Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      ------>MYB46(1)                                                    ------>MYB83                 <---------MYB52(2)               <---------MYB59           <---------ZAT18                        <---------MYB111(1)          <---------ANAC46                    <---------ARR14(2)                              <------   ---------->DOF2  -------->P                --------->ARR14(2)                <---------RAP2.6(2) ------>DOF2    <---------At4g35610          <---------At4g35610               --------->RAP2.6(3) ->At4g35610    --------->At4g35610          --------->At4g35610 --------->ANAC46       <----------DOF2 ->ZAT2  <---------At4g35610                <---------TOE1(2) ----------->RAV1(1)   <----------DOF2 --At4g35610------>NtERF2          --------->YAB1 --------->AtMYB61          <---------ARR14(2) --ZAT2  --------->At4g35610 ----------->RAV1(1)  <---------MYB46(2)         --------->ARR14(2)  ----   aaagccaaagcagcgggcaacttaccaagaacaacaatagcaatcgcagataccaaaccaagaacaccagaaactacaaaatacggctttcttttgtaac  3422800                                                                                                 ----                                                                                             --------                                                                                             <-------                                                                                             <------NtERF2                                                                                             --------                                                                                         <---------MYB46(3)                                                                                    --------->MYB46(3)                                                                                  --------->MYB52(1)<                                                                           <---------At4g35610   <---                                                                           --------->At4g35610<------                                                                 ------->GAMYB   --------->MYB46(3) < -----GT1 <---------ALFIN1                            ----------->GT1   ---------->DOF2<---------MYB52(1) ----->TOE2(3)                            ----------->HVH21   <-----------GT1 --------->ZAT18<-------   ctttgatagggaacacatcggtgaagagaccccaaatgggtctcatgacccatggaatgtaatataaccccatgtaaagctgcacaaccgatggctgcac  3422900                                                                                 <---------ALFIN1                                                                              <------ZmHOX2a(1)             --------------->AGL15                                          --------->ANAC58    <----      --------->ARR11(3)                                                --------->ANAC58        <----      <---------ARR11(3)                                                --------->ANAC58        ----- --->PIF5    <---------HSFB2a(2)                                       --------->SPL7           ----- ->ZAT18     --------->HSFB2a(2)                                       <---------ZAT14         ------ --ZAT18     <---------------AGL15                                     --------->ZAT14      --------- ->ZAT14    ----------------->AGL2                                   <---------SPL7     ------>MYB46(1) ---------ANAC58                                                     --------->ZAT14    ------>MYB83 ----PIF5   <-----------------AGL2                                 --------->ANAC46<---------ALFIN1 < ---ALFIN1  ----------------->AGL3                               ------------------>SPL14   --------- ---------ANAC58 --------->YAB1  <----------DOF2                 <-----------GT1 --------->AtMYB61 <- --ZAT14 <----------DOF2  ----------->HVH21              <---------MYB52(1) --------->ANAC58---------   ttgctggacatctttccagtaatagtctgtgacgactttgaatatcgaaccagagaacccttggtttacaccgtacacaaggaccacacctagcacgaag  3423000 -----ZAT2 -----At4g35610                                                                                     = ---->ZAT2                                                                                          - ---->At4g35610                                                                                    -- ->TEIL                                                                                  ------>ZmHOX2a(2) >ANAC58                                                           <---------ARR14(2)    ============ ---------TOE1(3)                                         --------->ANAC58   <----------DOF2      <-- >ANAC58                      --------->ATHB12            --------->ANAC58  <---------ANAC58      --- ----------RAV1(2)           --------->MYB46(3)           ----------->HVH21 <---------ANAC58   <----- >ANAC46     <<<<<<<ZML2   <-----------GT1     --------->YAB1      --------->ARR14(2)  <---------ARR11(3)   ctcaggtttagcctagaactcagcatttgtaaccattggaagggctgaattagaactgagacgacagcgtttcttcttgcttttgtcttgatctcagaat  3423100                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                              <------ ======================HOX2a_HOX2a                                                            <------ ----->ZmHOX2a(2)                                                                      <---------YAB1 ------->At4g35610                                                              <------ZmHOX2a(1) ======================HOX2a_HOX2a                                   --------->WRKY12  ------->TEIL - -------ARR11(3)                                                  <---------ANAC46--------->At4g35610 ------>ARR11(3)    ----------->GT1                          <---------AtLEC2   ===================== ----KAN4(2)    <------ZmHOX2a(1)                      <---------ZAT6--------->WRKY38(1) --------->TOE1(2)   gatctgaaattggttttaggagaggtttatcgtctgagaagaatttctcagtttctagtgtttccatggtgttgactgtttaggagatgaacattggatc  3423200   --------->YAB1 ->ZmHOX2a(2)                          <---------YAB1 ----At4g35610                         ------------>CBF --->At4g35610                        <-----------GT1     <----------DOF2 -->ARR14(2)                     <---------MYB52(1) --------->GLK1(1) ---AGP1--------->RVE1(1)       --------->TOE2(3)   <---------GLK1(1) ---ARR14(2)                   <---------ICU4   <---------TOE2(3)                                <--- -------->GLK1(1)        <----------DOF2 --------------->AGL15            <---------TOE2(3)     ----- ==HOX2a_HOX2a        *TSS     --------->YAB1 ---------->DOF2           ---------->DOF2    --------->ANAC46   tgaaatcaaaatatcgagagcaagagcctttaatcgttattttcaatgtaaaggaaatgccttttagactttcaaaaaggtttagacattcacacacgag  3423300                                                                      <---------ANAC58                                                                      --------->bZIP60(1)                                                                      <---------bZIP60(1)                                                                      <---------bZIP60(2)                                                                      <---------ANAC46                                                                      <---------ANAC58                  =====================bZIP_DOF                       --------->O2                  ---------->DOF2                                     --------->TGA2(1)               --------->YAB1                                         <---------O2              <---------AHL20(2)                                      <---------TGA2(1)           <---------ARR11(3)                                        ----------->STF1           --------->AHL20(1)                                       <---------TGA2(2)           <---------AHL20(1)         --------->YAB1               ----------->HVH21 -------->P           --------->AHL20(2)  ----------->HVH21                   ----------->TGA1  --------->MYB52(1)          --------->CCA1(2)  --------->O2                     --------->ANAC46      ------->GAMYB         <---------ARR11(3)  ======================================bZIP_DOF        <---------MYB52(2)         --------->ARR11(3)  --------->TGA1a                  --------->ANAC58     --------->MYB46(3)     ==================================bZIP_DOF         <----------DOF2   <----------DOF2        ----     ---------->DOF2       <---------ALFIN1             --------------------->WRI1 <---------MYB111(2) ---ZmHOX2a(1)<---------YAB1 <---------O2    <---------At5g28300   <---------ATHB12<---------MYB55(2) ------>GT1--------->ARR11(3)<---------TGA1a<-----------GT1   --------->ANAC58     <---------MYB111(1)   gaaaaacaaaagatatattataaagtttcccacttgacaatgacatttaccttgttgactttgtaagcaatgacgtctttcttcaactaccagtctgaaa  3423400                                                                        --------->ANAC58                                                                        ------------------------>ANAC81                                                                  ------>ZmHOX2a(2)                                                                 <------ZmHOX2a(2)                                                                --------->ARR11(3)                                                                --------->ARR14(2)                                                                <---------ARR14(3)                                                                <---------ARR14(2)                                                                --------->AGP1                      <---------DAG2                            --------->ARR14(3)                      <----------DOF2                           <---------ARR11(3)                ------>MYB83                                    <---------AGP1     ---------->DOF2        --------->ANAC58                                  ----------->HVH21   --------->DAG2        --------->ANAC46                                 <---------WOX13(1)  ---------->DOF2        --------->ANAC58                               --------->ATHB12 --------->ANAC58           <- ----->GLK1(2)  ------>MYB46(1)       <-----------GT1 <---------YAB1  ---------->DOF2----------->GT1   ttctacaaaaacgaaaccaaatcgctttattagccaaaattcacaaactcgatagtatgattgacagatcttgaaagcaaaaagagaaagtcaaatgttt  3423500                                      ------->GAMYB                                     <---------MYB52(2)                                     --------->MYB46(3)                                --------->TOE2(3)                                                 <--     <---------ALFIN1       --------->YAB1                           --------->AHL20(2)       <------    --------->MYB46(3)     <---------ATHB12                          --------->YAB1         --------- --------At4g35610      ------>ZmHOX2a(1)   --------->AtMYB61       <---------ATHB12 ---------->DOF2   catcttcccaccgaaactcaaaaatcctaatcaacatcaacaaacacctaaacaattacttcaaaatccaattaaaaaatagagaaggaaagcgatatgc  3423600                          --------->GLK1(1)                          --------->GLK1(2)                         <---------GLK1(2)                   <----------DOF2                --------->ARR11(3)      ---------->DOF2                                   ---------->DOF2 -------At4g35610<---------YAB1   --------->ANAC58                                     *TSS---------- -----RAV1(1)   <---------ARR11(3)--------->ANAC58 ----------->TBP                   ----------->GT1 >CCA1(2)     --------->ICU4  --------->ANAC46  <-----------------AGL3              --------->YAB1---   tgcttcgttggaggtcattatctttgagattcccacaagctaaaaagactactatatatgactagagagtcatggctagacactaatcagaaaaaagaga  3423700  Previous    Next  AGI:  At5g10820.1    Description:  integral membrane transporter family protein. similar to integral membrane transporter family protein [Arabidopsis thaliana] (TAIR:AT1G79710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44359.1); contains InterPro domain Biopterin transport-related protein BT1; (InterPro:IPR004324); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 3420828    to: 3423222    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g10830.1    Description:  embryo-abundant protein-related. similar to embryo-abundant protein-related [Arabidopsis thaliana] (TAIR:AT4G22530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67377.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) Range:  from: 3423687    to: 3424721    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version