Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              ------>ZmHOX2a(1)              <-----------HVH21                             --------->ANAC46       <------MYB46(1)    --------->YAB1                             --------->ANAC58       <------MYB83      <---------ATHB12            ----------->GT1  --------->ANAC58      --------->MYB59  --------->WOX13(1)            --------->At4g35610            --------->TOE1(3)     ------->TEIL  ---------->DOF2---------->DOF2           --------->TOE2(3)    <---------CCA1(2)   gaacaaaagtaagaagctaaaaagcttcttcacgacattgttcttccttaaatttggttatctcatgtatctatcatggtcgcagaaaaaaacacaaaca  3179000                               <------NtERF2                              --------->LBD16                              ----------->GT1                             --------->LBD16                             --------->RAP2.6(2)                             --------->RAP2.3(2)                            <---------LBD16                           ------>NtERF2                           --------->LBD16                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                        --------->CCA1(2)           <---------AHL20(2)                        --------->ARR14(1)          --------->AHL20(2)                       --------->AGP1              <---------AHL20(2)        --------------->AGL15                       <---------ARR11(3)     --------->At5g28300            <---------------AGL15                       --------->ARR11(3)    ----------->GT1          <---------AHL20(2)     --------                       --------->ARR14(2) ------>MYB83               <---------YAB1        <---------                       <---------ARR14(2) --------->MYB52(1)        <---------AHL20(2)  ---------->DOF2    --------->ARR14(2)--------->GLK1(1)   ------>MYB46(1)         <---------YAB1    ----------->GT1    <---------ARR14(2)<---------GLK1(1)  --------->MYB55(1)     <---------AHL20(2) --------->DAG2 --------->ANAC46    ----------->ARR10  --------->AtMYB61      <---------AHL20(2) ---------->DOF2  --   aacacagaaccgagaaacaacaagagatccgccggaaaaaaaccaaacggtatattaattgtttttttatttttattttctcagaaaagtaaaagagcac  3179100                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                           <------NtERF2                                                                                           --------->ATERF1(1)                                                                                          --------->LBD16                                                                                         <---------DEAR3(1)                                                                                         <---------ANAC46                                                                                        <------------                                                                                        <------NtERF2                                                                                       <---------ATERF1(1)                                               <---------ANAC58                       <---------DEAR3(1)                                            --------->DAG2                           --------->ATERF1(1)                                          ---------->DOF2                           --------->LBD16                                        <------ZmHOX2a(1)                           <---------SPL7                                      --------->ANAC58               --------->At4g35610--------->ATERF1(1)                                    <--------P <---------ANAC58 <------ZmHOX2a(1) ----------------->AGL1            --------->DAG2       --------->LBD16             <------NtERF2        <---------LBD16          ---------->DOF2        <---------TOE2(2)          --------->LBD16   <---------ANAC58 ->ZAT18--------->CCA1(2)       <-----------RAV1(2)        --------->DEAR3(1) <---------ANAC58 ------AtSPL8 ------------------------>ANAC81 --------------->AtSPL3--------->GLK1(2)<------NtERF2 ------->MYB52(1)   --------->MYB46(3)--------->ANAC58    <---------LBD16   --------->ARR11(3)-------   aaaacagaagataaaagggggaacaaatgaaaacccaggtaaggaaaaggcgtacttatcgccggaggagaagctgtagagcttgccggaggcggagacg  3179200                                                                                         <---------At4g35610                                                                                         <------NtERF2                  ----------->HVH21                                                     <---------DEAR3(2)                 <-----------HVH21                                                     <---------DEAR3(1)                --------->ANAC55(2)                                                    <---------RAP2.6(2)                <---------ANAC55(2)                                                    --------->ETT(1)                <---------ANAC58                                  <---------O2        --------->RAP2.6(3)                <---------ANAC58            <----------DOF2       <---------ANAC46   <-----------HVH21       ----------->HVH21            ----------->HVH21             --------->O2    <---------ANAC58 --ATERF1(1)   <-------TEIL       --------->ZAT2               ----------->HVH21  <---------ANAC46 -ARR14(2)   <---------ARR14(2)   <---------ZAT2<---------HSFB2a(2)               <---------bZIP60(2) >ARR14(2)<---------ANAC46        <---------At4g35610       <---------MYB52(1)    <---------ANAC58 -----------TaNAC69(2)            --------->At4g35610      <-------GAMYB     ----------->GT1 -->ATERF1(1)--------->ARR14(2)---------->DOF2  --------->HSFB2a(2)         --------->DAG2    <------   acgagaagagcgacggatgcgtcacagagaacagaaagctgacgagctttctcgatgagaccgttgcgacgtttggagaaggtgacttgtcggctacttt  3179300                                                                                                   <-                                                                                                  ---                                                                                                -----                                                                                                <----                                                             --------->ZAT18            <-------TEIL-                                                --------->HSFB2a(2)              --------->ALFIN1----                                       <---------ANAC58      <---------ZAT18 <-----------RAV1(2)<----             --------->ATHB12          <---------ANAC58 <----------DOF2     ------>ZmHOX2a(1) <------ ----DOF2  <----------DOF2 <-----------GT1      <---------HSFB2a(2)       ------>ZmHOX2a(2)--------->ANAC46   