Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->LBD16               <---------ANAC55(2)               <---------ANAC46               <---------ANAC58               <---------ANAC55(1)              ------>ZmHOX2a(2)          ----------->HVH21      <---------At4g35610                              <-----------GT1                       ------>MYB83      ----------->RAV1(2)                         <---------AHL20(2)                         ------>MYB46(1)    <-----------GT1                         <---------DAG2                                  --------- ----------DOF2<---------ANAC58             <----------DOF2                             <-----------GT1 ---LBD16<-----------HVH21            <-------TEIL--------->AHL20(2)            --------->YAB1   gacttttcacctgtgatccgtgaatgcatagaagaaaacgtccatactttttttaattaacatgtttctcaatgtaatagaaacataattctaccaatct  3418000                                                                    --------->GLK1(1)                                                                    <---------GLK1(1)                                                        --------->ANAC58                                                        --------->ANAC58                                                     <---------REM1(1)              --------->TOE1(3)                                                 --------------->AGL15         <---------MYB52(2)<---                                                 <---------------AGL15    --------->ANAC46 --------->GLK1(2)                                           --------->ARR14(2)   <---------ANAC46    --------->TOE2(3) >WOX13(1)       <---------ATHB12          --------->AGP1       --------->ETT(1)  -------->P     <---   acatgatcaaaacaattcaatgaaacacagaaaaactagcctccagttctactagatgaagcaatgtcgggtttccaagagactaaccttgagaatcagg  3418100           --------->ATHB12                         ----------->RAV1(1)          <---------YAB1 <-----------HVH21        --------->At4g35610        --------->YAB1 <---------WOX13(1)      --------->At4g35610            --------->ANAC46       <---------YAB1 <---------ANAC58         <---------At4g35610            --------->ANAC58  <---------At4g35610 <---------ANAC58         <---------ZAT2                 --------->ANAC58 ------ANAC58        --------->ATHB12          --------->ZAT2                --------->LBD16 ------ANAC58      <---------WOX13(1) ---------->DOF2                        <---------LBD16   cttgagcttattatcattgggattgattgtcacctctaacaaaagtcttagctgcagcattatccccttgaaacgattccacggactcttgatacagacg  3418200                                    <---------AHL20(2)                                   <---------AHL20(2)                                   --------->AHL20(2)                   <---------At4g35610                               --------->AHL20(2)                       --------->At4g35610                            --------->YAB1  ----------------->AG      <--------P                            --------->TOE1(3)                  --------->ARR14(2)                          <---------At5g28300                  <---------ARR14(2)             --------->At4g35610   <---------AHL20(1)          --------->ARR11(3)            --------             <---------At4g35610   --------->AHL20(1)         <------ZmHOX2a(1)          <---------MYB52(2)          ------>ZmHOX2a(1) --------->TOE2(3)               <---------TOE2(3)  ---------->DOF2   agctgtttcatcctccgctctctgcatttaccataaatttattcaaaccaatagaggctattgaggattttggtagctaagaaaagaagaaacaaacctt  3418300                                                                       <----------DOF2           ----                                                           ---------->DOF2      --------->MYB46(3)                            --------->HSFC1(1)          <---------HSFB2a(2)    ------>MYB83    ------          <<<<<<<<<TBF1     <---------HSFC1(1)          --------->HSFB2a(2)    ------>MYB46(1) ------     <---------ANAC58       <---------HSFB2a(2)        ------>ZmHOX2a(2)  <-----------GT1     <------     <---------ANAC58       --------->HSFB2a(2)--------->LBD16 --------->ARR11(3)    <---------DAG2 ->HSFB2a(1) <<<<<<<<<TBF1 <---------LBD16    <---------LBD16  <---------ARR11(3)    <----------DOF2   cttcttggcttcttcttcttctctgtgtttctggaacggtgttttcttccagggtgatcgagaaagaactcatctttcaccatccaacttttctcagaat  3418400                            <------NtERF2                            --------->ANAC58                            --------->ANAC58                       --------->ANAC46                                                  --------->ARR11(3)                       --------->ANAC58                              ----------->GT1     <---------ARR11(3)         --------->WOX13(1)----------->RAV1(1)                      ----------->GT1     --------->CCA1(1)       ------------>CBF--------->ANAC58                            <---------TOE1(3)    <-----------GT1 ------->GT1           --------->ANAC55(1)                       ---------->DOF2  --------->LBD16 --->GLK1(2)      <---------------AtSPL3               <------------CBF          --------->HSFB2a(2) --->ARR14(2)   --------->YAB1                     ------->GAMYB--------->CCA1(2)<---------HSFB2a(2) ---GLK1(2)<---------ATHB12------>NtERF2          --------->ANAC46 <---------TOE2(3)    --------->RVE1(1)   cggaaatttgtcaatcgataatagcacggcaccaaaatggtctctagtctcaacgcagattgagagataaaggttaaaatgctccagaaaataccttctt  3418500                                                                                                 ----                                                                                                <----                                        --------->YAB1                                --------->YAB1                               ---------->DOF2                                     <---------CCA1(2)   <---------ZAT14       <---------ANAC58                   <---------ZAT18  <---------ARR11(3) -----   --------->ZAT14       <---------ANAC58          <----------DOF2      <-----------GT1    --------->At4g35610   cagagttcagtcttaacccagtttttttcttggtaaagagaataatacacactctttttttgttcacttaaaatttacaaatcttatatcatcagattac  3418600                                                              <---------ARR11(3)                                                              <-----------ARR10       ---------->DOF2       <---------YAB1                   --------->ARR11(3) ----->ICU4           --------->ANAC46                       --------->RVE1(1) -----ANAC55(2) <----------DOF2                  <------ZmHOX2a(1)  ------------>CBF --------->GLK1(2) ---->ANAC55(2) <---------DAG2    <---------AHL20(2)         --------->CCA1(1)   >>>>>>>>>TBF1   ttattaacaaaaagattactttatacgaagtatgatataatttctagtcgaggacgattcaaaatatctcatcaatttgagaagaagaatttgatataga  3418700                                   <---------------AGL15                                   ==================================================================                                   <----------DOF2                                   --------------->AGL15                               --------->ARR11(3)                                             <<<<<<<                               <---------GLK1(2)                                          <---------TOE2(3)                               <---------ARR11(3)                                       --------->AHL20(2)                              --------->YAB1                           <----------DOF2  <---------AHL20(2)                           ---------->DOF2                     --------->AtMYB61    <---------AHL20(2)         --------->At4g35610 ----------->ARR10                --------->MYB46(3)    --------->AHL20(2)   aactagaaatgagcttaaaatttggatagcaaagatacttttagtggctaacacatccaagagaaccacaactctttctatgcatattaattaatgttac  3418800             --------->YAB1            <---------AHL20(2)   --------->AHL20(2)           --------->AHL20(2)  <----------DOF2        --------->AHL20(2)     <---------------AGL15                                             ----       --------->AHL20(1)     =======================================================================       <---------AHL20(1)     <-----------------AGL3                                             <---      --------->AHL20(2) --------->ICU4                                    --------->AHL20(2)    ---- ==============================================MADS_MADS          <--------P               <<<<<<<<<TBF1 <<<<<<<<<<LFY           <---------YAB1                       <-----------RAV1(2)   <---------YAB1   attggcaaatatatataataacgagtgatgatgctttaaatggcctctctcaacatatgtttcttcaggtaagacaatttcatatgatgcttcttcttca  3418900  Previous    Next  AGI:  At5g10800.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G25060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79213.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44360.1); similar to putative U2-associated SR140 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28014.1); contains InterPro domain SWAP/Surp; (InterPro:IPR000061); contains InterPro domain ENTH/VHS (InterPro:IPR008942); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (Inter Range:  from: 3412655    to: 3418383    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g10810.1    Description:  ATER (Arabidopsis thaliana enhancer of rudimentary homologue). Identical to Enhancer of rudimentary homolog [Arabidopsis Thaliana] (GB:Q96319;GB:Q9LEV8); similar to unknown [Picea sitchensis] (GB:ABK23389.1); contains InterPro domain Enhancer of rudimentary (InterPro:IPR000781) Range:  from: 3418667    to: 3420636    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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