Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <----------DOF2                                       ------>ZmHOX2a(2)                                      <---------RVE1(1)                                     --------->ARR14(3)                                     <---------ARR14(3)                                     <---------AGP1                                     <---------ARR14(2)   <---------ZAT18          <---------LBD16  <-----------GT1         ------>MYB46(1)        --------->GLK1(1) ------->ATHB12           -------->P --------->ARR14(2)                         <----------DOF2 -------DOF2              ------>MYB83<------ZmHOX2a(2)                        <---------ANAC58 -->ZmHOX2a(1)          <---------MYB111(1)      <---------GLK1(1)             <---------ANAC58 ---->TOE2(3)           <---------MYB46(2)   <---------TOE2(3)       <-----------GT1 ->ARR11(3)       --------->YAB1     <---------ARR11(3)            ------>ZmHOX2a(2) --ARR11(3)       <---------ICU4     --------->ARR11(3)          --------->ARR11(3) >RVE1(1)    ------>ZmHOX2a(1)     ----------->ARR10             <---------ARR11(3)        ------>ZmHOX2a(2) >GLK1(1)    ================================HOX2a_HOX2a         <-----------ARR10       <---------AGP1 >CCA1(1)    =================================HOX2a_HOX2a ---------->DOF2      <---------ANAC46   tttattgcccttctcctccatcatcacctactcggagaagatcttttatggatttcataagaaagatgatctaaccttcttgcttttagttgatctgtgt  3232200                                                               --------->YAB1                                                              --------->ICU4                                                              <---------ATHB12                                                          <---------ATHB12                                                         --------->ANAC58           <---------YAB1                 <---------ATHB12                        ------>MYB46(1)         <---------YAB1       <---------At4g35610                               ------>MYB83 <-----------RAV1(1)       --------->ZAT2                                    --------->ANAC46     <---------YAB1       --------->At4g35610                               --------->ANAC58<---------MYB46(3)      <---   ttttttatgagctgaaccattcaataacctagactagagttttggattgtgaagagaccaagcaataactatgtgttgttgttattcttcttgacaaatg  3232300                                                                                                    <      <------MYB83                                   <----------ID1                      <---------MYB52(1)      <------MYB46(1)                              ---------->DOF2                      <-------GAMYB     <---------AtMYB61                            <---------AHL20(2)                   <---------MYB46(3)     --------->MYB59                          --------------->AGL15          <---------ANAC55(2)  <--     <---------MYB46(3)                       <---------------AGL15          --------->ANAC55(2)<----     --------->MYB46(2)                      ----------------->AGL3          <---------ANAC55(1)<----     --------->MYB111(1)                     ----------------->AGL1          <---------ANAC46  ------ --------RAV1(2)              <---------MYB52(2)  --------->AHL20(2)    <---------MYB46(3)     ------   caggggtttggtactagggcatagtgatggcaactaatgaactgcttcccaattaaagacaaaaaacaaatcgattgttatgtgtttgtccgttggagac  3232400       --------->LBD16      --------->LBD16     <---------HSFB2a(2)     --------->HSFB2a(2)  <----------DOF2 ---------MYB46(3)       <---------ANAC46 -------At4g35610        <---------ANAC58                                           <---------ANAC46 -----RAP2.6(2)          <---------ANAC58                                           <---------ANAC55(2) -----DEAR3(1)      <---------REM1(1)                  <---------WOX13(1)           <---------ANAC58 --->ATERF1(1)      <-----------RAV1(1)        <-----------GT1 <-----------GT1      <---------ANAC58 --->RAP2.6(3)     <---------TOE2(3)   <------ZmHOX2a(1) --------->ATHB12  ---------->DOF2          -   ggctgttcccgagatgatactgatgttgctttaagacaagaggaagaatttacattgaatgatttttatcacactggtaaaggaatgcgtatgtgagagt  3232500                                                                               --------->ALFIN1                                                                              <-------PIF4                                                                              ------->PIF5                                                                              <-------MYC4                                                                              ------->MYC4                                                                              <-------MYC3                                                                              <-------MYC2                                                                              <-------PIF5                                                                              ------->MYC3                                                                              ------->PIF4                                                                              ------->MYC2                                                                             --------->O2                                                                             <---------TGA1a                                                                    ===================bZIP_DOF                                                               <---------ARR14(2)                                                          <------MYB46(1)    <---------O2                                                          <------MYB83       --------->TGA1a             ----------->GT1                            ===============================MYC_MYB         -------->HAHB4                ----------->HVH21<--------P  ---------->DOF2         --------->ATHB12          ---------->DOF2   <---------AtMYB61*TSS   ========================         <---------ICU4        ----------->GT1  <---------MYB46(3) <------ZmHOX2a(1)        <---------YAB1        --------->DAG2   ========================================MYC_MYB        --------->ICU4      ---------->DOF2    <--------P<---------DEAR3(1) ------------>OsbHLH66 --------->DOF2         <------------CBF  <---------bZIP60(2)  --------->ARR14(2)--------->At5g28300-   ataaaagaaaatgattagaaaaatggaattgaaaggtgaaagtgacatggttgttttggtaggcgaataggaaagaagcacgtggtgaatggacatgaag  