Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------ANAC58                           <---------YAB1                          --------->AHL20(1)                     --------->AHL20(1)                     --------->AHL20(2)                     <---------AHL20(1)                                                     <--------                     <---------AHL20(2)                                                   <---------AHL20(2)      <---------TOE1(3)   <---------AHL20(2)                                             <---------AHL20(2)      <---------TOE2(3)   <---------AHL20(1)                                             --------->AHL20(2)  <----------DOF2   --------->YAB1  <---------ANAC46                                  <---------AHL20(2) -------GT1         --------->AHL20(2)--------->ALFIN1                               <---------AHL20(2) ----YAB1          <---------YAB1   <---------ANAC58                           ---------->ID1 -------   actggtttaaggcatttagctattatattatatttatggagtggaggtaagaagacaacatttttctaagtattctagtttgttttttttatttattaaa  3252700                                                       <---------AHL20(1)                                                     <---------ARR11(3)               <---------ZAT14                       <---------AHL20(1)               --------->ZAT14                       --------->ARR11(3)               --------->ZAT18                       --------->AHL20(1)        <----------DOF2                           --------->AHL20(2)       <---------ANAC58                  <---------ICU4--------->ARR11(3) --------->ARR11(3) -YAB1 <---------ANAC58<---------AtLEC2  --------->YAB1--------->AHL20(1) <---------ARR11(3)  <------ --->DOF2   ----------->RAV1(2)---------->DOF2    <---------AHL20(2)--------->CCA1(2)     <----------DOF2   gcagtaagtgcttaacctgcactatgcatgagcaaaagtctaaaaatgatataaaaatattttgtaatagatttgagatgttttgtttctcactttgaat  3252800                                                                                       <---------TOE2(3)                                   <----------DOF2                                  <---------MYB52(1)                        <------------CBF                                         <---------TOE1(2)                      --------->AHL20(1)                      <------------CBF   ------>MYB46(1)                      <---------AHL20(2)                 ----------->GT1         <---------TOE2(2)                      --------->AHL20(2)             <---------TOE2(3)           ------>MYB83       <                     --------->AHL20(2)             ---------->DOF2            --------->TOE2(2)    -                     <---------AHL20(2)            --------->AHL20(2)          --------->TOE1(2)    - ---AtLEC2 <----------DOF2       <---------DEAR3(2)<---------AHL20(2)    <---------ARR11(3)      <---   gaaaaaaaaaaaacttttactaaaaaaattgttgtcggtttatgtataagaaattaaagttgaaaattgaaccaagataaacctacgttatggattatag  3252900      <------------CBF    --------->MYB46(3)    <---------ATHB12   -------->P   ------>MYB83   >>>>>>>>>>>>>>>>>LFY   ------>MYB46(1) --------->AtMYB61 <---------MYB111(1) ---------MYB52(2) -------->DEAR3(2)                                       ----------->HVH21 -------->MYB46(3)                             --------->ATHB12 ---ZmHOX2a(1)         <----------DOF2 ------->TEIL      <---------ETT(1)                     -------   gaaccaaccattgtcttcacttcatctttttcaacatactgtatgtttttgatttgagtccgacccgaattagtcaagtttcagttttaatgggcttcat  3253000                                                                             ------>NtERF2                                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                           --------->ATERF1(1)                                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                          <------ZmHOX2a(2)                                                                         ------->TEIL                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                         --------->ARR14(2)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                  --------->ANAC58                                                                  --------->ANAC58            xxxxxxx                                                                  xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxx                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         -------                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <------                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxx                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <-----------HVH21                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxx                                            <------MYB83    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                            <------MYB46(1)xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxx                                            <---------MYB46(3)  ---------->DOF2   xxxxxxxxxxxxxxxxxxx                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)                                          <--------P --------->ALFIN1    xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         xxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ARR14(2)--------->LBD16                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(s)                                       <---------TOE1(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->LBD16xxxxxxxxx                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i)                                       <---------TOE2(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)------>ZmHOX2a(2)xxxxxxxxx                                      xxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)                                     xxxxxxxxxxxxxxxxx>smallRNA(si3)   ----------->ARR10 xxxxxxxxxxxx                                     xxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxx>smallRNA(s)                                     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    xxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(i)                                   ------>NtERF2xxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s)                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  ------->GAMYB<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  --------->ANAC46  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxx                                  --------->ANAC58  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------SPL7                                  --------->ANAC58 <---------ANAC58 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 <---------MYB55(2)<---------ANAC46xxxxxxxxxxxxxxxx>smallRNA(i)                                 --------->MYB46(3)<---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -->REM1(1)    ------->TEIL     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   caacaagtttacatatggacttaggctcgattccacccgcctaggttggatgggcgtgcttcgttggaaagcatggatccgcctaggctgtcccgagtgt  3253100            <-----------HVH21       xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           ----       xxxxxxxxxxxxxxxx>smallRNA(si3)                                                            ----       