tgttctcaattcgcttgatttctagtttttttcttcccatggcttctctccgagagggctttgtgccctaatttgatcctcaggtttgggttcaagtcgc  3179400  <---------ARR14(2)  <---------ARR11(3)  --------->ARR11(3)  --------->ARR14(2) --------->GLK1(1)                             <---------DAG2 -----NtERF2                               ---------->ID1                                          <- ------>LBD16                         <----------DOF2                                              <- ---->ATERF1(1)                    ---------->ID1                                       <-----------HVH21 --NtERF2                  <---------AHL20(2)  <----------DOF2                 <----------DOF2    --- ---------->ARR10     <------------------------ANAC81                          <---------DAG2     <-- ----->DEAR3(1)    <----------DOF2 <-----------GT1  <-----------GT1      <---------ARR14(2)       <-- -----LBD16  --------->ARR14(2)   <-----------GT1*TSS  <----------DOF2   --------->ARR14(2)       --- ---DEAR3(1) <---------ARR14(2)<------------------------ANAC81          <---------CCA1(2)  <---------DEAR3(2)   cggagatactaagcgttttctctttctatttttttttttccttttctcgctttatttctttctattttttgtgcctatctactttttcttcgtcgggcca  3179500                                                                                                   --                                                                                             ------->TEIL                                                                                             --------                                                                                         ------->MYC3                                                                                         ------->MYC2                                                                                         <-------MYC2                                                                                         ------->PIF5                                                                                         ------->MYC4                                                                                         <-------PIF5                                                                                         <-------MYC3                                                                                         <-------MYC4                                                                                        <---------TGA1a                                                                                        =============               <---------ANAC46                                                         <---------ANAC55(2)              <---------LBD16                                                           =============   <---------AHL20(2)                                                                   <---------ANAC46 --------CCA1(1)                                                                        <--------ABF1 --------RVE1(1)                                        --------->YAB1                  --------->O2 ------>ARR11(3)                              --------->ARR14(2)                        --------->TGA1a -------ARR11(3)                             ------>MYB46(1)                            <---------O2 -------ARR14(2)                --------->AtLEC2 ----------->GT1  <---------ANAC46     <------------- ------>ARR14(2)    <---------WRKY12         ------>MYB83      <---------MYB52(1) <---------WOX13(1)   gatatttttttttttttgggggtaaacgagagtgatgcaaaaaaaccaaatatgtgaataaaaacgttgtgttttgaagacaagattgccacgtgtaccg  3179600                                                                                  --------->ANAC55(2)                                                                               --------->ARR11(1)  <---------ANAC58                           <-------GAMYB                     <---------ARR14(2)  <---------ANAC58<----------DOF2           <---------ANAC58                   --------->ARR14(2) --------->HVH21  <---------DAG2            <---------ANAC58                 --------->ANAC46 ->SPL7   <----------DOF2                   --------->MYB52(2)              --------->SPL7 ====================bZIP_DOF         <-----------GT1                 ------>ZmHOX2a(1) ====================bZIP_DOF--------->TOE2(3)                --------->ARR11(3)  <---------ANAC55(2) ----------TaNAC69(2)  <---------AtLEC2  <----------DOF2      <---------ARR11(3)--------->CCA1(2)   -   catgacgagcgtctttgctacttttgcattgccttagttttcactttcgttgctaaatgaaaactatctttcctcccctacgatacggattgaactattg  3179700            --------->ANAC46          <---------ALFIN1                        --------->TOE1(3)                                 <     ------->TEIL--------->ANAC46                 --------->TOE2(3)                                <-    --------->ARR14(2)              --------->ETT(2)                                               --    <---------GLK1(2) <---------YAB1<---------ETT(2)                                              --- --------->DOF2  --------->REM1(1)--------->REM1(2)             <-----------GT1      --------->TOE2(3)   cagaaagaacctccactctacatcatctttgaactatgtagacatatcgaaacctaaaactggtttgaactcttccgacttctcaaaacttaaaatttgg  3179800          <------MYB46(1)                                      --------->TGA2(2)          <------MYB83                                        <-----------TGA1         --------->MYB111(1)                                 --------->bZIP60(2)     <---------ICU4                                          --------->ANAC46    --------->ICU4                                           --------->ANAC58 <---------AHL20(2)                                          --------->ANAC58 --------->AHL20(2)                                         <-----------STF1 ---------MYB52(1)                                        --------->DEAR3(1) ------GAMYB            <---------ANAC58           <---------ALFIN1      <---------AHL20(2) ------->At5g28300      <---------ANAC58    ---------->DOF2 --------->SPL7        --------->AHL20(2) -------->GT1      ---------->DOF2 ----------->GT1--------->MYB46(3)    --------->AHL20(2)   cagttaattagtaggtgttaccaaagtcgtgcctacatagtaaaaacaaagaaccactcgcctacgtcatcaaattttataaaaaaaaatgtgtttttca  3179900  Previous    Next  AGI:  At5g10140.1    Description:  FLC (FLOWERING LOCUS C); transcription factor. Identical to MADS-box protein FLOWERING LOCUS C (FLC) [Arabidopsis Thaliana] (GB:Q9S7Q7); similar to MAF1 (MADS AFFECTING FLOWERING 1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G77080.4); similar to MADS-box flowering locus C [Arabidopsis arenosa] (GB:AAZ92552.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 3173498    to: 3179449    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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