3232600                                                                             ------>MYB46(1)                                                                             <---------CCA1(2)                                                                             ------>MYB83                                                                           --------->AtMYB61                                                                           ------->GAMYB                                                                          --------->MYB46(3)                                                                         --------->ANAC58                                                                         -------->P           <------MYB83                                                  --------->ANAC58           <------MYB46(1)                                           --------->ANAC58            ----          <---------TOE1(2)                                          --------->ANAC46          <-----    <------ZmHOX2a(1)          --------->YAB1<---------MYB46(3)      --------->ANAC58         <------ ==========bZIP_DOF --------->AHL20(2)    --------->MYB52(2)      <------NtERF2             <-------- --------->DOF2     <---------AHL20(2)  <---------MYB52(1)     <------ZmHOX2a(1)            ---------   agaaaaggatgctaggtttaatataaattggaataagaagcagttagtggttgtgaaggaaggaaggaggcaagcaaccaaatctcagagacaattataa  3232700                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                                  <---------GLK1(1)                                                                                  --------->GLK1(1)                                                                                 --------->ARR14(3)                                                                                 <---------AGP1                                                                                 <---------ARR14(3)                                                                                 <---------ARR14(2)                                                                         --------->TOE1(2)    -------                                                                         --------->TOE2(2)    <------ <---------ZAT14                                                     ----------->HVH21 ------>ZmHOX2a(1) --------->ZAT14                                                <------ZmHOX2a(2)--------->ARR14(2) ----->ZAT6                                                     ==============================HOX2a_HOX2a ------GT1                                       <-------TEIL  --------->ARR11(3)<---------ARR11(3) ---YAB1                 ---------->DOF2        --------->CCA1(2)  --------->At4g35610 <---------CCA1(2) -ICU4             ---------->DOF2  <---------MYB46(3)         <---------ARR11(3)--------->ARR11(3) >YAB1        ---------->DOF2      <---------MYB52(1)        ----------->ARR10 ----------->ARR10   cagtatagagaaggaagaaagaaaagaaaaagaaaccgttgttgatttagatacagagaagagaagatcatctaacatgggaagatctcctatctctgat  3232800            ---------->DOF2          --------->ANAC58   ------>ZmHOX2a(1)                                         <---------ZAT18          --------->ANAC58 ----------->RAV1(2)                                         --------->ZAT18 -->At4g35610         <xxxxxxxxxxxxxxxxsmallRNA(s)                             --------->ZAT2 ------- ---At4g35610       ------>ZmHOX2a(1)           <-----------HVH21              --------->At4g35610   gactctggtctcaagaaaggtccttggactcctgatgaagatgagaaacttgtcaactatgttcaaaaacatggtcatagtagctggagagcccttccca  3232900                                      <---------ANAC58                                  ---------->DOF2                                       <-----------RAV1(2)                              <---------ANAC58                --------->ANAC55(2)--------->ARR11(3)          --------->ICU4   <----------DOF2             <---------GLK1(2)         <---------ARR11(3)--    <---------TOE1(2)  <----------DOF2<---------ANAC58<---------HSFC1(2)     <---------ZAT14  ------- -->HSFB2a(2)<----------DOF2  <---------ANAC58        --------->HSFC1(2)     --------->ZAT14---------   aactcgctggtaatgcttttgtgttctttctttcttgaaagcttgtcttaagtctaagcttctcatgtgattctctctgtgcaggtcttaacaggtgtgg  3233000                                                                  <---------TOE2(1)                                                                  <---------TOE1(1)                                                                 --------->SPL7                                                               ----------->HVH21                                                               --------->LBD16                                                               <---------SPL7                                                              <---------HSFB2a(2)                                                             <---------LBD16                                                       --------->GLK1(2)                                                      <---------GLK1(2)                                                      --------->ARR14(2)              ------->TEIL        --------->ANAC58                              <---------ARR14(2)             <---------CCA1(2) --------->ARR10                                     <---------HSFB2a(1)       <---------ARR11(3) -->ALFIN1                                           --------->HSFB2a(1)       --------->ARR11(3) --- >ALFIN1--------->ANAC58                            ----------->ARR10 <------ZmHOX2a(1) --------->YAB1   gaagagttgcaggctaagatggacgaactacttgagaccagacatcaagagagggagattctctccggacgaggaacagactatcttgaatcttcattca  3233100  Previous    Next  AGI:  At5g10278.1    Description:  other RNA Range:  from: 3228287    to: 3232724    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g10280.1    Description:  MYB92 (myb domain protein 92); DNA binding / transcription factor. similar to AtMYB53 (myb domain protein 53), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G65230.1); similar to 4D11_23 [Brassica rapa subsp. pekinensis] (GB:AAZ67537.1); contains InterPro domain Myb transcription factor (InterPro:IPR015495); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778) Range:  from: 3232570    to: 3234211    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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