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxx>smallRNA(i)                <xxxxxx     --------->ALFIN1                      --------->ANAC58               xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->ANAC58           xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------ANAC46      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->RAP2.6(3)    ---------  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------ZAT18           --------->MYB52(1)      <-------- xxxxxxxxxxxxxxxx>smallRNA(l2)            --------->ZAT18        --------->MYB46(3)     <-----------HVH21 xxxxxxxxxxxxxxxxx>smallRNA(l2)        <---------ANAC46         --------->ANAC58        <xxxxxxxxxxxx -->ALFIN1 --------->ALFIN1            <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxx ---ZAT6   <-----------RAV1(1)         <---------ANAC58<---------ZAT14<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) >smallRNA(i)  ------>NtERF2       <xxxxxxxxxxxxxxxxsmallRNA(i) --------->ANAC58  --------->GLK1(2) xxxxx>smallRNA(i)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ------>NtERF2      --------->ARR14(2) xx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->DEAR3(1)  <---------ARR14(2) xxxxxxxxxxxxxx>smallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->SPL7    --------->bZIP60(2) xxxxxxxxxxxxxx>smallRNA(l2)   xxxxxxxxxxxxxxxx>smallRNA(s) ------>NtERF2 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ALFIN1<------ZmHOX2a(1)  ---- xxxxsmallRNA(i)<------NtERF2  xxxxxxxxxxxxxxxx>smallRNA(i)--------->ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   gagcgaggtgtgagtgtcgcccatggggacatctcggtatttcgtgcgcaagacgactataccgccacccaaacggcctaggagaatccatgtcagccca  3253200                             ----------->GT1                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        xxxxxxxxxxxxxxxx>smallRNA(i)       --------->ANAC58  <------NtERF2                                                   --------->ABI4(1)       --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              ----------->GT1    -------       --------->ANAC58 ------>NtERF2                                    <xxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->bZIP60(2)  --------->DEAR3(1)                          --------->AtLEC2     <---------ALFIN1  ----------->HVH21    <---------DEAR3(1)       <xxxxxxxxxxxxxxxxsmallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->DEAR3(1) ----->ANAC58          ----------->HVH21     --------->ALFIN1     --------->TOE2(2)     --------->AtMYB61 ----->ANAC46       <---------DEAR3(1)     <---------ANAC58       --------->TOE1(2)  --------->ANAC46 xxxxxxxxxxxxxxxxsmallRNA(se3)        <---------ARR11(3)       --------->ARR11(3)  <---------At5g28300 >At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <------ -At4g35610<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ANAC58    <---------ARR11(3) <-----------GT1 xxxxxxxxxxxxsmallRNA(si3)<---------O2--------->ARR11(3)  --------->At5g28300<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxsmallRNA(le3)    ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)------>NtERF2 ----->ANAC58    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------>NtERF2   tgccatgacacgcccattctcttcggcgacgaggtgaaaagatgtccgtggggacatctcggtaatatcatgcgaacaagttatataccgccacccctag  3253300                                                                           --------->ICU4                                                                         --------->YAB1                                                                         <---------ICU4                                            --------->ANAC58            <---------ATHB51 <---------ICU4                                            ----------->GT1             --------->ICU4   --------->ATHB12                       <---------------AtSPL8                           --------->AHL20(2)                       --------------->AtSPL8<-----------HVH21          <---------AHL20(2)       <---                       --------------->AtSPL3--------->TOE2(3)      <---------AHL20(2)  --------->AHL20(2)                     <------MYB83           --------->ANAC58        --------->AHL20(2)  <---------AHL20(2)   <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------AHL20(2)           --------->AHL20(2)        --------->ICU4 -->STY1(1)          <------MYB46(1)<-----------RAV1(1)       <---------AHL20(2)  <---------ZAT6 ---- xx>smallRNA(fl3) <------ZmHOX2a(1)<---------TOE2(3)      --------->AHL20(2)  <---------YAB1 -------- ---STY1(1)   ---------->DOF2   --------->AHL20(2)        <---------AHL20(2)<-----------GT1  <-------   gccttgaagaacaccgaaaaggatggtagtactatttaatgttggaacgtcaaatgagattaaaataaatataaataattactagtggtattaattgcac  3253400                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                    <---------TOE2(1)                                                                    <---------TOE1(1)                                                                   --------->SPL7      <---------YAB1                                             <---------SPL7    ----------->GT1                                              --------->ZAT18    --------->YAB1         <----------ID1                        --------->TOE1(2)  <---------ICU4   --------->ICU4          ----------->GT1                      <---------ANAC58    --------->ATHB51 ----PIF5                 ----------->GT1                       <---------ANAC58   <---------YAB1 --->PIF5           --------->AHL20(2)                         --------------->AtSPL3    <---------YAB1 ->ZAT18        ----------->GT1              <---------YAB1    <---------------AtSPL8  --------->YAB1 --ZAT18  --------->AHL20(2)     --------->AHL20(2)          <-----------GT1       --------->ICU4   ttgcaattgttataaaataagaaaaaatagggaaaaaaaatacaaatatgaaaaacagaaatttaagcgtacgatgttagaagacataattgtaatagaa  3253500                                                                                 <------ZmHOX2a(1)                                                                                 <----------ID1                                                                           <---------YAB1                                                                           <---------TOE2(3)                                                                     <---------AHL20(2)                                                                     --------->AHL20(2)         <----                  <------ZmHOX2a(2)                            ----------->GT1--------->CCA1(2)------   ------>ZmHOX2a(2)        --------->YAB1          --------->AHL20(2)<---------AHL20(2)       <-----   ttagatcggaacaaattcagatcgaatgaataatagattagatcgaagataagtttaaatcgaatgagtaattaaataagataggaacaagttcaaatta  3253600  Previous    Next  AGI:  At5g10340.1    Description:  F-box protein-related / SLF-related. Identical to F-box protein At5g10340 [Arabidopsis Thaliana] (GB:Q9LX89); similar to S locus F-box-related / SLF-related [Arabidopsis thaliana] (TAIR:AT2G34280.1); similar to predicted F-box and bHLH containing protein [Overexpression vector pFC12860OE] (GB:ABK41847.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 3253123    to: 3255046    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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