Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------WOX13(1)                                                                   --------->ATHB12                                                                  <---------YAB1                                                               --------->ICU4                                                             --------->AHL20(2)                                                            --------->AHL20(2)                                 <---------ZAT2             <---------AHL20(2)                          <---------ATHB12               --------->AHL20(2)                  <-------TEIL   --------->ZAT2         <---------AHL20(2)              <---------TOE1(3)  --------->At4g35610    --------->AHL20(2)      <XXXXXXXXXXXXXXXXXXXXMIR866-5P  ---------->DOF2--------->ARR14(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <----- ---->GT1     <---------TOE2(3)  <---------At4g35610  --------->YAB1>>>>>>>>>ARR2   --------->GLK1(2)   aagaaaaagaagttttaaggttcttcaaatcatctagctgactagctccatagcaaaaataaataattttgattgtttattagcacaatctgtttcttaa  3463800                                                                                           <---------                                                                                      ----------->GT1                                                                                     <---------TOE2(3)                                                                                     --------->MYB59                                                                                 --------->YAB1                                                                              --------->YAB1                                                        ==========================HOX2a_HOX2a    <---------AHL20(2)                            <----------DOF2          --------->YAB1  --------->YAB1  <---------AHL20(2)                              <---------DAG2  --------->DAG2--------->ICU4  --------->AHL20(2)     --------->YAB1     <-----------GT1      ---------->DOF2<---------YAB1     <- ------GT1   <---------------AtSPL8 --------->ZAT14     ------>ZmHOX2a(1)  ------>ZmHOX2a(2)     ----   ccatataaatttagacttgtacaaaaatcaaaatgcagtttagtttatacaacttttcctataactataaagttcgatcgtcataataaggtataacaat  3463900                                                             --------->ANAC58                                                    <------MYB83 ---------->DOF2                                                   --------->MYB46(2)                                                   --------->MYB59                                          --------->MYB52(1) --------->ANAC58                                         --------->ICU4    ---------->DOF2                                  --------->AHL20(2)<------MYB46(1)----------->GT1               ----            ------>MYB46(1)   <---------AHL20(2)   --------->MYB111(1)           <------ZmHOX2a(2) --------->ZAT6              --------->AHL20(2)   <--------P ------------------------>ANAC81     <--- --GT1      ------>MYB83  <---------ANAC55(2)     <---------MYB55(1)            <---------ARR11(3) ----------GT1           <-------TEIL<---------TOE2(3)   <---------REM1(2)      --------->ARR11(3) -- ----->AHL20(2)     --------->AHL20(2) --------->YAB1  <---------ETT(2)     ---------->DOF2    ------   ttaactctagtaccaaatgctataaaatacataaaatttaagaataatggaggtaggtctacaaagcaaaagaaaaaaaaaagatcatggaagttacaaa  3464000           --------->LBD16          --------->ANAC55(2)          <---------ANAC55(1)          <---------ANAC58                                                                        <--          <---------ANAC58                                            --------->YAB1            <----          <---------ANAC46                                         <---------ICU4               -----          <---------ANAC55(2)                                     --------->AHL20(2)            -----         <---------LBD16                                          <---------ATHB51              -----      <---------HSFB2a(1)                                         <---------AHL20(2)            <----      --------->GLK1(1)                                           --------->ICU4               ------      <---------GLK1(1)                                          <---------AHL20(1)            <-----     ---------->TaMYB80                                     <---------YAB1                     ------    <---------GLK1(2)                                      --------->TOE2(3)                   <----- --------->ANAC58                             --------->ANAC58  --------->YAB1                 <----- --------->ANAC58                             --------->ANAC58--------->AHL20(2)           --------->AHL20(2) ----->MYB46(3)                        --------->YAB1     <--------HAHB4               ----------->GT1 ------MYB52(2)           --------->YAB1 <---------CCA1(2)<---------ICU4              <---------ANAC55(2) ------->MYB52(1)        --------->AHL20(2)   --------->ANAC46<---------AHL20(2)   <---------ARR14(2) --->MYB52(1)      --------->ANAC46   <---------YAB1      --------->ATHB12 --------->MYB52(1) <------   cgaacggaatttccgtgatacacataaataaaaattggtcatcatatcacacaattcgcatcattaaaataattagaaaacggacaatacggataaaata  3464100                           <---------REM1(1)                          <---------TOE2(3)                       <---------WOX13(1)                      <------------CBF                     -------->HAHB4 -------WOX13(1)     --------->ATHB12 ----ATHB1           <---------ICU4 ---->ATHB12         <--------ATHB1        --------->At5g28300 ---->ATHB51        <---------ATHB12     --------->ANAC46 --->HAHB4          <---------YAB1       --------->ANAC58 -----ICU4          --------->ICU4       --------->ANAC58 --->AHL20(2)  --------->ANAC55(1)      --------->SPL7 ----ATHB51    --------->ANAC46        <---------ALFIN1 --->ICU4      --------->ANAC58       <---------SPL7<---------DEAR3(1)            --------->RAP2.6(3) ----AHL20(2)  --------->ANAC55(2)   --------->ANAC58  <---------ANAC46 <-----------HVH21 ----YAB1      --------->ANAC58      --------->ANAC58 <------NtERF2     --------->TOE2(3) ---AHL20(1)   <---------ANAC55(2)  <---------------AtSPL3      <----------DOF2  --------->MYB52(1)   attggtaactggccaaaacgtaatgattgatgtaagaagacgcacggcaaaacgtcgtcgtataagcttttcatcgtcaaacaaaacggcttcgtttcaa  3464200                    <-----------GT1                    --------->ZAT6                                   <---------WRKY18(1)                  <-----------GT1                                   ----------->HVH21                 <-----------GT1                                    --------->WRKY12                <           <----------DOF2           --------->ANAC58               --------->WRKY38(1)       -------         ---------->ID1              --------->ANAC58              <---------WOX13(1)         -------   <---------ALFIN1*TSS            ---------->DOF2  <-----------GT1<--------P<---------ICU4--------->DEAR3(1)   ggctcacacttgtctttatttatcacttcatcttctccaaagccataccacttgaaacctctctctctggttgacccgataatttctctctcgcagacgc  3464300             ------->TEIL             <---------ARR11(1)             --------->GLK1(2)   ------>ZmHOX2a(2)  <------ZmHOX2a(2)     ------>ZmHOX2a(2)  <---------GLK1(1)     --------------->AtSPL8  --------->GLK1(1)    <------ZmHOX2a(2) <---------ARR11(3)   <---------ARR11(3) <---------AGP1       <---------AGP1 --------->ARR11(3)   --------->ARR11(3) <---------ARR14(2)   --------->AGP1 --------->ARR14(2)   <---------ARR14(2)                     <---------MYB52(1) ---------CCA1(2)     --------->ARR14(2)             --------->ARR14(2) -->ANAC58   --------->ARR14(2)        --------->REM1(1)    ----------->GT1 -->ANAC58   <---------ARR14(2)<----------DOF2       <---------ARR14(2)  <----------DOF2<---------MYB52(1)   acagatctctcttcgaatctgctagatctgttccttttcttacatctgtattgcgaaacctctggtaatttcatactttcatgtctctccgtttcatttc  3464400                                                                                       <---------ANAC58                                                                                       <---------ANAC58                                                                                  <---------HSFB2a(1)                                                                                  <------MYB46(1)                                                                                  <------MYB83    ---                                                                       ==============================                                                                       ==============================                                                          <-----------RAV1(1)     --------->HSFB2a(1)                                                       <-----------RAV1(1)   ------>ZmHOX2a(2)   <---                                                    ------>ZmHOX2a(1)  ------>ZmHOX2a(1)        <----                                                    ===============================HOX2a_HOX2a  -----            <---------ZAT2                          ================================HOX2a_HOX2a -----            --------->ZAT2                        ----------->RAV1(2)  =============HOX2a_HOX2a <----      <-----------HVH21 <----------DOF2           =================RAV--------->TOE2(3)<---------ANAC46   <---------ANAC58     <---------DAG2            ====================RAV  <---------ARR14(2)   -----   <---------ANAC58    <---------ANAC58    <---------YAB1 <---------REM1(1)--------->ARR14(2)   <---- <-----------GT1       <---------ANAC58<---------GLK1(1)  <---------MYB46(3)<------ZmHOX2a(2)   <----   gattttcgtttcacagctagggtttgctttttgttacatcgatttctgattttcctggtgttgttgcctcttcctcagatcggaaggtttcgtttacaga  3464500                                                                ---------->ID1     --------->CCA1(2)                                         <-------GAMYB    --------->ARR14(2)                                 ------>ZmHOX2a(2)    <---------ARR14(2)                                <------ZmHOX2a(2) --->ZmHOX2a(2)                                       --------->CCA1(2)             --------->ATERF1(1) ===HOX2a_HOX2a                     <---------SPL7   <---------AGP1   --------->ARR11(3) ====HOX2a_HOX2a                   <---------ANAC46  --------->AGP1   <---------ARR11(3)            - ---ZmHOX2a(2)                     ==================bZIP_DOF <---------MYB46(3)    <------NtERF2   - -----AGP1                         ====================================MYC_MYB     --------->LBD16  < ---->AGP1                         <---------TGA1a   <---------ARR14(2)           <---------ANAC46 <- ---->ARR14(2)              <---------GLK1(1)        --------->ARR14(2)  <---------HSFB2a(2)       -- -----ARR14(2)              --------->GLK1(1)        <---------ARR11(3)  --------->HSFB2a(2)       -- ---->ARR11(3)            --------->LBD16            --------->ARR11(3) <-----------------AGL2     <- -------ARR10        <---------GLK1(1)    <----------DOF2     --------->MYB52(2) <---------LBD16  --- -----ARR11(3)   <---------TOE1(2) --------->TGA1a  <---------CCA1(2)<---------CCA1(2)       --------   tctaccgatacgagtttcgcagtatttccgagttccgacgtatgctttgttttcagatctgggtttgttgtatatctagaaatggcggagactttgaaag  3464600                                                             <---------MYB52(1)          --------->ATHB12                                  --------->LBD16       --------->YAB1                                      <---------ANAC55(2)  <-------TEIL --------->HSFB2a(2)                         <---------ANAC58 --------->ARR14(1)                                        <---------ANAC58 --------->CCA1(2)                                         <---------ANAC55(1) -------->ARR14(2)                                         --------->ANAC55(2) -------->ARR11(1)                                         <---------ANAC46 ---------ARR14(2)                                        ------>ZmHOX2a(2) --------HSFC1(2)                             --------->ARR14(2) ------->HSFC1(2)                     <-------GAMYB   ----------->ARR10                         ----- ------->HSFB2a(1)                   <------MYB46(1)  --------->WRKY12             <----------DOF2 --------HSFB2a(1)   --------->ALFIN1<------MYB83     --------->WRKY38(1)        <---------At4g35610 -------->ARR10<---------HSFB2a(2)  --------->MYB59<---------ANAC46              --------->At4g35610 -->DOF2 <---------YAB1        <---------YAB1 <---------ARR14(2)   <---------MYB46(3)           <----   aagattcgattatgattcgagaggtttgggattacaatttggttgaagaattcgcgttgatccgtgagattgttgacaaattcagctatatcgctatgga  3464700  Previous    Next  AGI:  At5g10960.1    Description:  CCR4-NOT transcription complex protein, putative. similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT1G80780.2); similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT1G80780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45475.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941) Range:  from: 3464219    to: 3465688    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version