Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------ZAT14                                                                                  --------->At4g35610                                                                     --------->ANAC46       <-----------RAV1(2)                                           --------->ANAC58      <-------TEIL                                                   --------->ANAC58   <---------ANAC58                                                 <---------LBD16 --------->ZAT14   <---------ANAC58        <---------ANAC46                 <--------P            <---------At4g35610 -->ZmHOX2a(1)             <---------ANAC58               ----------->GT1  <---------REM1(1) >ARR14(2)                 <---------ANAC58              ------>NtERF2     <-----------RAV1(1) -GLK1(2)      <---------At4g35610                       --------->LBD16  <---------ARR11(3)     ---- -ARR14(2)    <---------ANAC46                         <---------LBD16    --------->ARR11(3)<--------   tccatacgtgcaggttgagttgattcagagcgtgaacaaaacacagaaggctgaatcgccgggttaatcacacggagatgttgcagcacagagcctttca  3430100                                                            ------>MYB46(1)                                                            ------>MYB83                                                          ------->GAMYB                                                        --------->ANAC58             ------>ZmHOX2a(2)                                                        --------->ANAC58            <------ZmHOX2a(2)                                                       ------->GAMYB               --------->ARR11(3)                    <------ZmHOX2a(1)                 --------->MYB46(3) ------>ZmHOX2a(1)                   --------->HSFC1(2)                 <---------MYB55(2) ===================HOX2a_HOX2a                   --------->HSFB2a(1)                <---------MYB111(2)==================HOX2a_HOX2a                   <---------HSFB2a(1)           <-----------HVH21      --------->TOE2(3)          --                   <---------HSFC1(2) ------->TEIL <---------ETT(2)  <---------ARR14(2)   <---------AHL20(2)          --------->LBD16     <---------ALFIN1--------->At4g35610    --------->ARR14(2)  --------->AHL20(2) ----->ANAC46 <-----------------------TaNAC69(2)------->GAMYB  --------->YAB1      --------->AGP1 <-- --DOF2 <---------LBD16------>ZmHOX2a(2)      <---------At4g35610 <---------ICU4   <---------ARR11(3)   caacatttccaccggagacgaaggatcgaatcacaccttgcatctttcaactgtcaacaaccaaataatcagttcctcaaaacgagatctataaaatcaa  3430200                                                                                  ------>ZmHOX2a(1)                                                                                 --------->TOE2(3)                                                                                 --------------->AGL15                                                                                 <---------------AGL15                                                                                ----------------->AGL1                                                                                <-----------------AG                                              ------>ZmHOX2a(1)                 <-----------------AGL1                                             <---------MYB59                    ----------------->AGL2                                            ------>ZmHOX2a(2)                   ----------------->AG                                          --------->ARR11(3)                    ----------------->AGL3                                          <---------ARR11(3)                    <-----------------AGL2                                        <---------KAN4(1)                       <-----------------AGL3   ---------->DOF2                      --------->KAN4(1)                     --------->ARR14(2) ------->At4g35610              ---------->DOF2    --------->TOE2(3)          <---------ARR14(2)   -- -------ARR11(3)     ------->TEIL      <---------KAN4(2)                   --------->MYB46(3)     ---   gagctaaaagaacgagtctaatgaaactagatcgaaaagagaatgatcctaattcttaaaccgagtgtatttgatcaacaaatcctaaaatggaaagttt  3430300           ----------->GT1         <-------TEIL        --------->GLK1(2)                                                                   <--------       --------->ARR14(2)                                                                   <--------       <---------GLK1(2)                                                                <---------ANAC58       <---------ARR14(2)                                                               <---------ANAC58    --------->YAB1                                                            ------>ZmHOX2a(2)   <---------ATHB12                                  --------->TOE1(2)       <------ZmHOX2a(2) --------->WOX13(1)                            <-------TEIL                 <---------ARR11(3) ---->ZmHOX2a(1)      --------->At4g35610     --------->GLK1(2)             --------->ARR11(3) ------ ------>TOE2(3) ---------->DOF2         <------ZmHOX2a(1)           >>>>>>>>>TBF1  --------->ALFIN1   cctcaatcagattcagtaaaaagcatcagagatagtgaagaaggagagattcagacctgagattagagaagaagaagagatcgtagtggagcttgaggtt  3430400                                                                                                 ----                                 --------->WRKY38(1)                                             ----                                 --------->WRKY12                                              ------                                 ----------->HVH21                                            -------                               --------->At4g35610                                            <------                               <---------At4g35610  <---------ZAT14                          --------                               <---------ZAT2    <---------ANAC58                     <---------ICU4 -TOE2(3)                      --------->ZAT2    <---------ANAC58                     --------->YAB1 -TOE1(3)                      ----------->RAV1(2) --------->ALFIN1                  --------->ICU4 --->ALFIN1                  <-----------RAV1(2) <---------ANAC46      *TSS        --------->YAB1<---   gagcttgaaaaccctagagaatggggaagagacagctgaccagagagagttgagtggagagttttttgaagggttctctaatggataatcatcaaatata  