Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                ------>MYB83                                                                                              ------>MYB46(1)                                                                                      <---------ICU4                                                                                      <--------ATHB1                                                                                      --------->YAB1                                                                                      -------->HAHB4                                                                                      --------->ATHB51                                                                                      <--------HAHB4                                                                                     <---------ATHB51                      ----------->RAV1(1)                                            --------->AHL20(2)                   --------->TOE2(3)                                              <---------AHL20(2)                   --------->TOE1(3)                                             --------->AHL20(2)            --------->YAB1           ---------->DOF2                    --------->ATHB12 <-----------GT1         ---------->DOF2--------->YAB1                                 <---------YAB1--------->ICU4      ----------->RAV1(1)     <---------ICU4         <---------ZAT14   --------->ICU4<---------YAB1      --------------->AGL15   --------->YAB1         --------->ZAT18 --------->YAB1--------->YAB1     ----------------->AGL1  <---------YAB1     --------->ICU4      --------->ICU4--------->AHL20(2)   tcttgttgccacaaagataaacctcaacataatcataaccaaagtcaacaatgagtagactagttagagaatgatgattcgaaattaataattaccatcc  3420200                                     <---------CCA1(2)              --------->ATHB12                                   --------->TOE2(1) --------->GLK1(1)                --------->YAB1     --------->TOE1(1) <---------GLK1(1)   <---------ANAC58      <---------ANAC46            ------>ZmHOX2a(1)  <---------ARR14(2)  <---------ANAC58 <---------ANAC58          ---------->DOF2  --------->ZAT2         <---------YAB1         <---------YAB1 <---------ANAC58        --------->AtLEC2   <---------ZAT2  ----------->RAV1(1)      <-----------RAV1(1)   atagcttggcctatagagtcatagtccatgaaagtcctcgtagctctgctcggagaattctgcaacaagatgattgtgtgcctactactgttgtgattag  3420300                                                                                                   --                                                                                            ---------                                                                                          <---------MYB52(2)                                                                                      <---------MYB52(1)                                                                                     --------->LBD16                                                                                    <---------ANAC58                               <---------ZAT2                                       --------->ANAC55(2)              ---------->DOF2  --------->At4g35610                                  <---------ANAC55(2)       ---------->DOF2         <---------At4g35610  --------->YAB1                  <---------ANAC55(1)    ----------->RAV1(1)--------->YAB1              <---------ATHB12                 <---------ANAC46   --------->ANAC46   <---------YAB1             --------->WOX13(1)                 <---------ANAC58 --------->ANAC46  ----------->GT1   --------->YAB1<<<<<<<<<ARR2    <-----------GT1 <---------HSFB2a(2)   cctacacaacaaagaagaaagttgataatagtcagcttataagaactgagacaatcaaaacaagtttgaatttccttctctatgttccgtaaactaacga  3420400                                                                        <---------GLK1(1)                                     --------->ARR11(3)                 --------->GLK1(1)                                     <---------ARR11(3)                <---------ARR14(2)                                <------ZmHOX2a(1)         ===================HOX2a_HOX2a                                =================================HOX2a_HOX2a        <---------GLK1(2)      <---------MYB52(2)         <------ZmHOX2a(2)    --------->At4g35610       --------->ANAC58           <---------ARR11(3)  --------->YAB1             --------->SPL7              <-----------ARR10 <---------ATHB12         <---------ANAC58           --------->ZAT6    --------->ARR14(2) --------->ICU4           <---------ANAC46         ------>MYB46(1)    <------ZmHOX2a(1)             < ------->GLK1(1)          <---------ANAC58         ------>MYB83--------->MYB46(3)            <------- >MYB52(1)        <-------TEIL--------->ANAC58   <---------MYB59  ---------->DOF2        --------->HSFB2a(2)   gaaatcatcagaaactgagattcaaactgcgtaaggaacgatattcgaaaacctaacacgatctaaccaaaaggatttgctcaaatttcttcgcgattga  3420500                                  <------ZmHOX2a(1)                                       <---------TOE1(3)                              <---------MYB52(1)                                <---------At4g35610  <------ZmHOX2a(1)  ---------->DOF2                                            <---------ZAT2 ---------TOE2(3)  --------->ANAC46                                     <---------bZIP60(2)        <- --WOX13(1) --------->ZAT6  <---------HSFB2a(1)                --------->ARR11(3)         <---------TOE2(3)   ctaaggaatcactaaaactacacaaaaggaacgttaggagaagaaatcgattaccatcttcgagtgatattgtgacttcgctagcagagtttgaggttta  3420600                                                                   ------>MYB83                                                                   ------>MYB46(1)                                                                   ----------->RAV1(1)                     >>>>>>>>>TBF1                       ----------->GT1           ----------->GT1                  >>>>>>>>>TBF1     *TSS             --------->ARR14(2)    ----------->GT1       ------------------------>ANAC81     ----------->GT1    <-----------GT1      --------->YAB1 ---------ID1  >>>>>>>>>TBF1  <-----------GT1        <---------ARR14(2)   <----------ID1            <   gacgacgaagacgagaagaagaagaagaagtttcactgtttgagagagaaaaacgaatactgtataacccaacaagagggcaaaatcgtaaaataacata  3420700                                           --------->ANAC58                                   --------->ANAC58                              <---------------AtSPL3                              <---------------AtSPL8                            --------->CCA1(2)                     --------->bZIP60(1)   --------->ANAC58                     <---------bZIP60(1)   --------->ANAC46                     --------->TGA2(1)    --------->RAP2.6(3)                  ----------->HVH21--------->ANAC58                <---------ANAC55(2)<----------ID1        <----------DOF2      ---------->ID1 <---------TGA2(1)   --------->MYB52(1) --------->AHL20(2)     <-----------HVH21     <---------ARR14(2)           --------->TOE2(3)    <-----------RAV1(1)    --------->ARR11(3) <---------ANAC46                 --------->ANAC46 ---------GLK1(1)<-----------HVH21--------->SPL7   ------->TEIL   <---------YAB1          <---------At4g35610   gggtctctgtcgcttaacatgtgacatcagatatagtacgacaaaacggcatgtatttcctttaaaatatgaaaaaactacaagctgtttccatctgatt  3420800                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                    ---------->DOF2            <----------DOF2             <---------ZAT6                          --------->ANAC58-----        ---------->ID1                <---------At5g28300                       --------->ANAC58-----  <---------ARR11(3)                 <-----------GT1                        --------->HSFB2a(2) <----  --------->ARR11(3)          --------->MYB59                               <---------HSFB2a(2) <----  <---------GLK1(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <----------DOF2        <-----   agtagattttgtttctttgaaattgttcatgttaggcatttactgttcgaaatgtttcatgttatacaaaatagctttacagaagcaaaagtttaatgtc  3420900     <---------ICU4     --------->YAB1    <---------YAB1  <---------ICU4                                                                      --------->ANAC58  --------->YAB1                                                        <---------HSFB2a(2) --------->ICU4                                                         --------->HSFB2a(2) <---------YAB1                                                     <---------GLK1(2) --------->ANAC58 --------TGA1                                                    =======================HOX2a_HOX2a -----TGA2(1)                                                    ------>ZmHOX2a(2)   <--------------- ---->TGA2(1)                                       ====================================HOX2a_HOX2a ---->ETT(2)                       --------->ANAC46 <------ZmHOX2a(2)--------->GLK1(2)--------->ANAC46 ---->bZIP60(1)                  <---------ALFIN1  --------->ARR11(3)<---------ARR14(2) -----bZIP60(1)          <----------DOF2      <-------TEIL   <---------ATHB12<---------TOE1(1)    --- -----ETT(2)      <---------WOX13(1)         --------->CCA1(2)--------->ATHB12   <------ZmHOX2a(1)--- ------STF1    <---------YAB1  ----------->RAV1(1) <---------ARR11(3)--------->ARR14(2)      --------   gtcatcatcatcatcttctgattgtttctttggcaacacatcagaaggtacaagatcatccaaatgatcggaatctggaacgaggaaaacgaaacacaca  3421000                                                                         <---------ANAC58                                                                   --------->AtMYB61                                                             ----------->HVH21                                                           <---------TGA1a                                                           --------->O2  <---------ANAC46            <---------AHL20(1)                             <---------O2  <---------ANAC58     ------- <---------TGA1a                                           <---------ANAC58                  -------- <---------bZIP60(2)             --------->ANAC46          <---------ANAC58                  -------- <---------ANAC58      --------->YAB1                      =====================bZIP_DOF   <---------ALFIN1 <---------O2      ------>ZmHOX2a(1)                       <---------ANAC55(2)             --------->AtMYB61 <---------ANAC58 --------->TOE2(3)            --------->LBD16  <---------bZIP60(1)       --------->MYB46(3) ------WRI1 --------->AHL20(1)   --------->ANAC58   <---------ANAC58    <-----------------------TaNAC69(2) -------->HVH21   <---------ANAC58        --------->GLK1(1)--------->TGA1a  --------->REM1(2)-------- -------->TGA1    <---------ANAC58        <---------GLK1(1)--------->ANAC55(2)    --------->MYB46(3) ->ANAC46   <---------ARR11(3)   --------->ANAC58   <---------ANAC58 ---------->DOF2    --------->ANAC46   gtgacgagtctcaaaatattccttatcagaatcacgagccagagatttccgaaatcgtgtctcgtgacaccaaaagcgtgaagaacaaaccctccacccc  3421100  Previous    Next  AGI:  At5g10810.1    Description:  ATER (Arabidopsis thaliana enhancer of rudimentary homologue). Identical to Enhancer of rudimentary homolog [Arabidopsis Thaliana] (GB:Q96319;GB:Q9LEV8); similar to unknown [Picea sitchensis] (GB:ABK23389.1); contains InterPro domain Enhancer of rudimentary (InterPro:IPR000781) Range:  from: 3418667    to: 3420636    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g10820.1    Description:  integral membrane transporter family protein. similar to integral membrane transporter family protein [Arabidopsis thaliana] (TAIR:AT1G79710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44359.1); contains InterPro domain Biopterin transport-related protein BT1; (InterPro:IPR004324); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 3420828    to: 3423222    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version