Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       ----------->GT1                    <---------TOE2(3)                   --------->DAG2               --------->YAB1         <------ZmHOX2a(2)         --------->CCA1(2)        <-----------ARR10        --------->ARR11(3)                                         <---------ARR14(2)        <---------ARR11(3)                                         --------->ARR14(2)        <---------AGP1                                            <------ZmHOX2a(1)        --------->ARR14(2)                                  ---------->DOF2        <---------ARR14(2)                             ----------->GT1                            <--  --------->YAB1  ---------->DOF2   --------->YAB1     <---------MYB46(3)            --------->WRKY38(1) ---->YAB1------>ZmHOX2a(2)        <---------YAB1     --------->ALFIN1               --------->WRKY12 ->DOF2 --------->AGP1           --------->YAB1     <---------bZIP60(2)            <-------GAMYB  ---   acaattacaagatctaagcataaaggtaaaaactttcataataaactcgagatgaagtggttaaaagaggatactttcgatagactgttgactgctattg  3148000                       ------>ZmHOX2a(2)                      <------ZmHOX2a(2)                     <---------ARR14(2)                     <---------AGP1                     <---------ARR11(3)                <---------ATHB12              --------->WOX13(1)            <---------YAB1       <---------At4g35610      --------->ZAT14                                   --------->GLK1(2)       <---------ZAT2--------->ARR11(3)                                          --------->ARR11(3)     <---------ZAT18 --------->GLK1(2)                                           <---------GLK1(2)    <---------ANAC58 --------->ARR14(2)                                          <---------ARR11(3)    <---------ANAC58 <-----------ARR10                                          <---------RVE1(1)   < -------At4g35610   <------ZmHOX2a(1)--------->ANAC46        --------->ANAC46  ----------->ARR10----- ------>At4g35610--------->YAB1 <---------ZAT14     --------->AtMYB61   ---------->DOF2     ---------   agcttagcgagcttatcaatcaggatctgatcactgaacacactactcatcccaccaaaactcacaaaaccctagaaagcagagattttggagaatgtaa  3148100                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                             <-------                                                                                             --------                                                                                            ---------                                                                                            <------NtERF2                                                                                           --------->LBD16                                                                                          <---------DEAR3(1)                                                                                          <---------ANAC46                                                                                          --------->ALFIN1                                                         ---------->DOF2                 <------NtERF2                                                  <---------GLK1(1)                      --------->ATERF1(1)                                                  --------->GLK1(1)                      ------>NtERF2                                                 <---------ARR14(2)                     <---------RAP2.3(1)                                                 <---------GLK1(2)                     <---------DEAR3(1)                                              --------->RAP2.6(2)    ------>ZmHOX2a(2) <---------RAP2.3(2)                                             <---------LBD16     ----------->HVH21     <---------RAP2.3(3)                                            --------->ZAT2      <---------MYB52(1)     <---------RAP2.6(2)                                            --------->At4g35610--------->LBD16         <---------RRTF1(3)                                       --------->DAG2 <---------ANAC58--------->HSFB2a(2)<---------At4g35610 ---------GLK1(2)                     ---------->DOF2 <---------ANAC58<---------HSFB2a(2)<---------LBD16 ----->DOF2                      ----------->GT1 --------->ARR14(2)--------->ARR11(3)  <---------RRTF1(2) -->GT1                          <---------ZAT6--------->LBD16<---------DEAR3(1)      <---------LBD16   aagatgctcaaatcccacaagtggtttacgaattagagtgaaaagcagccggatttgcttaaagccggtgatctgggagacagaagaatgcggcggagct  3148200                     --------->MYB52(1)                    <---------WRKY38(1)                    <---------WRKY12                <---------MYB46(3)               <---------ANAC46              --------->ATERF1(1)            <---------ANAC46            --------->ALFIN1            <---------DEAR3(1)           <---------At4g35610           ------>NtERF2          <---------ANAC46          <---------RAP2.3(1)          <---------ATERF1(1)         <---------DEAR3(1) -->ZAT2 <---------RAP2.3(2)                        <---------At4g35610 ---ZAT2--------->SPL7                              --------->ZAT2                                  < ---At4g35610 <------NtERF2                         <---------ZAT2                                  - -->At4g35610<---------SPL7                         --------->At4g35610                            -- --ARR14(2)<------NtERF2                          <-----------RAV1(2)                    ------>NtERF2 ->ARR14(2)<---------LBD16  ---------->DOF2   --------->At4g35610          <---------AtMYB61   ------ >ATERF1(1)--------->ATERF1(1)                <---------At4g35610      <------ZmHOX2a(1)--------->DEAR3(1)   ggacaactcgtgcggcggagggtgaacggagaaagaaccctagaaggcagaagcagctgagtagtagtaagtaggagatggtcgaaaacgacgacgtttg  3148300          =====================================HOX2a_HOX2a          <------ZmHOX2a(2) ------NtERF2 -------->RAP2.3(1)                                                      <----------DOF2 ---->NtERF2                                   <------ZmHOX2a(1) <----------DOF2 <----------DOF2   <- ----->HVH21     <---------ZAT6         <------ZmHOX2a(1)     <-----------GT1   *TSS         <-------   acgccgaaatcgatccctagagctaaaatcgcagagaagagaggaatcaggaaacttgtgtttttttcttttgtgctttcaaactttaagatgggctttc  