3430500                                                     --------->AHL20(1)   <-----------GT1                                   --------->ARR11(3)                            -- <---------AHL20(2)                                  <---------ARR11(3)                            <- ----->AHL20(2)                               ------>ZmHOX2a(1)                                   <-- ------->TBP                                 --------->TOE1(3)                                    --- ----->TBP                              <----------DOF2            --------->AHL20(2)   <---------ANAC58 -->AHL20(1)                         <-----------GT1--------->RVE1(1)              --------->ALFIN1-- ---AHL20(1)                     <---------DAG2     --------->CCA1(1)        <---------YAB1       <-- ->AHL20(2)                      <----------DOF2--------->AHL20(2)<---------AHL20(2)    <---------ANAC58 ------AHL20(2)               ------>NtERF2  --------->TOE2(3)   --------->AHL20(2)<-----------RAV1(1)   taaataaacgattttcgatagcgaaatactggcgacttttttcttttccttaaaatatcttacaaaatttaaaatagtgatgactgtgttgcttcattca  3430600                                                                                   --------->YAB1                                                                                   --------->AHL20(2)          --------->ARR14(2)                                         <---------ARR14(2)          --------->ARR11(3)                                       ----------->ARR10          <---------ARR14(2)                                     <-----------------AG         <---------CCA1(2)                                       ----------------->AGL3       --------->YAB1                                            ----------------->AGL2 ------>ATHB1                                                    <-----------------AGL1 --------ICU4                                          <----------DOF2      --------->CCA1(2) -------ATHB51                                         <---------DAG2--------->ARR14(2) ------>ICU4                  --------->PCF2        <---------ALFIN1 <---------GLK1(2) ------->YAB1   <<<<<<<GRF7 ------->GAMYB     ---------->DOF2    ----------------->AGL1 -------ATHB12------>ZmHOX2a(1)  <---------ALFIN1--------->PCF2  <-----------------AGL2     <--------   attattctatcatatcctgacaaatatcaacaggcccacttaaaaacttaaggcccactttaacagggccagatttggatacaaataatattcaatcgag  3430700                        ------->GAMYB                  --------->AtMYB61                                              <---------ALFIN1                  --------->TOE2(3)                                             ------>ZmHOX2a(2)            --------->ANAC58                                      --------->ANAC58  <---------DAG2            --------->ANAC58                          --------->LBD16          <------ZmHOX2a(2)         --------->ARR11(3)                          --------->ANAC46         ------->TEIL         <---------ARR14(2)                         <---------LBD16   --------->ANAC58         <---------ARR11(3)                --------->ANAC58       --------->ANAC58  <----------DOF2         --------->ARR14(2)     <---------ZAT6      --------->LBD16   --------->ANAC58  <-----------GT1 <---------ANAC46 --------->TOE1(3)        --------->ANAC46  <---------ANAC58 <---------ARR14(2) -ATHB12 <---------GLK1(2)--------->ZAT2   --------->ANAC58  <---------ANAC58 --------->ARR14(2)   acgacgtagaagatactcaacctcaacgagcttagtgagagggataagccattccccgtagatgcgagaggcaagcaatggatccactttatacttcttc  3430800                                                              <---------ALFIN1                                                             --------->ZAT14                                                             <---------ZAT18                                                             --------->ZAT18                       --                                                             <---------ZAT14                       --                                                     <----------DOF2                              ---                                                   <---------At4g35610                            ---                                               --------->ARR14(2)                                 ---                             <-----------GT1   <---------ARR14(2)         <-----------GT1<----------DOF2   ttactctcatcgccatagccagagttgaattttacttcttgtccaaacgtttctgctttcttctgcactctcttcttaaccatttcttctactttctcaa  3430900          --------->REM1(1)         <-------TEIL      --------->At4g35610   <---------At4g35610 <---------WRKY12                                                                           <-------- ------->TOE1(3)                                                                            --------- ------->TOE2(3)                                                <---------CCA1(2)           --------- ------>ANAC46                                                --------->YAB1      --------->At5g28300 ------>ANAC58                --------->ZAT14          <---------ANAC46       ----------->RAV1(1) ------>ANAC58---------->DOF2------>ZmHOX2a(1)         ----------->GT1 --------->AHL20(2)  <---------GLK1(2)   acgtcaacagcttcatcaaagcctctctatcctacagtcgaaaatcaaacgattatggtgtgaatcatatcattttaaaaccacagtgaaacagaatcca  3431000  Previous    Next  AGI:  At5g10860.1    Description:  CBS domain-containing protein. Identical to Uncharacterized protein At5g10860, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9LEV3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47271.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21273.1); contains InterPro domain Cystathionine beta-synthase, core (InterPro:IPR000644) Range:  from: 3428892    to: 3430471    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g10870.1    Description:  ATCM2 (CHORISMATE MUTASE 2); chorismate mutase. similar to CM1 (chorismate mutase 1), chorismate mutase [Arabidopsis thaliana] (TAIR:AT3G29200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44342.1); contains InterPro domain Chorismate mutase; (InterPro:IPR002701); contains InterPro domain Chorismate mutase of the AroQ class, eukaryotic type; (InterPro:IPR008238) Range:  from: 3430547    to: 3432463    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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