Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 --------->ATERF1(1)                                                                               --------->At4g35610                                                                               <------NtERF2                                                                               <---------At4g35610                  ----------->RAV1(1)                                         <---------RAP2.3(1)                 <----------ID1                                               <---------ERF1               ------------------------>ANAC81                                ------>NtERF2             --------->GLK1(1)                                               <---------DEAR3(1)            --------->ARR14(2)                        <---------O2           <---------ATERF1(2)          --------->LBD16                             <---------TGA1a        --------->ATERF1(2)         --------->LBD16                              --------->O2        <---------DEAR3(1)        --------->ANAC46                          <-----------HVH21     --------->MYB52(1)  ---------        --------->LBD16                   --------->ANAC58           --------->HSFB2a(2)    <--------        <---------LBD16                   --------->ANAC46      ------->TEIL <---------RAP2.3(2)       <---------LBD16                    --------->ANAC58 --------->CCA1(2) <---------RAP2.6(2)    <-----------GT1                 --------->AHL20(2)--------->TGA1a<---------HSFB2a(2)    ---------   ctctaattacccgggaaatgcaacaaaacaagaagaaataaaacacgaattgtgtcacgagagacggacctcgagaacggcggcagtctgagcaagctgg  3299800               <------NtERF2              <-----------HVH21              <-----------TGA1             <---------ANAC46             <---------TGA2(1)             <---------ANAC58             <---------ANAC58 <---------HSFC1(2)         --------->YAB1            <---------DOF5.7(2) --------->HSFC1(2)        <---------YAB1           --------->DOF5.7(2) >At4g35610  --------->bZIP60(1)                    <---------MYB52(1) -ZAT2       <---------bZIP60(1)      --------->ARR14(2)               --------->TOE1(3)           xx >ZAT2       --------->TGA2(1)       <---------MYB52(1)               ----------->RAV1(2)   <--------   agaggcttctcaatggcgtcatagacattctcataacccgtttccttcaacgtcgttatcgctaagtacaaaacctgagccctaataccccaaatgtcac  3299900                                                                                            ---------                    ----------->GT1                                                        <------ZmHOX2a(2)                 --------->LBD16                                <---------ZAT2            --------->ARR14(2) xxxxxxxxxxxxxx>smallRNA(i)--------->AHL20(2)---------->DOF2    --------->ZAT2            <---------ARR14(2) ---HVH21   --------->WOX13(1)     --------->ZAT18  ---------->DOF2                ---------->DOF2   caaaattcaaaaatcaatccgagagaaaaataaaaactccactagacaaaagaagaaagagagtcgagctcgacttgccatccagcaaagacgatccaat  3300000                        <---------WRKY12                     --------->LBD16                     <---------SPL7                     ----------->HVH21                    <---------ANAC46                    --------->DEAR3(1)                   <---------LBD16                   <------NtERF2                   --------->ATERF1(1)                  ------>NtERF2                 --------->ANAC46                <-------MYC2                ------->MYC2                ------->MYC3             ------>NtERF2    --------->ANAC46                <-------MYC3------->GAMYB<------NtERF2    --------->ANAC55(2)               --------->ANAC46         --------->ANAC58  --------->ANAC58               --------->ANAC58         --------->ANAC58  --------->ANAC58             <---------ALFIN1           --------->ANAC46  <---------ANAC55(2)            <-------TEIL<---------WRKY38(1)            --------->ARR14(2)         <---------ANAC46--------->MYB52(1)     ---------->DOF2                                ------        <-----------------------TaNAC69(2)   --------->AtLEC2                               >>>>>>>>>TBF1        --------->MYB59--------->SPL7  --------->ZAT18 <---------ARR14(2)             --------->HSFB2a(2) -------->AGL3 --------->ANAC58   ---------->DOF2 ----------->GT1                     <---------HSFB2a(2)   tgtagagagtgaggtacacgcgccggacaacggagagaaagcccgccatggaaagtgaatacgcgagaacgactaattctttgaacacccagaagaagaa  3300100                     <------ZmHOX2a(2)                     =============HOX2a_HOX2a               <------NtERF2              --------->LBD16             <---------ANAC46                                             --------->REM1(1)            <---------------------WRI1--------->ICU4                  <---------At4g35610            <---------LBD16     <------ZmHOX2a(1)                    --------->ANAC58       <---------AHL20(2)  <------ZmHOX2a(1)         <---------YAB1  --------->ANAC58    <---------ARR11(3)=================HOX2a_HOX2a  *TSS           <--------P    --------->ARR11(3)------>ZmHOX2a(2)  <---------YAB1          --------->ANAC58          <---------At4g35610  ----------->ARR10  ==================HOX2a_HOX2a <---------ICU4--------->ANAC58  ------->GAMYB ---->DOF2<-----------RAV1(1) --------->ALFIN1<-----------GT1  <-----------RAV1(2)--------->MYB46(3)-   agagtagattttatggcggagagatcggaggagaggagcatttatgaattacatcatgactagagacaggtaagctacttctcaaccgtcttcttctgat  3300200                                     <-----------GT1                                    ---------->DOF2                                   <---------ATHB12                               ------------>CBF                               <---------YAB1                                      --------->LBD16                            --------->MYB46(3)                           --------->ANAC46                          ------>MYB83              <---------AHL20(2) --------->MYB46(3)        ----                        --------->MYB46(3)         --------->AHL20(2) -------->P  --------->HSFB2a(2)                        <---------MYB55(2)------>MYB83          --------->ICU4    <---------HSFB2a(2)       <---------AHL20(2) ------>MYB46(1) ------>MYB46(1)  --------->ANAC58       --------->HSFC1(1)   --------->ATHB12    --------->ANAC58 --------->AtMYB61  --------->ANAC46 <---------ALFIN1    -----  <---------YAB1       --------->ANAC58 <---------ALFIN1   --------->ANAC58<---------ALFIN1    ------ -------->YAB1         --------->ANAC46--------->MYB46(3)<-----------GT1------->GAMYB<---------GLK1(2)   atttatgatttaaacccatactttcacccaactatcaataaaccacccctatatttaatatacgacattatcaacccccaacttccagaattttgggagg  3300300                                                                                   <-------GAMYB                                                                            --------->ANAC46                                                                            --------->ANAC58                                                                            --------->O2         <---------AHL20(2)                                                 --------->ANAC58        <---------AHL20(1)                                                  --------->TGA1a         <        <---------AHL20(2)                                                  ===============MYC_MYB  -        --------->AHL20(2)                <---------YAB1                  --------->MYB52(1)---------     --------->WOX13(1)              ----------->GT1       --------->ATHB12<---------LBD16  --------- ----->At5g28300               ---------->DOF2--------->AHL20(2)         ----------->HVH21  <-------- ------>GT1                 --------->TOE2(3) <---------AHL20(2)       <---------At4g35610  --------- ----->GT1        --------->YAB1     <---------ZAT6  <---------MYB59   --------->At4g35610 ------->TEIL   gtaaattcaattaatttcaatcgtatattacatcaaagagtgttataaaaaaatagctaactcattgaatttcatctcacggctcggttgaagcacctga  3300400                                                                          <---------MYB52(1)                                                                         <-----------HVH21                                                                        <---------O2                                                                        --------->TGA1a                                                                        --------->O2                                                                        <---------TGA1a                                                                   <---------ZAT2                                                                   --------->At4g35610                                                                   <---------At4g35610                                                                   --------->ZAT2                                                             ------>ZmHOX2a(2)         <---------WOX13(1)                                 <---------GLK1(1)       --------->ATHB12                   <---------ATHB12  <---------At4g35610  <---------ANAC58                     --------->AtMYB61    --------->GLK1(1)  <---------ANAC58                    --------->MYB46(3)    --------->At4g35610  <-------GAMYB                      ------>NtERF2          <------ZmHOX2a(2) <------MYB83                        <<<<<<<<<<<<<<<<<LFY  <---------AGP1--------->LBD16 <------MYB46(1)                     >>>>>>>>>>>>>>>>>LFY  <---------ARR11(3) <---------MYB46(3)                 --------->RAP2.6(2)    <---------ARR14(2) ---------AtMYB61                  --------->MYB46(3)      --------->ARR14(2) -------->MYB59                   --------->At4g35610      <-----------ARR10     <----------DOF2 >ZAT2<---------YAB1        ------>ZmHOX2a(1)             <---------CCA1(2)   <---------ARR11(3) >At4g35610                <---------ANAC58               <---------ARR14(1)  --------->ARR11(3) -At4g35610                <---------ANAC58              --------->LBD16<---------ANAC46 -->RAV1(2)       <----------DOF2--------->ANAC46      <---------LBD16  ====================bZIP_DOF   gtttggttgtgattggctatctttctgttccttatcagccaccaatggtccatttccaccggatctgcgagctcccgtgagttctttagcatctgtttcc  3300500                                                            --------->ANAC46               --------->HSFB2a(2)                                                           ------->GAMYB                   <---------HSFB2a(2)                                                          <---------ALFIN1                ------>ZmHOX2a(2)            ------->TEIL                                ----------->RAV1(1)       <---------TOE2(3)           <---------CCA1(2)     --------->ZAT14      <---------ZAT18            ---------->DOF2   <-    <------ZmHOX2a(1)  --------->ATHB12<----------DOF2--------->ZAT18  <---------GLK1(2)--------->ARR11(3)   atgggaggagaatgtatctcttcttcgattggaagtgttctctttgagccttctagtgcaacacccagtactatattctcttctaaagttgatctagacg  3300600                                                                                              -------                                                   <---------ALFIN1                           <------                                       <---------AHL20(2)                                     -------                                       --------->AHL20(2)         <---------MYB52(1)         <-------                             <----------DOF2       --------->AtMYB61          <---------ARR14(2)  <--                       --------->At4g35610        --------->MYB46(3)          --------->ARR14(2)  --- --------At4g35610     <---------At4g35610       ------>NtERF2   <----------DOF2  ------>ZmHOX2a(1)   ctgatgatgttgaactatctgtttcatctgtctttgttgattttattgtgccaccacttctcttggcctttggtttctcagttcctgatgtttctgtatc  3300700  Previous    Next  AGI:  At5g10480.1    Description:  PAS2 (PASTICCINO 2). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59770.1); similar to unknown [Populus trichocarpa] (GB:ABK92807.1); contains InterPro domain Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482) Range:  from: 3297805    to: 3300152    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g10490.1    Description:  MSL2 (MSCS-LIKE 2). similar to MSL3 (MSCS-LIKE 3) [Arabidopsis thaliana] (TAIR:AT1G58200.2); similar to MSL3 (MSCS-LIKE 3) [Arabidopsis thaliana] (TAIR:AT1G58200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61607.1); similar to 117M18_28 [Brassica rapa] (GB:AAZ66947.1); similar to expressed protein [Prunus persica] (GB:ABJ96380.1); contains InterPro domain Mechanosensitive ion channel MscS; (InterPro:IPR006685); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 3300226    to: 3304762    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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