Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   --->ZmHOX2a(2) ----->At4g35610 ---ZmHOX2a(2) ---->ARR11(3) ---->GLK1(2)                                                   <---------GLK1(2) -----ARR11(3)                                             --------->MYB52(1) -----ARR14(2)                                      --------->ANAC46 ------>ZmHOX2a(1) -----AGP1        --------->ANAC58        --------->DAG2  --------->YAB1                   --------->ARR11(3) ---->ARR14(2)    --------->ANAC58       ---------->DOF2 <---------ATHB12                  <---------ARR11(3) -ZmHOX2a(1)  --------->ANAC58         ------>ZmHOX2a(1)--------->ANAC58               ---------->DOF2 --TOE1(2)    --------->ANAC58        --------->TOE2(3) --------->ANAC58------>ZmHOX2a(1) --------->YAB1   tctgaaacaaattgttaagcaagaaacagaagttcaatttcctaaaagtaatctacacaatcaacagattcctcctagtatatcaaattcaaagatagtc  3257400                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                                <----                                                                                             --------                                                                               <---------At4g35610                                                                               <---------CCA1(2)-----                                                                         <---------ANAC58    <-------                         ---------->DOF2                   <----------DOF2    ------->TEIL   --------                       --------->ANAC58                <---------CCA1(2) <---------ANAC58    <-------                     --------->MYB52(1)         <---------At4g35610      <---------ANAC46 <---------ZAT18    --------->MYB52(1) --------->ANAC58         --------->At4g35610 <----------DOF2       --------->ZAT18   tcgagcaaacgaattcaaaaaaaaaacgaaagagtcacaaaaccttgagtagctcccatttctttttcgacttttgcttgcatctctcgtagcgcagcag  3257500                                            <---------YAB1     ------>ZmHOX2a(1)                      ------>ZmHOX2a(1) ------GLK1(2)                         <---------ZAT2 -----HSFC1(2)                         <---------At4g35610 ---->HSFC1(2)                        --------->ANAC58                                            <-- -----At4g35610                       --------->ANAC58                                        ------- ->ZAT2                            --------->ZAT2                                          --------->ANAC46 ---->At4g35610                    --------->At4g35610                                     --------->ANAC58 --ZAT2<---------ALFIN1       --------->At4g35610                                          --------->ANAC58 ->At4g35610            ------>ZmHOX2a(1) ----------->RAV1(2)  <----------ID1            --------->ANAC46 --At4g35610  <----------DOF2 <---------At4g35610         --------->YAB1              <---------REM1(2)   cttcttcctccatctcctttaatctcctcttcatctcagcaagctcctgattccatgaaatcaaaacaccaaaaatcaaacagatgtatacacacgatat  3257600                                                                                   <---------HSFB2a(1)                                                                                   --------->HSFB2a(1)                                                                                  <---------KAN4(2)                                                                                  ---------->TaMYB80                                                                                  ----------->ARR10                                                                              --------->HSFB2a(2)                                                       --------->At4g35610    <---------HSFB2a(2)                                                    --------->At4g35610      ------>ZmHOX2a(2)                                              ------>ZmHOX2a(1)              <---------LBD16                                              =====================================HOX2a_HOX2a                                           <------NtERF2                    <------ZmHOX2a(2)                                          ------>NtERF2--------->ZAT14     <---------ARR14(2)       <                                          <---------SPL7                 --------->LBD16        -----                                         <---------ANAC58            <---------ARR14(2)   <---------ARR14(2)                                         --------->DEAR3(1)          --------->ARR14(2)   --------->ARR14(2)                                       ------->GAMYB<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)      --------->SPL7                                    --------->MYB52(1) <---------ZAT14 ----------------->AGL1  ------                                    --------->ARR14(2) <---------At4g35610 --------->ARR14(2)  ------       --------->YAB1               <---------ARR14(2) <------NtERF2--------->GLK1(1)    <---------CCA1(2) --------ID1         --------->At4g35610 <---------ANAC58           <---------GLK1(1)  <---------ANAC55(2) -->CCA1(2)   --------->TOE1(2)    ----------->HVH21<---------At4g35610<---------LBD16 --------->ANAC55(2)   acaacaaaatcaaaatcgaacgaagcagaagtagaccgtaacggcgtcctcatcggctgcagacatatcgatatccggatcgggaacatccgtatcgccg  3257700                                                                         --------->MYB52(1)                                                                     --------->ANAC58                                                                     --------->ANAC46       --------->GLK1(1)                                        --------->At4g35610       <---------GLK1(1)    <---------ZAT18                     <---------At4g35610   --------->LBD16        ------->PIF5                          --------->GLK1(1) ---------ZAT14           <-------PIF5                          --------->ZAT2 ->NtERF2          ---------->DOF2                              <---------ZAT2              <-------- --->DREB2C(2)   --------->At5g28300              <-----------GT1    --------->ANAC58     <----------DOF2 --->DEAR3(1)<---------ALFIN1          ------>ZmHOX2a(1)   <---------LBD16      ---------->DOF2     -   acttcagggatttctccaccgtaaacctcgtgctcttcttcctccatttttgtttccactcttcggagctcaagcaaacgaataaagcttcgctttggtg  3257800                                     <------MYB83                             <------ZmHOX2a(2)           <-----------HVH21                            --------->ARR14(2)          --------->bZIP60(1)                        ------>MYB83 <------MYB46(1)    <---------bZIP60(1)                        --------->MYB52(1)              <---------O2                        -------->P  --------->MYB59--------->MYB52(1)                        ------>MYB46(1)         --------->ANAC58              <-------GAMYB                       ------>ZmHOX2a(1)  <------------CBF      <---------ANAC55(2)                       =============HOX2a_HOX2a --------->ANAC58<---------ANAC46        *TSS     <----------DOF2  --------->ARR14(2)    --------->O2       <------NtERF2 -AtMYB61    <---------ZAT18<---------ARR14(2)  --------->ANAC46--------->ANAC55(2) -------->YAB1   <---------DAG2   <---------ARR14(2)  ------->GAMYB<------------CBF   aatgaaaacgacttgcacacttttcctaccgatccagataggtcgattgcaaacaacgacgtcgtctcgtattgggcctcggttacaaacttacaagagc  3257900                                                                             <---------ICU4                     --------->GLK1(2)                          --------->ATHB12  <---------HSFB2a(2)                     ------->TEIL<---------YAB1                 --------->YAB1    <---------TOE2(3)         --------->ZAT6    <---------TOE1(3)                   <---------ATHB12   <---------YAB1    --------->YAB1   --------->ARR14(2)                        <---------YAB1--------->YAB1      ----   <---------YAB1    <---------ARR14(2)                   ------>NtERF2 <------NtERF2          <----- --------->YAB1     <---------GLK1(2)                  --------->RAP2.6(3)  <---------ATHB12   <-----   ccattatcataacactctaactgaatctgaaggttttgatttttcttcaaaattcaattcggcccatcataggccccaaacattatggaagaaacaggct  3258000                                                ------>MYB46(1)                                                ------>MYB83                                      <---------AHL20(2)       --------->AHL20(2)         --------->AHL20(1)                                             ----       <---------AHL20(2)         <---------AHL20(1)                                             <---    --------->AHL20(2)            <---------AHL20(2)                                            <----    --------->ATHB51             <---------AHL20(2)                                          <------- ------->GT1                     --------->AHL20(2)                                         <-------- ----ANAC58                <------ZmHOX2a(2)  <---------MYB59       --------->YAB1          --------- ----ANAC58     --------->AHL20(2)--------->AHL20(2)        ----------->GT1           <------ZmHOX2a(2)   tgtgaataatttatcaaattatatcatggatcaaattaaatttatggaccaaattaagaggtctgtgaaataatactgcataatatggatcagattaatt  3258100                                                                                         <---------ARR11(3) ----->AHL20(2)                                                           <----------DOF2--------->ARR14(2) ------AHL20(2)                                          --------->ARR11(3)      --------->ANAC46 -----AHL20(2)                                 <---------ICU4             <---------DAG2 <---------ARR14(2) --AHL20(2)                                   <---------ATHB51      --------->YAB1       --------->ARR11(3) -AHL20(2)                                    --------->AHL20(2)    <---------ICU4      <---------CCA1(2) >AHL20(2)                 <---------YAB1------>ZmHOX2a(2)    --------->YAB1    --------->LBD16   tatatcagagacaaattatccacaaaaatatgatacagtttgatccaaattattccaaaggtattgataagaatgacttttccccaaaacatatctacag  3258200                    <---------YAB1                    <---------AHL20(2)                   --------->AHL20(2)              --------->AHL20(1)              <---------AHL20(1)              --------->AHL20(2)              <---------AHL20(2)       --------->ARR11(3)  <----------DOF2          ----------->GT1             <---------AHL20(2)    ---------->DOF2        --------->TOE2(3)      <-----------RAV1(1)             --------->AHL20(2) --------->ANAC58        ------>MYB83        -------->P            ---          --------->AHL20(2)    --------->ANAC58        -------->P          >>>>>>>>>>>>>>>>>LFY  <--         <---------AHL20(2)   ---------->DOF2 ---------->ID1             <---------ANAC58        ----         --------->AHL20(2)  <---------MYB52(1)         ------>MYB46(1)<-----------GT1           <---  ----------->GT1  <---------AHL20(2)  <---------ARR11(3) <---------DAG2 <---------ANAC58       <----   ccatttgttaaataaataaattttaattgcagttaagcaaagttcttcgtcttcttccaacctttttagttttttacttaccactgttgtaaaacagagg  3258300  Previous    Next  AGI:  At5g10350.1    Description:  polyadenylate-binding protein family protein / PABP family protein. similar to polyadenylate-binding protein family protein / PABP family protein [Arabidopsis thaliana] (TAIR:AT5G65260.1); similar to poly(A)-binding protein II-like [Brassica rapa] (GB:ABL97957.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 3255435    to: 3257808    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version