Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->ANAC58                                       --------->ANAC58             <----------DOF2  ---------->DOF2            --------->At4g35610      --------->MYB52(1)       --------->At4g35610---------->DOF2            --------->CCA1(2)   ---------->DOF2         ---------->DOF2        --------->HSFB2a(2) --------->CCA1(2)         ----------->GT1---------->DOF2     ----------->GT1  <---------HSFB2a(2)   tagataagagagagagatgaacaaaaaactagttaaaagaaacgaaaagagagagagagaaaggaggtgactttaatggttccaaaagaaagggtctgat  3367700                                                     --------->ZAT2                                                     <---------At4g35610                --------->TOE2(3)           --------->LBD16            <----------DOF2                --------->ANAC46           <---------HSFB2a(1)  -------->P<---------LBD16           --------->HSFB2a(1) ------->GAMYB------>NtERF2--------->REM1(1)      ----------->RAV1(1)       --------->ANAC58       --------->MYB46(3)<---------ARR14(2)    --------->ANAC58<---------ARR11(3)       --------->ANAC46       <---------MYB111(2)    --------->At4g35610       --------->MYB46(3)  --       --------->ANAC58       <---------MYB55(2)--------->GLK1(2)     --------->ANAC58--------->GLK1(2)      <---------LBD16 --------->YAB1<----------DOF2  <---------ZAT2 ---------->DOF2   <-----------ARR10   tcgaattacacggactttccataaacataacaacaacccttttctccgcgattccagcttcaccatgaaacaaagccatcaacaacaaaatctaaacaga  3367800                                                --------->CCA1(2)                                             --------->ANAC58            --------->MYB52(1)                                             --------->ANAC46         --------->TOE1(3)            <---------TOE2(3)                --------->ANAC58 <---------ARR14(2)           ---------->DOF2                <------ZmHOX2a(2)   --------->ARR14(2)          --------->AHL20(2)              <---------ATHB12   <------ZmHOX2a(1)               --------          <---------AHL20(2)              ==========================HOX2a_HOX2a              -------- ------->CCA1(2)                    <-----------GT1     --------->MYB52(1)  ----------->GT1  <-------   gagatgagacaattaaagaaactttgcccttcaaaatttttccgatcaagctacaagttaacaggattcgaaccctaactgtgaaattgaagaaaaatct  3367900                                                           --------->ARR11(3)                                                           <---------ARR11(3)                                                           <---------AHL20(1)                                                           --------->AHL20(1)                                                          --------->AHL20(2)                                                  <-------TEIL                          <------ZmHOX2a(2)                   --------------->AGL15         --------->CCA1(2)                     <---------ARR11(3)                   <---------------AGL15        --------->ARR14(2)                     --------->ARR11(3)     ----------->GT1         ------------------------>ANAC81                  <----------DOF2 ->ARR11(3)       ----------------->AGL3        <---------ARR14(2)         <-----------GT1 <---------YAB1 ->GLK1(2)        ----------------->AGL2       --------->At4g35610 <----------DOF2<---------HSFB2a(2) --ARR11(3)    --------->WOX13(1)          --------->GLK1(2)       <---------DAG2 --------->HSFB2a(2)   tccaaagttgaaaatttcaatccaaatacagaaacaacaagagagaatcagatacaacaaatatatcaacttttttttttctttctcgagatcattttag  3368000                                                                                               ------                                                                                              -------             <---------At4g35610                                                              <------             <---------ZAT2                               <----------DOF2                     -------             --------->ZAT2                              --------->TOE2(3)                    -------             --------->At4g35610                     <---------MYB52(1)                      <------NtERF2          --------->At4g35610                        --------->DOF5.7(2)                     --------          ----------->RAV1(2)                       <----------DOF2                          --------          <---------At4g35610                    ------>NtERF2                               --------          --------->ZAT2                         --------->LBD16                             --------          <---------ZAT2                        <---------RAP2.6(2)          ------>NtERF2  <--------        <-----------RAV1(2)                     <---------LBD16        <----------DOF2      <--------      <-----------HVH21        ----------->GT1 <---------LBD16     <-----------GT1          ------>NtERF2     --------->bZIP60(2) --------->ALFIN1   <----------DOF2     <---------AHL20(2)         --------->ANAC46   agaaaccatgtcagctgctgcgagagagaggggaagaaaaaaaaaactttccggcgttacctttatttttttcctttgccgagagattactctgcgccgt  3368100 >NtERF2                                                 <---------AHL20(2) -->DEAR3(1)                                             <-----------TBP ---ANAC46                                               --------->AHL20(2) -->RAP2.3(3)                                          --------->AHL20(2) -->RAP2.3(2)                                          <---------AHL20(2)      <-----------RAV1(1) ->ATERF1(1)                                           <-----------TBP     <---------AHL20(1) ->ORA47(2)                 *TSS                     <-----------TBP       --------->AHL20(1) ->DEAR4(2)           <---------ANAC46             --------->CCA1(2)       --------->ARR11(3) ->RAP2.3(1)       --------->ALFIN1               <---------ARR11(3)  --------->AHL20(2) -ATERF1(1)       <-------MYC3                    --------->ARR11(3) --------->AHL20(2) ----------->GT1 -RAP2.3(1)       ------->MYC3           <------ZmHOX2a(1) <---------AHL20(2)<------------CBF   -----   ctgtgagaattaacaaaaaacgtggagcgaagtagaagagagaggagaagaagatatatatatatatgaaaataaaaaatattgtgggagaagaaaaaaa  3368200                                                                                      <---------ZAT2                                                                                      <---------At4g35610                                                                                      --------->At4g35610              <---------ARR14(2)                                                     ------>NtERF2              --------->ICU4                                   <-------TEIL         <---------RAP2.3(2)              --------->ARR14(2)                               <---------ZAT14      <---------RAP2.6(2)           <---------------AGL15                            <---------ANAC58        <---------RAP2.3(3)          ----------------->AGL2                            <------MYB46(1)        --------->RAP2.6(3)        <------NtERF2                                       <------MYB83          --------->MYB52(1)      <---------ANAC58                    <------ZmHOX2a(1) <---------ANAC58    <---------WOX13(1)  -      <---------bZIP60(2)   <-----------HVH21              <------MYB83 --------->At4g35610     -----      <---------REM1(1)    <---------MYB46(3) <-------GAMYB<---------MYB46(3) --------->ATHB12  <----      <---------ANAC58  ------------>MYB.PH3(1)<---------MYB52(1)<---------ANAC46----------->HVH21  -      <---------ANAC46 --------->DAG2 <------ZmHOX2a(2)    <------MYB46(1) ==========================   --------->ALFIN1   ---------->DOF2--------->ARR11(3)    --------->MYB59 ---------->DOF2      ----- ----->DOF2--------------->AGL15    <---------GLK1(1)    <--------P     <---------At4g35610 <--------   aagaagtggcgtagcaaatatggaaaaagcggttagagagatcaggaccgttgattcgggttgggttcagtggaagctaaagattgacggctgagatgta  3368300                                                                        <---------ANAC46       <---------SPL7                                                   --------->ANAC55(2)   <---------bZIP60(2)                                                  <---------ANAC55(2)   <---------TGA2(1)                                                 <---------MYB52(1)   --------->TGA2(1)                                                <----------DOF2   <---------TGA1a                                                  <-----------HVH21   --------->TGA1a                                                <------NtERF2   --------->O2                                             --------->DOF5.7(2)   --------->bZIP60(1)                                      <---------MYB52(1)              <--------   <---------bZIP60(1)                                --------->WRKY12  <---------ANAC58    ---------   <---------O2                                       --------->WRKY38(1)                  <---------YAB1  ----------->STF1                                   <---------MYB52(1) <---------ANAC58 --------->YAB1 <---------TGA2(2)                               ------>NtERF2 --------->At4g35610      ----------->GT1 ---------->TGA1                                <---------ALFIN1<---------RAP2.6(2)--------->ANAC58 ---->ZAT18                                  --------->ANAC46  <---------At4g35610 --------->ANAC58 -----ZAT14                                  --------->ANAC58 --------->MYB52(2)--------->ETT(2) ---------->HVH21                            --------->ANAC58 <---------DOF5.7(2)  --------->ANAC46 ============bZIP_DOF                    <---------AHL20(2)<-----------HVH21 <---------ANAC46 ---->ZAT14------>ZmHOX2a(1)     <------ZmHOX2a(1)  <-------GAMYB<---------RAP2.3(1)    --------->ICU4 -------AtSPL8  <---------MYB46(3)      --------->AHL20(2) <-------GAMYB<---------ANAC55(1)--------->ICU4   cactgacgtcgtcctcagtggatggaagagtattaggaagaattaaaacgacaccgttgtccgttagcggcgttacgtattgtggacggaatgataattg  3368400                                                                     <-----------------AGL3                                                                --------->AHL20(2)                                                                <---------AHL20(2)                                                              --------->AHL20(2)                                                              <---------AHL20(2)                                                            <---------AHL20(2)                                                            --------->AHL20(2)                                                          --------->AHL20(2)                                                          <---------AHL20(2)                                                        --------->AHL20(2)                                                      <---------AHL20(2)                  <---------AHL20(1)                                                      --------->AHL20(2)<---------AHL20(2)--------->AHL20(2)                                                    --------->AHL20(2)--------->AHL20(2)  --------->AHL20(1)                                                    <---------AHL20(2)<---------AHL20(2)  <---------AHL20(2)                               <---------AHL20(2) <---------AHL20(2)--------->AHL20(2)   --------->AHL20(2)                               <---------YAB1     --------->AHL20(2)<---------AHL20(2)   --------->YAB1                              --------->TOE2(3) --------->AHL20(2)--------->AHL20(2) <---------YAB1 -ICU4                ----------->GT1           <---------AHL20(2)<---------AHL20(2)<---------TOE2(3) >ATHB12        <---------AHL20(2)       ----------->GT1<---------AHL20(2)       <---------WOX13(1) -   agtaattgaattttgtattttttttggtgaaatattaatggatgagttatatatatatatatatatatatatatatatatgggattgacgattatattat  3368500                                                                            --------->ARR11(3)                                                                       --------->ATHB51                                                                       --------->ATHB12                                                                       -------->ATHB1             ---                                                                      <---------AHL20(2)        -----                                                                      <---------ATHB51         ------                                                                      --------->AHL20(2)     --------                                                     <---------TOE2(3)--------->ICU4      <---------HSFB2a(2)             ----------->GT1 <---------AHL20(2) <------ZmHOX2a(1) --------->YAB1          --------->HSFB2a(2) -------->At5g28300       ----------->GT1   ---------->DOF2    --------->WOX13(1)        <---------ETT(2)   actgtaactggtggaaagtgtaatggattagttaattttgtagataaaaaggatttagattagattaatcaaattattgatattgacaatgtcgagaaag  3368600  Previous    Next  AGI:  At5g10650.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G24870.2); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G24870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43928.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 3364973    to: 3368128    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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