3148400                                       <-----------GT1                                      <-----------GT1                                     <---------AHL20(2)                                  --------->AHL20(1)                                 --------->AHL20(2)                                 <---------AHL20(2)                                 --------->YAB1                                 --------->ATHB51                                 <--------HAHB4                                 -------->ATHB1                                 ----------->GT1                                 <---------ICU4                            <---------AHL20(2)                                <---------ATHB12                    <---------AHL20(2)                                --------->ICU4                     --------->AHL20(2)             ---                                <---------ATHB51                 --------->ARR11(3)             -----   <----------DOF2          ------------>CBF                     <---------ARR11(3)             ----- ---------DOF2          <---------ALFIN1 --------->YAB1      ---------->DOF2 <---------AtLEC2   <---- ---DOF2          --------------->AtSPL8<---------YAB1--------->TOE2(3) <---------ICU4<----------ID1   actttctttcttctccatattttgttccacttcaattattttatcattttgtttcacctaaaaaaaagatttaatatttacatggaaaaaaacaaaaact  3148500          --------->GLK1(2)                --------->AHL20(2)          <---------ARR11(3)               <---------AHL20(2)          --------->ARR11(3)          <---------YAB1         --------->RVE1(1)         <---------AHL20(2)    <---------AHL20(2)             <---------YAB1                                            --------    --------->AHL20(2)        <---------RVE1(1)              <-----------GT1             --------->GLK1(2)   --------->AHL20(2)         <---------CCA1(1)          --------->TOE2(3)               --------->ARR14(2) ------>AHL20(2)             --------->ARR11(3)         --------->YAB1                   <---------ARR14(2) ---->TOE2(3)                <---------ARR11(3) --------->AHL20(2)   ----------->GT1    <---------GLK1(2) ---->TOE1(3)           ----------->GT1 --------->YAB1  <---------ICU4          ----------->RAV1(1) ------DOF2    <---------TOE2(3)  <---------AHL20(2)--------->AHL20(2)         --------->ANAC46   ttaaatttaaaaaatctaagaatgtatagtagatatttttattaataaaactaaataaacattatactacatggtattaatacaccagaagaatctggtg  3148600                                                                              <----------DOF2                                                                             <---------ANAC58                              --------->ANAC58<---------DAG2         >>>>>>>>>>>>>>>>>LFY                              --------->ANAC58<----------DOF2    <---------GLK1(1)                <----------DOF2   ---------->DOF2                --------->GLK1(1)    --------->ANAC58               <---------ANAC58 ----------------->AGL2         <------ZmHOX2a(1)      --------->ANAC58               <---------ANAC58 ----------------->AGL1 ===============HOX2a_HOX2a <-----------GT1   - --->GT1  <---------ICU4  <---------ZAT6----------->GT1<------ZmHOX2a(2)     <---------ANAC58    ----   aaaacttgaaaaacattgctttcaagtagtgtaagccaaagatggaaacttttttagatcaaataggatttctccaatggcttttcactcgctatcttcc  3148700                                                 --------->ANAC58                    <---------GLK1(2)                                                 --------->ANAC58                    --------->ARR14(2)                                            --------->ALFIN1                --------->YAB1        ---                                           <------ZmHOX2a(1)               <-------TEIL        <-----                                      <---------HSFB2a(2)            <---------At4g35610<-----------GT1 ----->ZmHOX2a(1)                 ------>ZmHOX2a(1)                  ------>ZmHOX2a(1) <-------TEIL -->ZmHOX2a(1)           <-------TEIL --------->HSFB2a(2)         ------>ZmHOX2a(1)  <---------ARR14(2)   tcctcactgtcttctaatttgatatggttcatgttcctctctagaggagggaggccatcttcatcatcctcctctgattcatcaccagattcaccatctt  3148800                                                           <------MYB83                                                           <------MYB46(1)                                                           <---------ANAC46                                                           <---------ANAC55(2)                                                          --------->MYB111(1)                                 --------->ANAC58         --------->MYB59                                 --------->ANAC58         --------->MYB46(2)                               <------ZmHOX2a(1)        <---------MYB52(1)                          --------->MYB52(1)          <---------YAB1                    --------->ANAC58             <---------At4g35610                               <-             <---------------AGL15               --------->At4g35610                              <-- ------>TOE2(3)     --------->ANAC58        <---------GLK1(1)          ----------->HVH21        ----- -----DOF2  ----------------->AGL2          --------->GLK1(1)     ----------->GT1       ---------->DOF2   tcttaacatctaaacccaaaacaagaaataacaggaagcaagtgagatttcagcttatgttaggtatgtggtaatgacagagagattagaaaaagatgtg  3148900  Previous    Next  AGI:  At5g10060.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65180.1); similar to 4D11_9 [Brassica rapa subsp. pekinensis] (GB:AAZ67523.1); contains InterPro domain ENTH/VHS (InterPro:IPR008942); contains InterPro domain Protein of unknown function DUF618 (InterPro:IPR006903); contains InterPro domain Regulation of nuclear pre-mRNA protein (InterPro:IPR006569) Range:  from: 3145750    to: 3148380    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g10070.1    Description:  RNase L inhibitor protein-related. similar to 80A08_4 [Brassica rapa subsp. pekinensis] (GB:AAZ67589.1); contains InterPro domain Possible metal-binding region in RNase L inhibitor, RLI (InterPro:IPR007209); contains InterPro domain Protein of unknown function DUF367 (InterPro:IPR007177) Range:  from: 3148523    to: 3150435    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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