---------ARR14(2)                                 <---------RAP2.3(3) <------ZmHOX2a(2)           --------->ARR14(2)  <---------HSFB2a(2)                  <---------RAP2.3(2)--------->ARR11(3)           <---------ARR14(2) <---------LBD16                       <---------DEAR3(1) <---------ARR11(3)           ------->TEIL<-------MYC3                               --------->CCA1(2)   <---------GLK1(1)           --------->GLK1(2)<-----------GT1                  ---------->DOF2<------ZmHOX2a(1)    <---   tttgggagaaacgaatctggatccacgttttttccagaaagctaatgtgtttaagttgagatggaaagagacggcggaggaaagagagagatcagcggag  3480100                                                                          <---------HSFB2a(1)                                                                          --------->HSFC1(2)                                                                          <---------HSFC1(2)                                                                          --------->HSFB2a(1)                                                                        ---------->DOF2                                                               --------->ATERF1(1)           <---------ANAC46                                    <---------ANAC58        --------->ALFIN1                                       <---------ANAC58--------->HSFB2a(2)      --------->ALFIN1                                        <---------ATERF1(1)<---------PCF5 --------->DOF2    <---------MYB46(3)       <------ZmHOX2a(1)--------->ZAT18   <---------HSFB2a(2) ===HOX2a_HOX2a   --------->ALFIN1   <---------AtLEC2        <---------ZAT18  <---------LBD16       - ---ZmHOX2a(1)    <---------AtMYB61<---------YAB1   <-------TEIL    ------>ZmHOX2a(1)        --------   gagaaagagagtggcgaagagtggttgtagtaatcttgtgaatggaggaagagattcacagagtggcctcctaagaaagttcgggaccatgttagataga  3480200                                                                                  <---------DEAR3(1)                                                                              --------->ATERF1(1)                                                                             <---------MYB46(3)                                                                             --------->MYB55(2)                                                                             <---------ATERF1(1)                                                                             <---------DEAR3(2)                                                                            <---------DEAR3(1)                                                                          ------------>AtMYB77               <------MYB83                                               ------>NtERF2               <------MYB46(1)                                            <---------RRTF1(1)              <---------MYB46(3)                                          <---------ERF1  ===========              --------->MYB111(1)                                        <---------DEAR3(1)              --------->MYB111(2)             --------->LBD16            <---------RAP2.3(2)              --------->MYB46(2)            <---------LBD16              --------->O2 <---------MYB46(3)         ------>ZmHOX2a(2)                 --------->MYB52(1)            <---------O2<---------AtMYB61        <---------At4g35610              <------ZmHOX2a(2)         <---------WOX13(1)--------->ALFIN1       <---------ARR11(3)               <-----------HVH21        <---------MYB46(3)<---------ANAC46     <---------MYB52(1)             <-------TEIL                 --------->ATHB12 <---------ANAC58     ----------->HVH21             --------->CCA1(2)            <---------YAB1<-------GAMYB    --------->LBD16                --------->ARR14(1)          --------->At5g28300<---------ANAC58   <---------ANAC46                --------->GLK1(2)         <---------DEAR3(1)   <---------ANAC46<--  <------NtERF2<---------ANAC46   --------->ARR14(2)        --------->SPL7<---------RAP2.3(1)-------- ------>NtERF2--------->MYB59     --------->ARR11(1)      <---------SPL7--------->ATERF1(1) <-------- -------->ANAC46                  <---------ARR14(2)      ----------->HVH21<------NtERF2  <------ZmHOX2a(1) ->CCA1(2)  <---------MYB52(1)    <---------GLK1(2) --------->CCA1(2) ----------->HVH21 <---------ANAC46   agacgccgtgatctgtttggtagagacatgttgtgagattcggatcaccggaagatagaggggacggtgattgcgacggcggttgcggtggaggatgatt  3480300                 ------>NtERF2               --------->ATERF1(1)               --------->RAP2.3(1)               <------NtERF2              <---------ATERF1(1)             <---------DEAR3(1)           <---------ANAC46          <------MYB46(1)          <---------MYB46(3)        <--------P        --------->ALFIN1        <---------MYB52(1)       <-------GAMYB      --------->MYB55(2)      <---------DEAR3(2)     <---------DEAR3(1)                                                   >>>>>>>>>TBF1   ------------>AtMYB77                                                   ------------------------>ANAC81  <---------DEAR3(1)                         <----------DOF2           >>>>>>>>>TBF1  ------>ZmHOX2a(2)                          <---------DAG2   <---------HSFB2a(2)                  <- ========HOX2a_HOX2a                      <-----------GT1    <---------LBD16                       <- -------YAB1<---------LBD16         <---------ANAC58        --------->ALFIN1             ---------->DOF2 ->ATHB12 <------MYB83              <---------ANAC46       --------->ALFIN1  ---------->DOF2       -- -YAB1<---------MYB46(3)            <---------ANAC58 <-----------GT1>>>>>>>>>TBF1---------->DOF2  <--   gtgatcggcggttgggcggagccaagacggagacattttcgtgtttacttttttttttcaagttggggaagaagaagaagaaagaaagaataaaagagag  3480400      --------->LBD16                 <------MYB83                      <------------CBF     --------->HSFB2a(2)              <------MYB46(1)                   <---------GLK1(2)    <---------LBD16              <---------AHL20(2)              <---------AHL20(2)   <---------LBD16           <---------YAB1                      ----------->TBP      <-------------- --------GLK1(2)          *TSS  <---------YAB1               <---------AHL20(2)       --------------- --------ARR11(3)       <------MYB83  ----------->GT1        --------->AHL20(2)      <--------------- ------->ARR11(3)       <------MYB46(1)                      <-----------TBP  <---------AHL20(2)  --- -------RVE1(1)         ----------->GT1   ---------->DOF2  <-----------TBP----------->GT1        ----   agattttcgggagttttgtatttgggaggtttttattatttggttaaagagggatttgtatatttatataaaaagattgttaaattttcagaaaatggaa  3480500            <---------WOX13(1)          <--------ATHB1          -------->HAHB4          <---------ICU4          --------->ATHB12         --------->ICU4     --------->TOE2(3)         <---------YAB1    --------->ANAC55(1)                              -------->HAHB4      --------->ICU4       --------->ANAC55(2)                              <---------ICU4     <---------AHL20(2)    --------->ANAC46                                --------->ICU4    --------->YAB1         <---------ANAC55(2)                           <---------ICU4   <---------YAB1          --------->ANAC58                              --------->YAB1 -AGL15<---------ICU4      ----------->GT1            --------->ATHB12  <---------YAB1 >AGL15--------->YAB1   --------->TOE2(2)           <---------WOX13(1)  --------->ICU4            <-- --AGL1-------->HAHB4  --------->YAB1             <------ZmHOX2a(1)    <---------AHL20(2)    ------>ZmHOX2a(2) -------->GT1         <---------ATHB12 --------->GLK1(2)      --------->CCA1(2)            <---------ARR11(3) ----->DAG2<------------CBF--------->ANAC58      <---------YAB1       --------->YAB1       --------->ARR11(3)   aggttataataatgattggctcgaatcatacgtaaaacaagaatgtggatgaggattgatagcgatatgagattataattatgcgaaaattttgatcttg  3480600                                                                                                  <--                                   <----------DOF2                                  <---------ARR11(3) <---------ANAC58                  <---------DAG2                           --------->AHL20(2)    <-- <---------ANAC58           --------->GLK1(2)                               <---------AHL20(2)   ---- -------ZAT18            --------->AHL20(2)      <----------DOF2    <------ZmHOX2a(1)      <---------   tgggcttgcaacttgtaaacttgggcataaaatctgactttttcaacttgactttcttcttatatatggaggatggatttaaacaagaactattcacatt  3480700                                                                              <-----------GT1                                                                            <---------WOX13(1)                                                                          --------->ATHB12                                                                         <---------YAB1                                                                         --------->ICU4                                                                    --------->ANAC58             <---              --------->ARR11(3)                                    --------->ANAC55(2)          <---          --------->ANAC55(2) --------->At5g28300                   --------->ANAC55(1)  <---------ZAT18     <---------ICU4<---------LBD16     ----------->GT1              --------->ANAC46    <---------ALFIN1 ----MYB83<---------ANAC55(2)----------->GT1                        <---------ANAC55(2)--------->ZAT14 ----MYB46(1) <---------ARR11(3)    --------->DAG2                  --------->ANAC58   <---------ZAT14 ----->MYB59  --------->ARR14(2)  ---------->DOF2                 <---------ALFIN1--------->ANAC58 --GT1  <-----------GT1     --------->ZAT6    <-----------GT1  <------ZmHOX2a(1)  --------->ANAC58   aggttgaatattacgagatattcagggttaacagtaaaaaggcgttattaactgttcgagtatgaggaacacgttatgattaacaagcctgcacacttga  3480800                                         <---------ICU4                                         --------->AHL20(2)                                         --------->ATHB51                                         <--------HAHB4                                         <---------AHL20(2)                                         -------->ATHB1                                        <---------ATHB51                                        <---------ATHB12                                        --------->ICU4                                      --------->WOX13(1)                                  <------MYB83<-----------GT1                                  <------MYB46(1)                       <-----------GT1                                  <---------ANAC46          <----------DOF2  --------->ATHB12                ----------->GT1          <---------DAG2        <---------AHL20(2) ------TOE2(3)                   <---------MYB46(3)        --------->TOE2(3) --------->AHL20(2) ------TOE1(3)                   --------->MYB59     <-----------GT1   ---------->ID1           <----   aggtttattggagaacataatcaattggtataagttgggtcaattatttcacattatacaaccttttttttttgtcacattatataatggatttagaatt  3480900  Previous    Next  AGI:  At5g11000.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25200.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69699.1); contains InterPro domain Protein of unknown function DUF868, plant (InterPro:IPR008586) Range:  from: 3479030    to: 3480426    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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