Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->DAG2                                  ---------->DOF2                                 ---------->DOF2     --------->MYB52(1)          <---------ARR14(2)    <---------WRKY12             --------->ARR14(2)   <------ZmHOX2a(2)           --------->LBD16                            ---------->DOF2  --------->ARR11(3)         <---------LBD16                        ---------->DOF2--------->ALFIN1 -  <---------ARR11(3)  <---------ZAT6----------->GT1               <---------AHL20(2)              --- >DOF2  ------->GAMYB ----------->GT1           ---------->DOF2   --------->AHL20(2)   <------ZmHOX2a(2)   aagagatcaacggagagggaagtagtgtaaaaccggaaaggcaaatcgaagaaagagtagagaaggaattaaaagagaaagaagagtggatcaaacagac  3441400          ---------->DOF2     <---------ANAC58     <---------ANAC46      ---------->DOF2          <------ZmHOX2a(1)     <---------ANAC58<---------ICU4              --------->At4g35610    <-----------------------TaNAC69(2)           <---------At4g35610 -------->YAB1 ----------->GT1               <-----------HVH21     <---------GLK1(2) ------>At5g28300   --------->ICU4    <---------ATHB12    <------ZmHOX2a(1)   agtaatagcgtcgaaaggagtaatactgacaaagagaccaataacaccttcagaggaagaggaaagactgaatcgcagagcaagaagtgctaagttaaga  3441500                                                        ---------->DOF2                                               --------->YAB1                   <----------DOF2            <<<<<<<<<ARR2                   <---------DAG2             <---------ATHB12                 --------->YAB1            <---------YAB1                  --------->WOX13(1)               --------->AtLEC2    ----          ----------->GT1             <---------At4g35610               <----------DOF2          <---   gtgattcagaagttgtgattactttatgaaatgtttttttagttgacaatcaaaatttcaaagctctaactaagctttcattcaaaatagtcgaggtttt  3441600                                                                          --------->ANAC58                                                                          --------->ANAC46                                            --------->YAB1                --------->ANAC58                                            <--------ATHB1              --------->MYB52(1)                                           <---------ATHB51             ------>MYB46(1)                                           <---------ATHB12             ------>MYB83             =================================HOX2a_HOX2a              --------->MYB55(1)             <------ZmHOX2a(1)          --------------->AGL15         --------->AtMYB61           --------->MYB59             ------>ZmHOX2a(2)           <-----------GT1     ---------->DOF2                   ----------------->AGL3    --------->AHL20(2) ---------->DOF2                  <---------WOX13(1)            <---------ATHB12           <--------- ----->HSFB2a(2)                <------ZmHOX2a(1)             --------->WOX13(1)     ------------>CBF ------HSFB2a(2)                ==============HOX2a_HOX2a   ------------>CBF      <---------ZAT6   tagaaaagaaagttaggaacagggaaacagaagaggattgatccaataatagttgaaccaaaaccaattaaaccaaacggaatagtgttcaattttcgaa  3441700                                         <------NtERF2                                         ------>NtERF2                                         --------->LBD16                                        --------->RAP2.3(2)                                        --------->DEAR3(1)                                        --------->RAP2.6(2)                                        --------->ANAC46                                        --------->RRTF1(2)                                       --------->RAP2.3(1)                                       <------NtERF2                                       <---------LBD16                                      <---------ATERF1(1)                                          --                                      ------>NtERF2                                              ----                                      <---------RAP2.3(1)                                        ----                                     --------->DEAR3(1)                                          ----                                     <---------DEAR3(1)                                         -----                                    --------->ATERF1(1)                                        <-----                                    <------NtERF2                                              ------                                   <-----------HVH21                                           <-----                                   <---------ATERF1(1)                                         <-----                                  <---------DEAR3(1)         --------->ANAC58                  <-----                                 <------NtERF2               --------->ANAC58                  <-----                               <---------ANAC46           <---------At4g35610                 -------                               --------->bZIP60(1)        --------->ZAT2                    <--------                               <---------bZIP60(1)        --------->At4g35610             ------>ZmHOX2a(1)                          <---------ANAC58           *TSS <---------ZAT2                  ===========    ----------->GT1       --------->ALFIN1          <---------ZAT2                       --------->ANAC46 --GT1       <-------TEIL <---------ANAC58          --------->ZAT2                <<<<<<<<<TBF1<-----   ccagaccggttaaaatgcataagtaagtgtgtgtcgtcgtcgccgcaaaaacccagttggagctcgaaacccttcttcatcttcttcttctcctccacct  3441800                                                                                       <---------CCA1(2)                                                                                     <---------ANAC58 ------->MYB46(3)                                                                    <---------ANAC46 -->MYB83                                                                            --------->ANAC55(2) -->MYB46(1)                                                                         <---------ANAC55(1) ----->MYB52(1)                                                                      <---------ANAC58 ---->MYB55(1)                                                                    <---------MYB52(1) ----MYB111(1)                                                                   <---------SPL7 --->AtMYB61                                                                 --------->ANAC46 ----MYB111(2)                                                              --------->MYB46(3)      - ----MYB46(2)                                                              <---------ALFIN1        -- ----MYB55(2)                   <---------GLK1(2)                          --------->ANAC46        <- ----MYB59            <----------DOF2                         <---------ICU4<---------MYB55(2)     -- -->ANAC46       ------>ZmHOX2a(2)                           <---------ATHB12<---------ALFIN1     <-- -ALFIN1       --------->ARR11(3)                    <---------ANAC58    <---------ALFIN1       <---- =======================HOX2a_HOX2a                  <---------ANAC58  ------>ZmHOX2a(1)   <--------- ----MYB52(2)  <---------ARR11(3)                 ---------->ID1    ------>ZmHOX2a(1)<---------ANAC55(2)   aaccaatgggagcaattgatctctctttctcacagagtcttctcttctcttcgtcgcgttccaatctttcctcctccacacaccgttccgtctctttttt  3441900           --------->ANAC46       <---------ANAC58           --------->ANAC58    <---------MYB52(1)           --------->ANAC58  <---------MYB46(3)       --------->ANAC58      --------->DEAR3(1)    <------NtERF2           <---------------------WRI1   --------->HSFB2a(2)      <------NtERF2   ------>NtERF2           ------>NtERF2 <---------ATHB12   <---------HSFB2a(2)    --------->DEAR3(1)   --------->LBD16        --------->ATERF1(2)              --------->ANAC58  --------->LBD16         <---------ATERF1(2)              --------->ANAC46                    <-----  <---------ANAC46        --------->RAP2.6(2)              --------->ANAC58                 --------- <------NtERF2--------->MYB52(1)  <---------ANAC58       <---------ALFIN1                   <------MYB46(1) --------->ATERF1(1)      --------->RAP2.3(2)           <---------REM1(2)                   <------MYB83 <---------LBD16         --------->RAP2.3(1)           ------>NtERF2                   --------->ALFIN1 ----->NtERF2----------->HVH21<-------GAMYB           <---------bZIP60(1)            <---------ANAC46 ------->DEAR3(1)        --------->ATERF1(1)          --------->bZIP60(1)            <---------ANAC58 --------ATERF1(2)      <---------At4g35610     --------->ICU4            <---------REM1(1) <-------- ------->ATERF1(2)      <---------ATERF1(1)     ----------->TGA1          --------->ALFIN1  <-------- -------RAP2.6(2)       --------->At4g35610     ----------->HVH21 ---------->DOF2    <---------ANAC58 -------RAV1(1)<---------At5g28300<---------ANAC46    --------->ANAC46  --------->At4g35610 --------- -DOF2 --------->ANAC58<-----------RAV1(1)    --------->YAB1    <------NtERF2   --------->CCA1(2)   gccgccgggaagcaagtcacggtgtctgccgccgttgcgttcaatgagtcatgacgacgacacggcctcaaaggaggtgaagctatggggtggaaggttc  3442000                                                                --------->ANAC58                                                                --------->ANAC58      <-----------HVH21     --------->ZAT14                     --------->ANAC46 --TEIL                     <---------ZAT14                  <---------REM1(2) >HSFC1(2)                  --------->ZAT18           <---------GLK1(2)             ---------->DOF2 -HSFB2a(1)        --------->ALFIN1                 <---------TOE1(3)       <---------ANAC46 -HSFC1(2)      --------->DAG2                      --------->DAG2       --------->ICU4 >HSFB2a(1)    ---------->DOF2                      <---------TOE2(3)<------ZmHOX2a(1)   gaagagagtgtcactgagaaagtggagaagttcactgagtcaatttcatttgataaggttctctacaagcaggacattatgggtagcaaagctcatgctt  3442100                                        ------->TEIL                                 <---------DAG2                           <----------DOF2                          <---------ANAC58                          <---------ANAC58                        <---------YAB1           <-----------RAV1(2)<-----------GT1--------->TOE2(3)<---------At4g35610                  --  <---------ANAC58       <------------------------ANAC81      <-------GAMYB                  <-------  <---------ANAC58<-----------GT1<----------DOF2     --------->TOE2(3)                  --------->AtLEC2   caatgcttgctcaccaggttttacatttgcttttactttatgcattttcttaatttcttaattcagttgtgattctatgtcttctaagtaatgcaaattt  3442200                                                                                           <---------                                                                                   <---------ARR11(3)                                                                                   --------->ARR11(3)                                                                                  --------->YAB1       <------ZmHOX2a(1)                                 <---------YAB1          <---------YAB1     <XXXXXXXXXXXXXXXXXXXXMIR169H-N                    ---------->DOF2        --------->ICU4 -------->DOF2      --------->MYB52(2)    --------->MYB52(1)              --------->ARR11(3) --ARR14(2)     XXXXXXXXXXXXXXXXXXXX>MIR426        <----------ID1         <---------ARR11(3)   gtaaagtcaggacatttttggttatttgttcttacaggggctaataactgatagcgataaagatagcattttgagaggtcttgatgatattgagagacaa  3442300  Previous    Next  AGI:  At5g10910.1    Description:  mraW methylase family protein. similar to Os02g0137600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045831.1); similar to hypothetical protein OsJ_005157 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21674.1); contains InterPro domain Bacterial methyltransferase; (InterPro:IPR002903) Range:  from: 3439554    to: 3441583    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g10920.1    Description:  argininosuccinate lyase, putative / arginosuccinase, putative. similar to unknown [Picea sitchensis] (GB:ABK25117.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ83071.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61603.1); contains InterPro domain L-Aspartase-like; (InterPro:IPR008948); contains InterPro domain Fumarate lyase; (InterPro:IPR000362); contains InterPro domain Delta crystallin (InterPro:IPR003031); contains InterPro domain Argininosuccinate lyase; (InterPro:IPR009049) Range:  from: 3441753    to: 3444143    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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