Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                         <---------ANAC46                                          <-                                         <---------ANAC58                                         <--           <------ZmHOX2a(2)             <---------ANAC58                                       -----     ---------->DOF2                    --------->ZAT2                                         <----- -------->AGL15                     --------->TOE1(3)                                          ------ ---------AGL15                     --------->TOE2(3)                                          ------ --------->AGL3                   <-----------ARR10           ----------->HVH21           --------->HSFB2a(1) --MYB59 <------ZmHOX2a(1)   --------->ANAC58     <---------GLK1(1)                       <---------HSFC1(2) ----------AGL2              --------->ANAC58   --------->ATHB12                          <---------HSFB2a(1) ----------AGL3     <---------AHL20(2)  <---------ZAT2        ----------->TGA1            --------->HSFC1(2)   ttttagcaaaaggatcagtttttaaaatgggaagcaaaccttagcttggatgatttctgtctctctgacgaaaaactcagtgagagaagagaaacttcca  3432100                            =====================================HOX2a_HOX2a                            <------ZmHOX2a(1)                         <-----------RAV1(2)                     ---------->DOF2                  --------->HSFB2a(2) ------->GLK1(2)  <---------HSFB2a(2)           <---------At4g35610 ----------ARR10  --------->LBD16               --------->At4g35610 -------GLK1(2)   ------>ZmHOX2a(1)    ----------->GT1                                            --- ---->LBD16   <---------ARR14(2)    <---------ANAC46          --------->At4g35610                <--- ----HSFB2a(2)--------->GLK1(2)     <---------ANAC58          <---------At4g35610            -------- --->HSFB2a(2)--------->ARR14(2)    <---------ANAC58       ---------->DOF2                 <---------ATHB12 --->HSFC1(1)<---------GLK1(2)     --------->ATHB12       <------ZmHOX2a(2)            <---------MYB59   gaatctagacaacgagattcctcgaaagcaggagaattgagtggaaacttagctctctcgatcaagctgaagacgatggtgtcttcttgcctaatcaacg  3432200                                                                                             <-------                                                                                             <-------                                                                                    <---------ARR14(2)                                              --------->GLK1(2)                     ------->TEIL                                    --------->YAB1 --------->ARR14(2)               --------->ARR14(2)                                  -------->P  <---------ARR14(2)                   <---------CCA1(2)   <---------YAB1               --------->MYB46(3) <---------ARR14(2)        --------->REM1(1)      < ------>GLK1(2)        <---------ZAT14 <---------ARR14(2)                  <----------DOF2 <---------ZAT2 ------GLK1(2)         --------->ZAT14 --------->ARR14(2)                ------>NtERF2     --------->ZAT2 ->MYB52(1)           <<<<<<<<<<<<<<<<<LFY    --------->ARR14(2)     --------->AtLEC2   ----------->RAV1(2)   attctctgattaagtcaagactcagtacattggaacaaccagaacccgaatccgattcgaagactcttgccatgccgcttcaactgtatcccctgcttga  3432300                                                                                 <---------LBD16                                                                                ----------->RAV1(2)                                                                       <------ZmHOX2a(1)              --------->ANAC58                                     ---------->DOF2          --------->ANAC58                              ----------->TGA1   <---------ICU4 --WOX13(1)   --------->ANAC58                         <---------WOX13(1) --------->ICU4 ---DOF2  --------->ANAC58                          <---------YAB1<---------WRKY12           ------->TEIL ---------ANAC46         --------->YAB1 --------->CCA1(2)    ---------->DOF2    <---------ANAC46<----   tggtgtataagtaagcaaacaattcattcatagaaactatagagatgagcaattgtgaatgacgaaagtcaaaggacttattacctggaaatatgaagct  3432400                                                               <---------TOE2(3)                                                               --------->ANAC58                                                               *TSS                                                               --------->ANAC58                                                            <---------ATHB12                                                        <---------------AGL15                                                        ------>ZmHOX2a(1)                                                        --------------->AGL15             ------>ZmHOX2a(1)                  <---------WOX13(1)       <<<<<<<<<TBF1                      <---------AtLEC2--------->WOX13(1)            ---------->DOF2    <<<<<<<<<TBF1                   <---------DAG2     --------->TOE2(3)              --------->ANAC58 <<<<<<<<<TBF1       ---------->DOF2<----------DOF2<---------ANAC58                   --------->ANAC58 ------DOF2 --------->TOE2(3)--------------->AtSPL8<---------ANAC58                 --------->MYB52(1)   ttcttcttcttcttcctcaatgctaaagtgttttggacctttttgcatagattgcttcctcaatcaaggaaaacagaaacaaaaaaaaacgaaagcgttg  3432500                                                                       <---------ARR11(3)                                                                       --------->ARR11(3)                                                                      <---------CCA1(2)                                                                     <---------AHL20(2)                       --------->ATHB12                             --------->YAB1             <---------ALFIN1                   ----------->RAV1(2)<---------YAB1           --------->CCA1(2)                    ------>MYB83     <---------ICU4           <------ZmHOX2a(2)                    ------>MYB46(1)  -------->ATHB1          <---------ARR14(2)                  --------->DREB2C(2)--------->YAB1          --------->AGP1                      --------->DEAR3(1) --------->ATHB51          --------->ARR14(2)                  --------->MYB46(3) <--------HAHB4          <---------ARR11(3)                 --------->DEAR3(2) <---------YAB1            <---------ANAC46          --------->ARR11(3)                <---------At5g28300 --------->ICU4       --------->ZAT2 --------->YAB1       <---------ATHB12     <-----------GT1---------->DOF2      ------------>CBF   aaatcaaaacaagatccacatccgatgatttgggcccaactatattcaccgactggcccataaagaattattatatcttctcacaatagctggggtttat  3432600                                                      ------------>CBF                                                     --------->ANAC58                                                  --------->WRKY18(1)                                                --------->ANAC58          --------->HSFB2a(2)                         <---------SPL7    <----------ARF1           <---------HSFC1(2)                        <---------ANAC58   ----------->HVH21    <---------HSFB2a(2)                        <---------ANAC58 <---------ANAC58     ------>ZmHOX2a(1)             ---------               <---------YAB1            <---------ANAC46 --------->ARR14(2)  ---------->DOF2             --------->AHL20(2)          <---------ANAC58 <---------ARR14(2) <------ZmHOX2a(1)             --------->ATHB51      <---------TOE1(3) --------->ANAC58--------->HSFC1(2)  --------->CCA1(2)             <---------AHL20(2)<----------DOF2  --------->ANAC58--------->HSFB2a(2) ---------->DOF2 < <------------CBF <-----------GT1  <---------TOE2(3)--------->WOX13(1)    <---------HSFB2a(2)   -----   ttgtattgttctgaattatttttctggcttacgctctaaggttgtgtgacaagtcaagcaattcctcgagaagcctctaggaaagtgaaagagatggtga  3432700                                                                       ----------->GT1                                    <---------ARR14(3)                 <------MYB83                                    <---------ARR11(3)             --------->ARR11(1)                                    --------->ARR11(3)             --------->ARR14(2)                                    <---------ARR14(2)             <---------ARR14(2)                          ---------->DOF2                   <---------ANAC58 -->GT1               ---------->DOF2                       <---------ANAC58            --------->TOE1(2) ---------GLK1(2)   --------->ZAT14 --------->ARR14(3)      <---------ANAC46   <---------MYB46(3) ----->DOF2         <---------ZAT14 <---------GLK1(2)   --------->LBD16<------MYB46(1)--------->ZAT6-   aagaaactcgtcttggaatcactgcaaagaaagatgaagattttgggaagtggtattccgaggcttgtagatttggtgaattggttgaatactacgagtc  3432800                                                               --------->HSFC1(2)                                                               <---------HSFB2a(1)                                <---------At4g35610            <---------KAN4(1)                                --------->At4g35610            --------->HSFB2a(1)                        <-----------HVH21            --------->TOE2(3)                    --------->ANAC58                ----------->GT1                             -----                    --------->ANAC58        <---------ARR14(2) <---------HSFC1(2)           --------- --------->DOF2     --------->ANAC46      ------->TEIL        ------->TEIL                  =========   tgtaaagggatgctacattctcaagccatcaggcatcagcgatgaatatttggaacgttatacgaacgttcttcaacgctgagattgagaagatgaaagt  3432900                             ------->MYC2                             ------->MYC3                             <-------MYC2                            --------->ANAC58                            --------->TGA1a                            ================================bZIP_DOF                            <---------O2                            <---------TGA1a                            --------->O2                                           <---------ANAC58                            --------->ANAC55(1)            --------->ANAC58        <---------ANAC46                            --------->ANAC58               --------->ANAC58        <---------ANAC58                            --------->ANAC55(2)            --------->ANAC46     <--------P                            <---------ANAC55(2)          <---------ALFIN1     <---------MYB46(3)              --------->LBD16<-------MYC3               <---------ZAT14    --------->LBD16             <---------HSFB2a(2)                        --------->ZAT14   <-----------RAV1(2) ---->ALFIN1 --------->HSFB2a(2)<---------GLK1(2)      --------->AtMYB61  <---------HSFB2a(2) ->DOF2     <---------LBD16 --------->ANAC46     ---------->DOF2          --------->HSFB2a(2)      -- =====================================bZIP_DOF<------ZmHOX2a(1)       --------->At4g35610          <-   ggatgaatactatttcccgatgtttgtaacacgtgattctcttgagaaggagaaagaccacactcaagggtttgctccagaggttgcttgggttacaaga  3433000  Previous    Next  AGI:  At5g10870.1    Description:  ATCM2 (CHORISMATE MUTASE 2); chorismate mutase. similar to CM1 (chorismate mutase 1), chorismate mutase [Arabidopsis thaliana] (TAIR:AT3G29200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44342.1); contains InterPro domain Chorismate mutase; (InterPro:IPR002701); contains InterPro domain Chorismate mutase of the AroQ class, eukaryotic type; (InterPro:IPR008238) Range:  from: 3430547    to: 3432463    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g10880.1    Description:  tRNA synthetase-related / tRNA ligase-related. similar to tRNA synthetase class II (G, H, P and S) family protein [Arabidopsis thaliana] (TAIR:AT3G62120.1); similar to tRNA synthetase class II (G, H, P and S) family protein [Arabidopsis thaliana] (TAIR:AT3G62120.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40229.1); contains InterPro domain Prolyl-tRNA synthetase, class II, C-terminal; (InterPro:IPR016061); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain Prolyl-tRNA synthetase, class IIa, prokaryotic-type; (InterPro:IPR004499) Range:  from: 3432694    to: 3433868    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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