Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                     --------->ANAC58               <------ZmHOX2a(1)                         -------                     --------->ANAC46       <---------------AGL15                            --------                     --------->ANAC58      <-----------------AGL1                            <-------             <---------O2      ------->TEIL----------------->AGL1                            <-------             --------->O2     <---------ARR14(2)  <---------TOE2(3)                      <-----------HVH21 -----MYB46(3)    --------->ZAT14          --------------->AGL15                        --------->ALFIN1 -------RAV1(1)   <---------ZAT14          <-----------------AGL2  <---------ARR14(2)--------->DAG2<-   gttggacctgcttagacgtcttcactcaagaagaaccttgttatgcccatttaaggacaattcatggtggaatcggattagtcgagtaaggtgtcccaga  3267200                                                                                                  <--                                                                                                  ---                                                                                                 <---      --------->WRKY12                                                                          <----      --------->WRKY38(1)                                                                      <-----     <---------MYB52(1)                                                                       -------    <-------GAMYB                                                                             ------- ----ZmHOX2a(1)                                                                         <---------ZAT14 -->LBD16                                                                               <---------ZAT18 ->HSFB2a(2)                       ------->TEIL                                         --------->ZAT14 ----RAV1(2)--------->ZAT2        <---------CCA1(2)        <---------YAB1          --------->ARR11(3) --HSFB2a(2)<---------ZAT2 ------->TEIL            --------->ARR11(3)              <---------ARR11(3) --------ARR14(2)        ----------->HVH21   ----------->GT1                     <---------YAB1<-----   ggaccccgttgcccagcccgactagaccggacctatgtatctatattctgtaacatctggtatgcttaatgtgtacatatgtgaagatagtgtagttcgg  3267300                                                                 >>>>>>>>>ARR1                                                         --------->AHL20(1)                                                         <---------AHL20(1)                                                         --------->AHL20(2)   <-----------GT1  ------->GAMYB                        <---------AHL20(2) -------MYB46(3)  ------>MYB46(1)                   --------------->AGL15 ------>MYB52(2)  --------->At4g35610         --------->LBD16    >>>>>>>>>ARR2                     -- ------MYB55(1)   ------>MYB83         --------->TOE2(3)<---------AHL20(2)                    ------- -----MYB52(1)   --------->MYB52(1)  --------->GLK1(2)  --------->AHL20(2)             --------->ANAC55(2) -MYB46(1)      ------->GAMYB   <------ZmHOX2a(2)  ----------------->AGL3              <---------ANAC55(2) -->MYB46(2)   --------->MYB46(3)--------->YAB1    ----------------->AGL1              <---------ANAC58 -->MYB59    <-----------GT1    <---------ATHB12--------->SPL7 <---------TOE2(3)       <---------ANAC58 -MYB83   <----------DOF2 --------->MYB52(1)<---------LBD16    <---------YAB1 ---------->DOF2 -------   tagttataccttctttaaccaactgaaaaaaccgatcataatctaaaccggatgccaaataaattaagattgttgtaaatgaaagacttacttgactcgc  3267400             --------->ANAC46      --------->ATHB12  <---------ZAT14                                                             <    <---------WOX13(1)--------->ETT(2)         ----------->GT1                          <---------ANAC58 ------->REM1(1)      <---------ETT(2)      ---------->DOF2       <-------TEIL          <---------ANAC58 -->ANAC58 <---------ANAC55(2)   --------->ZAT18            ------>ZmHOX2a(1)           <---------ANAC46 -->ANAC58 <---------ANAC46      <---------ZAT14           <---------MYB59      <----------DOF2  <---   tacatgactgattacgcgtaaatgtctacagagagtttactaagttgaaaggaaactacttcctaacatacagagacatcgcctttaatggcgttatcac  3267500                                                                                         ------->TEIL                ------>MYB83                                                           --------->REM1(2)                ------>MYB46(1)                                                        --------->ZAT14              --------->MYB46(3)                                                       <---------ZAT14              <---------MYB55(2)                                                       <---------ZAT18        <-----------GT1    --------->TOE2(3)                                  --------->ALFIN1      --------->HSFB2a(1)  --------->TOE1(3)                                  <-----------RAV1(1)      --------->HSFC1(2)------>MYB46(1)      ------>ZmHOX2a(1)              <---------ANAC58      <---------HSFC1(2)-------->P       --------->ARR14(2)                 <---------ANAC46      <---------HSFB2a(1) ----------------->AGL3                            --------->ALFIN1       <-   <------ZmHOX2a(1)    ------>MYB83     <---------ARR14(2)                 <---------ANAC58 ------>MYB83  --------->LBD16 <----------DOF2   <------ZmHOX2a(1)                     <---------bZIP60(2)------>MYB46(1) ---------LBD16<---------ALFIN1    <----------ID1                  <------------CBF  --------------->AtSPL8 -------DOF2 --------->ANAC46   ---------->DOF2         ------>ZmHOX2a(1) <---------ANAC46 --------->MYB46(3)   tttcaggaaatttccacccactttccaacccttaaaaaggacaaatcctctctaattcctagtcttgtagattgtgatgtgtgtggctgtgtacccactt  3267600                                                                                            ---------            <---------RVE1(1)                                                               ---------            <---------CCA1(1)                                                          --------->At4g35610           --------->ARR11(3)                                                        --------->YAB1           <---------GLK1(2)                                                      <----------DOF2           <---------ARR11(3)                       <-----------RAV1(1)    <----------DOF2--------->At4g35610         ----------->ARR10             --------->GLK1(2)         <---------ZAT18 <---------ANAC58   ------>ZmHOX2a(1)                *TSS            <---------ANAC46 ------>ZmHOX2a(1) <---------At4g35610 ----------GT1          <---------YAB1<---------GLK1(2)          --------->ZAT18 <---------ANAC58   atttcctcacgaagattttttgggtcatgactcttgtctagattctaacccattttgtgggttttagtgtcctatttctttttgctttcatcagaagcaa  3267700                                                                             <XXXXXXXXXXXXXXXXXXXXMIR415             <-----------HVH21                                              ------>ZmHOX2a(1)          <---------ANAC58                                           ---------->DOF2              <-- >ANAC58  <---------ANAC46   ----------->RAV1(2)                ---------->DOF2                   <-- >ANAC58  <---------ANAC58<-----------GT1                 <---------ANAC46--------->ZAT18      <-----   aaacttggaattgtgtgtcatacccattttcccctgttcttgttctgttttctactagttgtgtctgaaagtaaagtcctctgtttttgctctgtttatg  3267800                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                  <---------LBD16 ---            ------>ZmHOX2a(1)                                     --------->CCA1(2)              <---       --------->GLK1(1)                                         <---------ARR11(3)            <-----     --------->ZAT14                                  <---------ZAT14             <---------ETT(1)---     <---------ZAT14<---------ANAC58                <---------ETT(2)     <----------DOF2    --------- -------ANAC58      <---------ANAC58                --------->ETT(2)<-----------GT1------>NtERF2 ---- -------ANAC58      <---------ANAC46        <----------DOF2      --------->ARR11(3)--------->LBD16--- ------RAV1(1)      ----------->GT1       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------LBD16<----   tcgtctctgaactcctacaatggcgtttaatcacagaaaaatgcttctttcatgtctacagtttaaagatttacgcttttgtttccggcaataccctccc  3267900             --------->ANAC46             ------->GAMYB             --------->DEAR4(1)             --------->RAP2.6(2)             --------->DREB2C(2)             --------->ANAC58             --------->ANAC58          --------->DEAR3(1)          <---------ALFIN1          --------->AtMYB61         --------->MYB46(3)       <---------ALFIN1       --------->DEAR3(1)       --------->AtMYB61                                            --------->WOX13(1)      --------->MYB46(3)                                        <------NtERF2    --------->DEAR3(1)                                          <---------At4g35610    --------->AtMYB61     --------->At4g35610                   --------->At4g35610    <---------ALFIN1      <---------At4g35610                  ------>NtERF2   --------->MYB46(3)     <---------ZAT2                       <---------ATERF1(1)  <---------ATERF1(1)     --------->ZAT2                       <---------DEAR3(2)  ------>NtERF2           <---------GLK1(1)                   <---------DEAR3(1) <---------ALFIN1         --------->GLK1(1)                   <---------RAP2.3(3) --------->DEAR3(1)--------->DEAR3(1)                        <------NtERF2 ---->NtERF2 --------->DEAR3(1)                      ------>ZmHOX2a(2) --------ATERF1(1)<------NtERF2                    --------->ARR14(2) ------->LBD16--------->ABI4(1)                    <---------ARR14(2) <---------ATHB12 ------>ANAC58------>NtERF2                   <---------ZAT2 --------->ATERF1(1) ------>ANAC46<---------ATERF1(1)             --------->ZAT2<-----------HVH21 ------LBD16--------->MYB46(3)               ------>NtERF2 <---------DEAR3(1) ----ALFIN1--------->ABI4(1)                --------->ANAC46<---------SPL7 ------>DEAR3(1) ------>NtERF2              <---------ALFIN1<---------ATERF1(1)   --------------->AGL15 >ANAC46 <---------MYB55(2)              --------->ANAC46  --------->O2           <---------------AGL15 ----->MYB46(3) --------->DEAR3(1)     <---------ALFIN1    <---------O2          <-----------------AGL2 ------>ANAC58<-----------HVH21      ------>ZmHOX2a(1)   <-----------HVH21    <----------DOF2 -----ATERF1(1) <---------ALFIN1     =======================HOX2a_HOX2a--------->YAB1               -   ccgccaccaccaccaccgccaccgagggagctctctctcctactccccacctcgatctgcgtcgtcggctcaatcatactctttctatttctagtcttct  3268000                                              --------->ARR14(2)                                       <------NtERF2                                      <---------RAP2.6(3)                                      ------>NtERF2                                     --------->ANAC46                                     --------->ANAC58                                     ------->GAMYB                                     <---------ATERF1(2)                                     --------->RRTF1(2)                                     --------->RAP2.3(3)                                     --------->RAP2.3(2)                                     --------->ATERF1(2)                              --------->GLK1(1)                              <---------GLK1(1)                             <-----------ARR10<---------ARR14(2)                             --------->ARR14(2)     --------->LBD16                     --------->MYB52(1)--------->ATERF1(1)               --------->ANAC55(2)   --------->RAP2.6(2)               --------->ANAC55(1)  --------->MYB46(3)               --------->ANAC46     --------->ERF1 <---------LBD16 -------->P               <---------ANAC55(2)  --------->RAP2.3(1)            ------>MYB46(1)               --------->ANAC58    --------->At4g35610             ------>MYB83 <------ZmHOX2a(1)               --------->ANAC58    <---------At4g35610            ----------->RAV1(1)           <-----------HVH21<------NtERF2------>NtERF2<-----------HVH21        <----------ID1          --------->ANAC46<---------ANAC46<------NtERF2           --------->MYB52(1) --------->MYB52(1)          --------->bZIP60(2)<---------ARR14(2)   --------->MYB52(1)      <---------At4g35610        <---------ALFIN1 <---------LBD16--------->DEAR3(1)       --------->AtMYB61--------->ANAC58     --------->AtMYB61  ------->GAMYB--------->DEAR3(1)----------->HVH21  --------->At4g35610       <  <---------ALFIN1  --------->MYB46(3)<---------ATERF1(1)       --------->MYB46(3)--------->ANAC58  - ----->ZmHOX2a(1) ----------->RAV1(1)--------->ANAC58--------->LBD16   <------ZmHOX2a(1)    <------ZmHOX2a(1)   tcctctacctccacatcacgcaacaacggcggatttcagccgccagcgtaactcccggtgacacaaaccaacaggaagatgaggacgaaacagaggagag  3268100  Previous    Next  AGI:  At5g10370.1    Description:  helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related. similar to helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT4G01020.1); similar to hypothetical protein OsI_025976 [Oryza sativa (indica cultivar-group)] (GB:EAZ04744.1); similar to hypothetical protein OsJ_024178 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40695.1); similar to 117M18_19 [Brassica rapa] (GB:AAZ66938.1); contains InterPro domain Region of unknown function DUF1605 (InterPro:IPR011709); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPr Range:  from: 3261246    to: 3267345    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g10380.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL5F (ATL5F) [Arabidopsis Thaliana] (GB:Q9LX93); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G72220.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61677.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22352.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 3267636    to: 3268814    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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