Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->YAB1                          <---------MYB59                    ----------->GT1       --------->At5g28300                         ----------------->AGL1          --------->ARR14(2)     ------->GAMYB                     <----------DOF2                     <---------ARR14(2)    --------->ANAC46          ------->TEIL   ----------------->AG      <---------ARR14(2)         ------>MYB83<---------YAB1  ------->GAMYB   <---------AHL20(1)               --------->ARR14(2)         ------>MYB46(1) --------->RAV1(1)<---------ARR11(3)               <---------GLK1(2)         --------->MYB52(1) ------->MYB52(1) --------->ARR11(3)   --------->YAB1<-------TEIL           --------->AtMYB61       <   acaacagaaatgaaactcaatatctttaccaaaatcgacaatgttgattttcagattcagaactggttatatatcagaccaacgcagtaaacatcataga  3259800                            ------>ZmHOX2a(1)                          ==================================HOX2a_HOX2a                          ------>ZmHOX2a(2)                         ===================================HOX2a_HOX2a                         <------ZmHOX2a(2)                        <---------ARR14(2)            <---------TOE1(2)                        --------->ARR14(2)           ------>ZmHOX2a(1)                        <---------ARR11(3)     <---------MYB52(2)                        --------->AGP1       <-----------GT1                        <---------GLK1(2) --------->YAB1             --------->At4g35610  ----------->GT1   --------->TOE2(2)                    ------->TEIL          <---------At4g35610     <---------ZAT6    --------->TOE1(2)                --------------->AtSPL8 ---------HSFB2a(2)     --------->ARR11(3)----------->GT1      <---------TOE2(3)    <-----------GT1   ttccagtaatgcatcagctataaacagatcctagcagtgtgaaatagtaactatcctacgattcaaaggtttggattcaaagaattttacgaacttcata  3259900                         --------->ANAC58                         <----------ID1                                   ------>ZmHOX2a(2)                         --------->ANAC46                                <------ZmHOX2a(2)                  --------->ANAC58                                      <---------ARR14(2)                  --------->ANAC58                                      --------->ARR14(2)               --------->ZAT14                                          --------->ARR11(3)               <---------REM1(2)                                        <---------ARR14(3)               <---------ZAT14                                          <---------AGP1           --------->ANAC58                                             <---------ARR11(3)           --------->ANAC46  XXXXXXXXXXXXXXXXXXX>MIR158B                --------->ARR14(3)           --------->ANAC58  XXXXXXXXXXXXXXXXXXX>MIR158A            ---------->DOF2      <---------ZAT18    --------->ANAC58              ----------->GT1----------->ARR10            -- <---------GLK1(2)--------->ANAC46            --------->AtLEC2 ---------->DOF2           ------>ZmHOX2a(2)   gcagattgttcacactctacactcaataagccaaatgtaaacaaatccatgaagaaaatgtgatttaaagcaaagatcttacagtttttgatcgtcatcg  3260000                                     <---------ANAC46                                    <------NtERF2                              <---------WOX13(1)                             --------->ARR14(2)                             <---------ARR14(2)                       <---------MYB46(3)                      <---------AtMYB61                      --------->ALFIN1                     <---------MYB52(1) --------->WRKY12                    --------->LBD16------>NtERF2                                         ----------->GT1                  <---------LBD16 ----------->TGA1                          --------->ANAC58         <----------DOF2  --------->ETT(1)      ----------->RAV1(1)         --------->ANAC46      --------->GLK1(2)--------->MYB55(2)      --------->ANAC46             --------->ANAC58--------- ---->ZmHOX2a(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->ATHB12     ---------->DOF2   atctcgagtttcttttgacacccggtggtcggattggcgacgttgaactgcgacacaaaccaaaatcgattgaatcaaacgaaataacaaagagataaac  3260100                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                    ------->GAMYB             -------                                                                   --------->MYB46(3)      --------->CCA1(2)                                                                --------->REM1(1)         --------->ARR11(3)                                ------>NtERF2               --------->At4g35610     <---------WOX13(1)                               <---------ALFIN1             <---------At4g35610   --------->ATHB12                              --------->ATERF1(1)        <---------At4g35610     <---------YAB1                             <---------ATERF1(1)         --------->At4g35610   <---------At4g35610 >CCA1(2)           ---------->DOF2                      <---------ZAT2   <---------ANAC58<---------ARR11(3)   gagaacagaattgatgagaagaaaaagatggagccaccttcatcgtctccgatagacactgctgctacaacagcctgcgtaagatgattgaagatataaa  3260200                  <----------DOF2           <---------At4g35610           <------NtERF2           <---------ZAT2           --------->ZAT2                                                        <---------WOX13(1)           --------->At4g35610                                            <------MYB83         <---------DEAR3(1)                                               <------MYB46(1)        ------>NtERF2              *TSS                                   ----------->GT1       --------->ANAC46        <---------ANAC58                          --------->MYB59       <---------O2            <---------ANAC46                          --------->MYB111(1)   <-----      <---------REM1(2)        <---------ANAC58                          --------->MYB46(2)    ------    ----------->HVH21  <---------TOE1(3)       --------->ANAC58         <--------P   <------------CBF   <---------HSFB2a(2) <---------TOE2(3)       --------->ANAC58 ------------>CBF<------------CBF -->AHL20(2)    <---------At4g35610---------->DOF2         <------ZmHOX2a(1)  <---------AHL20(2)   <-   atgctctcgacgcggctcagcttttagggttttgcgagaaagttgagagaagcaacttataggagaaccaataggtaggtttaattgaattgggcctaca  3260300               <---------AHL20(1)               --------->AHL20(1)               <---------AHL20(2)               --------->AHL20(2)              --------->AHL20(2)           --------->ATHB51           <--------HAHB4           <---------ICU4          --------->ICU4          <---------ATHB12     --------->PCF2                              --------->DAG2                   <---------------AtSPL8     <---------PCF2                <---------AHL20(2)                             --------------->AtSPL8 ------------AGL3         <------------CBF      ---------->DOF2               <---------YAB1 --->REM1(1)  <---------AHL20(2)   --------->AHL20(2)                      <---------YAB1  --------->AHL20(2) --------AHL20(2)      ------------>CBF----------->GT1                    --------->AHL20(2)   ttttatgggcccataattaaatttgggcaattgacaaaaaattgttaaaaaaaagttatggacaacaattctaaatttttataaatagtactataaattt  3260400                                                                                                  <--                                                                                                 <---            --------->AHL20(2)                                        --------->YAB1             ----            <---------AHL20(2)                                    <---------AHL20(2)             ----           --------->AHL20(2)                                    --------->AHL20(2)              ----           --------->YAB1                                        <---------AHL20(2)              <---           <---------AHL20(2)   <---------AHL20(2)           --------->AHL20(1)                  <---       --------->AHL20(2)      --------->YAB1                --------->AHL20(2)        ----------->GT1     --------->TOE2(3)        --------->AHL20(2)             <---------AHL20(2)   <---------AHL20(2) --------->AHL20(2)     ----------->GT1                      <---------AHL20(1)   --------->AHL20(2) <---------AHL20(2)    --------->CCA1(2)                    --------->AHL20(2)--------->ICU4    -----   catttaaacttaattaaaatataagatagaaaataaaaatgagagcaaacatttatctaatattaaattaaatcagaataatttttaaatagtagaaaat  3260500        --------->YAB1    <---------AHL20(2)    --------->AHL20(2)                                       --------->YAB1   --------->AHL20(2)                                        --------->TOE2(3)  <---------AHL20(2)                                       --------->GLK1(2) -------AHL20(2)                  <----------ID1           --------->ARR11(3) ------ARR11(3)                 --------->ZAT6             <---------ARR11(3) ----->ARR11(3)               --------->YAB1              --------->CCA1(1)                         - ----->AHL20(2)              <---------YAB1               --------->RVE1(1)                       --- ----->AHL20(1)             --------->AHL20(1)        --------->AHL20(2) --------->GLK1(1)       ---- ------AHL20(2)             --------->AHL20(2)       --------->AHL20(2)  <---------GLK1(1)      ----- ------AHL20(1)             <---------AHL20(1)   --------->AHL20(2)--------->AHL20(2)          ------ ---->AHL20(2)             --------->YAB1        <---------AHL20(2)<---------AHL20(2)  <---------ZAT6   atattttaaattagaattagagaactcaaatataatactacaaactaatattaaaataaaaaatcttaataaatgaaatccaatttctagtgaaaaaaaa  3260600                                                                 --------->ATHB51                                                                 --------->ATHB12                               <---------WOX13(1)                -------->ATHB1                             --------->ATHB12                    <---------ICU4      <---------AHL20(2)    <---------YAB1                      <---------ATHB51     --------->AHL20(1)   <---------ICU4                        --------->ICU4     --------->AHL20(2) <---------TOE2(3)                       <---------YAB1     <---------AHL20(1) <---------YAB1                       ----------------->AGL3     <---------AHL20(2)--------->AHL20(2)                    <-----------------AGL2 -------->AHL20(2)     --------->YAB1                        ------------>ATHB5 -------->GT1          <---------AHL20(2)                   ------>NtERF2 ------->GT1      --------->ARR11(3)                       <---------PCF5          ---------->DOF2 ---->DAG2        <---------ARR11(3)              ------>ZmHOX2a(1)         --------->ATHB12 ---->DOF2       <------ZmHOX2a(1)    <-----------GT1 ---------->DOF2      <---------YAB1           <   agttaaataaaatttagtaggatattaatattgattgatataactctgtctcctctcaaaggggccattattggtttatgatttcaaaagagttttagtg  3260700  Previous    Next  AGI:  At5g10360.1    Description:  EMB3010 (EMBRYO DEFECTIVE 3010); structural constituent of ribosome. Identical to 40S ribosomal protein S6-2 (RPS6B) [Arabidopsis Thaliana] (GB:P51430;GB:O04670;GB:Q9LX91); similar to RPS6 (RIBOSOMAL PROTEIN S6), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G31700.1); similar to 117M18_18 [Brassica rapa] (GB:AAZ66937.1); contains InterPro domain Ribosomal protein S6, eukaryotic; (InterPro:IPR014401); contains InterPro domain Ribosomal protein S6e; (InterPro:IPR001377) Range:  from: 3258475    to: 3260235    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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