Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <---------ICU4                                                                          --------->YAB1                                                                       <---------ICU4                                                                       --------->YAB1                                                                    --------->YAB1                                <<<<<<<<<<<<<<<<<LFY             ----------->GT1                             --------->ARR14(2)              --------->ANAC58                     ---                     <---------ANAC58                        --------->ANAC58 ---------->DOF2   -----     <------ZmHOX2a(2)       <---------ARR14(2)         ------>ZmHOX2a(1)--------->ICU4       ------- ----->ANAC58        <---------ANAC58               <---------ARR14(2)--------->ICU4       ---------- ----->ANAC58   --------->ATHB12--------->ANAC46    --------->ARR14(2)<---------YAB1 --------->ANAC46   agaaacgatccaagtagttcattgctagacatatacacaatggtccaaattgaagttcctcacaggcctgtaataataatcaaagacacaaaacaaagat  3282000                                       --------->ATHB12            ------->GAMYB   ---------->DOF2                    <---------YAB1             --------->At4g35610 ------>DAG2              ---------->DOF2    <---------ANAC58   ----------->RAV1(1) ---->CCA1(2)     <-----------GT1    <---------GLK1(2)         <---------WRKY38(1)                 <- -->YAB1      <----------DOF2    <---------At4g35610  --------->ICU4        ---------->DOF2      <--- >DOF2        --------------------->WRI1     <---------ANAC58  <---------WRKY12                  <---   aaggcaaaagtcatgtcttttttcatatcaaagtcatcagattattgacttgggtaagaattgagtcaacagaagaaacaaagaagaaatttttgtctga  3282100                          <---------ANAC58                          <---------ANAC58                     --------->MYB52(1)                   <---------MYB55(2)                   --------->MYB46(3)                   <---------ATHB12                  -------->P                              <---------MYB52(1)                <--------             <---------ARR14(2)                    <---------ARR14(2)             --------->At4g35610        ------>MYB46(1)   <---------ANAC46         --------->ARR14(2)           --------->YAB1        ------>MYB83------->GAMYB           --------->GLK1(1)                   <---------ICU4 ----------GT1    ------>MYB83 <---------ARR14(2)  <-----------ARR10           <---------ATHB12 -------DOF2 --------->ARR14(2)<---------GLK1(2)  <---------CCA1(2)            --------->ICU4 ------WOX13(1)   ------>MYB46(1)           <---------GLK1(1)            <---------TOE2(3)  <--------   tttactgaccttccaaatccaaccaagggcttggattctgacattgaaatccaaatctccgtttctcagtctcttgaggtaatcatctctcggtgagtgt  3282200                           --------->ARR11(3)                           <---------ARR11(3)          --------->At4g35610                          ------->GAMYB                <---------At4g35610        <---------GLK1(2)                --------->At4g35610       --------->LBD16                   --------->ETT(2)              <---------ICU4<------ZmHOX2a(2) ==============================HOX2a_HOX2a              --------->YAB1=========================HOX2a_HOX2a            <---------ETT(2)        -     <----------DOF2    <---------TOE2(3)<---------HSFB2a(2)         ------>ZmHOX2a(2)           ---- -ANAC58     <---------ATHB12------>ZmHOX2a(2)<------ZmHOX2a(1)    --------->ARR11(3)            <--- -ANAC58   --------->WOX13(1)========================HOX2a_HOX2a   <---------ARR11(3)         -------   tgtctctctttctcaatcatctctctaacgatctcttcgctctccagaggaaaacccatctgaaaaatcgatcttgtgtcgacagaattgctcttctcat  3282300                         <---------HSFB2a(2)                         --------->HSFB2a(2)                    <------MYB83                    <------MYB46(1)                 --------->ARR14(1)                 --------->CCA1(2)                                                                ---                --------->ARR11(3)                                                                <--  <---------YAB1--------->ARR14(2)                                 <----------DOF2               <--- -------->YAB1  --------->ARR11(1)                             <----------DOF2            <---------- ----->YAB1     <---------ARR11(3)             <----------ID1 <---------ANAC58           <---------ZAT6 ------ICU4     <---------ARR14(2)     <---------YAB1    <---------REM1(1)             <---------At5g28300 -->YAB1  --------->CCA1(2) --------->AHL20(2) ----------->GT1<---------ANAC58        <-----------GT1   catcaaaattggatacaagatttggttccataaattcagccattatagagcgtcaaaaattgtagctttctttcgatctatacaaattttactgttacag  3282400                                                        <------MYB46(1)                                                        <------MYB83                                                     --------->ARR14(1)                                                     --------->CCA1(2)                           <---                                                    --------->ARR14(2)                        <------                                                    --------->ARR11(3)                 <---------YAB1                                                    <---------ARR14(2)              --------->AHL20(2)      <------ZmHOX2a(1)                             --------->ARR11(1)              <---------AHL20(2)     ----------->GT1                            ---------->DOF2                     --------->AHL20(1) ------>ARR14(2)                          ------->GAMYB--------->MYB59              <---------AHL20(1) -------ARR14(2)     <---------YAB1     <---------At4g35610                        --------->AHL20(2) ---ZmHOX2a(1)      <-----------TBP     --------->At4g35610                        <---------AHL20(2) -HVH21     *TSS----------->GT1      <-------TEIL ----------->ARR10       <----------DOF2  <---------   gatttggaggaaaaaatatggtttttatagtataagagattcaactgaagaaaagatttggtctctgtttttatgtcttttctaattttatttttgctct  3282500                                                         <---------YAB1           <----------DOF2                            --------->AHL20(2) ---------CBF                                       <----------DOF2 ----DOF2 <---------ANAC58     ---------->DOF2    <---------At4g35610                   <---------YAB1 --GT1    <---------ANAC58 ---------->DOF2 --------->CCA1(2) ----------->GT1       ----------->GT1  -   attgtagaatttgctttgggtcaaaaccaaaaagaaagaagagagagatgggagcttttaatattgtaatttgtaagagaagaaaatgttatttttggta  3282600                                                                                      ===============                                                                                      <--------------                                                                                      ---------------                                                                                     --------->YAB1                                                                                <---------YAB1                                                                               <---------AHL20(2)                                                                            --------->AHL20(1)                                                                       --------->AHL20(2)                                     ---------->DOF2                   <---------AHL20(2) --------->CCA1(2)                                  --------->AHL20(2)          <---------YAB1<---------ARR11(3)              <------ZmHOX2a(1)----------->GT1              --------->YAB1  <---------AHL20(1)   --------->AHL20(2)       ---------->DOF2               --------->AHL20(2)--------->ARR11(3) ---------->GT1      <------ZmHOX2a(1)    --------->CCA1(2)<---------YAB1  <---------AHL20(2)   agagataaaatgtgaaggagagaggataacaaaagattaaaaagataagaaaattagcatttttataatggaaataaatatttttattcaaaatatggga  3282700                                              --------->ATHB12                                             <---------YAB1                                            <----------DOF2                                      <--------P                                    <---------MYB46(3)                 <---------AHL20(2) --------->ATHB12           <------ZmHOX2a(1)       <---------ATHB12                                            <-----     --------->YAB1             <---------WRKY12                 --------->CCA1(2)      <-----------GT1    <---------AHL20(2)          <---------WRKY38(1)             --------->ARR11(3)   --------->ARR11(3)   --------->AHL20(2)          --------->WRKY18(1)            <---------TOE2(3)      <---------GLK1(2) =========================================================MADS_MADS        <-----------GT1  <-------- -AGL15   ----------->GT1---------->DOF2  --------------->AGL15 <---------ARR11(3) ----------->ARR10< >AGL15  <---------TOE2(3)    <-----------HVH21       <-------TEIL    ----------->GT1<---------ARR11(3)   aactatataataaggaaaatttatgtgaaaagggtcaatggttgctctttattggatacattttaagatatatggtataacaacttagattttcgttatt  3282800                                                                                          --------->ARR14(2)               <---------ANAC58                                                           <---------ARR14(2)               <---------ANAC46                       --------->TOE2(3)                   ------->TEIL    ----------->GT1                                 <---------ARR11(3)              --------->ARR14(2)   <---------WOX13(1)                               --------->ARR11(3)              <---------ARR14(2) <<<<<<<<<RAP2.2                                   --------->CCA1(1)          <---------AHL20(2) ----YAB1<---------ARR14(2)                        --------->RVE1(1)         --------->AHL20(1) -MYB52(1)     <---------ANAC58        --------->ATHB12                      --------->AHL20(2) ---------TOE2(3)                     <---------YAB1--------->GLK1(2)        <---------AHL20(2)     <   tttagattgaaaatatggcgagtcattcgttttctaagttttgatttgagaaaaaatcttagatttatacttcaacaaatttaatggatatgtatatgca  3282900  Previous    Next  AGI:  At5g10440.1    Description:  CYCD4;2 (CYCLIN D4;2); cyclin-dependent protein kinase. Identical to Cyclin-D4-2 (CYCD4-2) [Arabidopsis Thaliana] (GB:Q0WQN9;GB:Q6NKU1;GB:Q9LX96); similar to CYCD4,1 (CYCLIN D4,1), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT5G65420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65093.1); contains InterPro domain Cyclin D (InterPro:IPR015451); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (InterPro:IPR011028); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367) Range:  from: 3280517    to: 3282412    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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