Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------AHL20(2)                                        <---------AHL20(2)                                 --------->YAB1                                <---------ATHB12                        <---------YAB1 --------->AHL20(2)    <---------ANAC46                      ----------->GT1<---------ARR11(3)<---------TOE2(3)          <---------ANAC46    --------->WOX13(1)      ---------->DOF2        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->AHL20(2) <---------ZAT6 ---------AHL20(2)--------->ARR11(3) --------->ARR11(3)<---------TOE1(3)                      -------   atttaaaatgttatgtagaatatgttgttattcaatcaagattttataaaatttgttaaagttttgtgttattcattttagatttgttagaagtaatcta  3260800                                                                                            ---------                                                                                           <---------YAB1                                                                                          --------->AHL20(1)                                                                                          --------->AHL20(2)                                                                                          <---------AHL20(2)                                                                                         --------->YAB1                                                                                         <---------ICU4                                                                                        <---------YAB1                                                                                        --------->ICU4                                                                                --------->ARR11(3)  -                                       <---------AHL20(2)                       --------->GLK1(2)   <                                <----------DOF2                                 <---------ARR11(3)  -    --------->YAB1         --------->YAB1       ---------->DOF2                --------->CCA1(1)   <- <----------DOF2          <-------TEIL--------->AHL20(2) <---------ZAT6        --------->RVE1(1)   -- -->TOE2(3)       --------->ATHB12 --------->YAB1      <---------ANAC46      --------->AHL20(2)------   aaacttttataaatctggagttattggattcatacttttataaaatcagtaaaagttttgtgttattcaactaaaacaaaaaaatctctaattataatga  3260900           <---------AHL20(2)         <---------YAB1    --------->YAB1    -------->ATHB1    <---------ICU4                                                                         --------->ARR11(3)   --------->AHL20(2)                                                                      --------->AHL20(1)   <---------AHL20(2)                                                                   --------->AHL20(2)   <---------ATHB51                                                                 --------->YAB1   --------->ICU4                                                                 <---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            ----------->GT1 --------->AHL20(2) >YAB1<---------YAB1                                          --------->AHL20(1) --------->YAB1 -------->AHL20(1)         <-----------GT1                    <---------AHL20(2)<---------YAB1 ---------AHL20(2)      <---------ARR11(3)                    --------->AHL20(2)----------->TBP -------->AHL20(2)    <---------YAB1              <---------AHL20(2)          --------->YAB1 <------- --------AHL20(2)     --------->ICU4              --------->AHL20(2)    --------->DAG2 --------->YAB1 ------->AHL20(2)  <-------TEIL        --------->TOE2(3)  --------->AHL20(2) <---------YAB1<---------AHL20(1) --->AHL20(2)   <---------MYB46(3)   <-----------GT1   --------->YAB1  ---------->DOF2--------->AHL20(2)   attaaattattatgttattggttcatgattttctacatttttcttaacaaaataaaatcataaattttttgtaaaaagtattataaaaataaaaatattg  3261000                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                -----                                                                                               <-----                                                                                              <------                                                                                           <---------YAB1                                                                                         <---------AHL20(2)                                                                                         --------->AHL20(2)                                                                                        <---------AHL20(2)                                                --------->YAB1                       --------->AHL20(2)                                                --------->AHL20(2)                   <---------AHL20(2)                  <---------ARR11(3)         --------->YAB1                         --------->AHL20(2)                  --------->ARR11(3) <-----------GT1      <----------DOF2           <---------AHL20(2) -----CBF<-----------GT1----------->TBP    --------->AHL20(2)                      <---------WOX13(1)   tttgaaaaattttacaaaattatcttataaaaaactaattaacaaaataataaaaaaactctttagcgataatgtagaatttttgatttatttattttta  3261100                                      ------>ZmHOX2a(2)       --------->AHL20(2)         <---------YAB1       <---------AHL20(2)       <---------ICU4 ------->ATHB12                 --------->YAB1 --------ICU4               <---------AHL20(2) ------>ICU4            ------>ZmHOX2a(1) -------ATHB12          =====================HOX2a_HOX2a            <---------GLK1(2) -------YAB1            <XXXXXXXXXXXXXXXXXXXXMIR867               --------->LBD16 ------TOE2(3)         --------->TOE2(3)   -------->P       <---------At4g35610 ---->YAB1             <---------ANAC46   --------->AtMYB61 --------->At4g35610 ----AHL20(2)  --------->YAB1  --------->ICU4         <----------DOF2   <----------DOF2   <---------- ---YAB1      <---------YAB1--------->AHL20(2)--------->ANAC46------->GAMYB   <----------DOF2   atgatttgtttaaattatcaaaattccttataaattatgatcgactacccctaactcttttcaactcccagagtctttctctttcgctctctcattgtta  3261200                                                                                              <------                                                                                              <------                                                                                             --------                                                                                   ------>NtERF2                                                                                  --------->DEAR3(1)                                                                              <------ZmHOX2a(2)                                                                             --------->ARR11(3)                                                              =======================HOX2a_HOX2a                                                              ===================================HOX2a_HOX2a                                                              ========================HOX2a_HOX2a                                                              <-----------HVH21<---------DEAR3(1)                                                              ------>ZmHOX2a(1)------>ZmHOX2a(2)                                                     <----------DOF2         <---------ARR11(3)   <--                                                 <---------GLK1(1)           --------->ARR14(2)   ---                                               <------ZmHOX2a(1)       --------->ALFIN1   ------>ZmHOX2a(2)               --------->ANAC46          --------->YAB1    ==========================HOX2a_HOX2a  ---             --------->ANAC58            <---------ICU4    ===========================HOX2a_HOX2a <--             --------->ANAC46           <---------ATHB12   ------>ZmHOX2a(1) <---------ARR14(2)------ --CBF       --------->ANAC58 --------->bZIP60(1)--------->GLK1(1)  <---------DEAR3(1)    ===========   aacaaacacacacacacacaaaacaaaaactggcatcatcccatcatgaggaactcttttcctccttcagacggtggaagatcggcgactgatcgtcgtc  3261300                                                                    --------->AtMYB61                                                                    ------->GAMYB                                                                    <---------ALFIN1                                                                   --------->MYB46(3)                                                                   <---------MYB55(2)                                                             --------->At4g35610                                                             ------>NtERF2                            <---------MYB52(1)               <---------At4g35610 -----TGA1                ----------->GT1                 ------>NtERF2 --------->ORA47(1) -----HVH21             ------->TEIL                      --------->LBD16 ->ETT(2)            --------->ANAC58                     <---------ATERF1(1)               <-------- -------ZAT2         --------->ANAC58                    --------->DEAR3(1)            --------->ANAC46 ------>ZAT2         <---------MYB52(2)                  --------->ANAC46   ------>ZmHOX2a(1)     --- ------>At4g35610    --------->ANAC46       <---------ZAT14 --------->DEAR3(1)         --------->ANAC58 -------At4g35610------>ZmHOX2a(1)          <---------ZAT18 --------->RAP2.3(2)        --------->ANAC58 --->TGA2(2)    --------->ANAC46<-----------GT1         <---------LBD16--------->DEAR3(1) ----------- =======================HOX2a_HOX2a         --------->ZAT14--------->RAP2.3(1)       --------->MYB46(3)   agcagtcgtctcactcatcctccacgaaccgttataactctcgctctgcacaatcttctccgccgctcaaccaccgtcctacttggaaccagcaacactc  3261400                                                                          <---------ANAC58                      >>>>>>>>>E2Fc                                       <---------ANAC58                      >>>>>>>>>E2Fd                            <---------ATERF1(1)      ------>MYB46(1)                     --------->LBD16                          --------->ANAC46          ------>MYB83                     ------>NtERF2                        <----------TaMYB80  ------>NtERF2                    --------->ANAC46            <-----------HVH21         <---------ANAC46                    --------->ANAC58    ------>ZmHOX2a(2)--------->ARR14(2)  --------->LBD16                    --------->ANAC58    --------->YAB1   <---------ARR14(2)<---------LBD16  <---------ZAT18  <---------LBD16  ----------->HVH21  <------NtERF2   --------->ARR14(2) -ALFIN1          >>>>>>>>>>E2Fb  <---------ANAC58  <------NtERF2      <---------ARR14(2) ------------>AtSPL8<<<<<<<<<<E2Fa<---------ANAC46 <---------SPL7 ------>NtERF2       <---------MYB59 >RAV1(1)       <-----------GT1   <---------ANAC58<---------DEAR3(1)   <---------MYB52(1)         <--   tcagtaccctaactcaaatttcccgccaaattacaggcgtgatcgtaatccgtcgtcgggatactcgcctccagttacgcgggctagacctaatttcatc  3261500                       ----------->HVH21                      <---------MYB52(2)                     <---------At4g35610                    --------->DEAR3(1)                    --------->RRTF1(3)                    --------->RAP2.3(2)                    --------->RAP2.6(2)                   --------->RRTF1(1)                   --------->ATERF1(1)                   --------->RAP2.3(1)                   <------NtERF2                  ------>NtERF2                  --------->ABI4(1)                  <---------RAP2.3(1)                  <---------ATERF1(1)                 --------->ANAC46                 <---------ALFIN1                 <---------DEAR3(1)                 --------->ATERF1(2)                 --------->DEAR3(1)                 <---------ATERF1(2)                 --------->RAP2.6(2)                 --------->RAP2.3(2)                 --------->RRTF1(2)                 --------->RAP2.3(3)                 --------->RRTF1(3)                <------NtERF2                --------->RAP2.6(1)                --------->ATERF1(1)                --------->RRTF1(1)                --------->DEAR4(2)                --------->ORA47(2)               ------>NtERF2               --------->ABI4(1)               <---------ATERF1(1)              <---------ALFIN1              --------->ANAC46              --------->DEAR3(1)           --------->ANAC46         <---------ALFIN1    ----------->HVH21       <-----------HVH21  --------->ZAT6     --------->At4g35610--------->MYB52(1)  --------->At4g35610------>NtERF2                                                                ---  --------->ZAT2--------->ERF1        --------->ZAT2                                 <----------DOF2  <---------At4g35610--------->At4g35610                                            <---------ANAC58  <---------ZAT2--------->RAP2.3(1)   <---------ZAT2                            <----------DOF2   --- ---------HVH21--------->LBD16     ---------->DOF2                 <------ZmHOX2a(2)<---------ANAC58   gttcagctgcttcaccccgccgccgctaacagtgacacaaagctgtgtttttcgactaagaaacaagagatcgagagtctcgctttgctttgcgaaattc  3261600                                                                                 --------->ALFIN1                                                                                 <---------AtMYB61                                                                      --------->ZAT18                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                <---------MYB46(3)    <------NtERF2                                                                <---------DEAR3(1)<---------MYB46(3)                                                             <------MYB46(1)   <---------ANAC46                                                             <------MYB83 <----------DOF2 -----------                           <-------GAMYB                   --------->ALFIN1    <---------ANAC58                         --------->MYB59                 --------->MYB52(2)  ------>NtERF2<----------DOF2              <-------MYC3<------MYB83                <-----------HVH21 --------->ZAT18 <----------DOF2  <------ZmHOX2a(1)    --------------------->WRI1     <-----------TGA1<---------ZAT18<---------MYB46(3) ------>LBD16 ------->MYC3<------MYB46(1) <---------HSFC1(2)--------->MYB55(2) <---------bZIP60(2) --->ZmHOX2a(1) ------->TEIL              --------->HSFC1(2)<---------MYB46(3) <---------ANAC58   ctgaggaatcaattcatgtgcctcaatttggttgtatcgctggaagtttcagttttcgtcagtgggtcgatgcgcgctctgccgtggtggctctttggga  3261700  Previous    Next  AGI:  At5g10370.1    Description:  helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related. similar to helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT4G01020.1); similar to hypothetical protein OsI_025976 [Oryza sativa (indica cultivar-group)] (GB:EAZ04744.1); similar to hypothetical protein OsJ_024178 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40695.1); similar to 117M18_19 [Brassica rapa] (GB:AAZ66938.1); contains InterPro domain Region of unknown function DUF1605 (InterPro:IPR011709); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPr Range:  from: 3261246    to: 3267345    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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