Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------At4g35610                   --------------------->WRI1                ----------->RAV1(1)                <<<<<<<<<<<<<<<<<LFY             <------ZmHOX2a(2)             --------->CCA1(2)     ------>NtERF2                        --------->DAG2        -------            <---------ARR11(3)     <------NtERF2                      ---------->DOF2         -------            --------->ARR11(3)  --------->At4g35610     --------->At4g35610                 ---------            --------->ARR14(2)  <---------LBD16<---------YAB1      --------->MYB46(3)    <------NtERF2            <---------ARR14(2)<---------DEAR3(1)        <---------At4g35610          ------->GAMYB        <------ZmHOX2a(1) <-------TEIL        --------->YAB1 ------->TEIL         --------->MYB52(1) -------At4g35610------------>CBF ----------->HVH21   <-----------RAV1(2)----------->GT1-------------   aactgatataggaagatccaacaatggattcatcggcggacatagcaatattagtggcagatgaatgtaaccaaaaggtgaatacaacggcagagaaagc  3143800                       <---------MYB46(3)                      <--------P                     <-------GAMYB                    <------MYB46(1)                    <---------MYB46(3)                    <------MYB83                    --------->MYB55(2)                   <---------AtMYB61                   --------->ALFIN1                 <------MYB83                 <---------ANAC46                 <---------ANAC58                 <------MYB46(1)                 <---------ANAC58                <------MYB83                --------->MYB55(2)                <---------MYB46(3)                --------->MYB111(1)                <------MYB46(1)                                                                    --              --------->ALFIN1                                                                    ---             <-------GAMYB                                                                        ---            <---------MYB46(3)                                                                    <--       <---------At4g35610                                                                      <----       --------->At4g35610                                           <------ZmHOX2a(1)        ------- -->ANAC58  --------->MYB55(2)                                      ----------->GT1           <------ -->ANAC58 <---------AtMYB61  --------->ATHB12          ---------->DOF2                     <-------- ->DOF2<---------LBD16<---------WOX13(1) <---------TOE2(3)     <---------At4g35610          --------- -------->WRI1<--------P     <---------YAB1<------ZmHOX2a(1)   --------->At4g35610         <---------MYB52(1)   atcgaatacagcggaggttgggtggttgatgatgtttgggattgaggagaagaagattgaaagtctgatgaggaaatttgaagctaaatctcagtttgct  3143900    <XXXXXXXXXXXXXXXXXXXXMIR841B    <---------ARR14(2)   <-------GAMYB  <---------MYB46(3)  <---------DEAR3(2) <---------ANAC58 <---------DEAR3(1) <---------ANAC46 <---------RAP2.6(2) <---------ANAC58 ---------->AtMYB77 -------->HVH21                                                 ------->TEIL ------>ALFIN1         --------->At4g35610                     <-----------GT1 -------DEAR3(1)       <---------At4g35610               <---------TGA1a -------RAV1(1)    <-----------GT1                       --------->TGA1a                    --------- -->At4g35610  <----------DOF2                           <---------ANAC55(2)  --------->ARR11(3) ---At4g35610 <---------ANAC58                           <---------O2         --------->GLK1(2) -ZAT14       <---------ANAC46                           --------->O2        <---------GLK1(1)    <-- >ZAT14       <---------ANAC58  <---------YAB1      --------->ANAC46         --------->GLK1(1) ------   gtggcggtttctagtggcttttttctgcttaactatgtttcatccttgtactataagtcacgtttgaacctcatgctggaaatctagtttaggcatgatg  3144000                                                                       <-----------GT1              <                                               <---------ANAC46<---------AtMYB61     --------->MYB52(2)                                      <----------DOF2        <----------DOF2       <--------P   <---- <----------DOF2   <---------ATHB12  <---------ANAC58     --------->ANAC58         <---------MYB52(1) >ICU4    <---------ANAC58           <---------ANAC46     --------->ANAC58  <----------DOF2 <-------- ---------GT1      --------->MYB46(3)<---------ANAC58 --------->HSFB2a(2) <---------------AGL15 ----- ----->GT1<---------ANAC58      <-----------RAV1(1)   <---------HSFB2a(2) --------------->AGL15 <----   ttactttcatttgcttctctaatcaccagagggcatgttgctttaagtttcgagttctacaagctttggttttatactcttttgggttagtttttaagta  3144100   <---------ANAC46   <---------ANAC58   <---------ANAC58               ----------->GT1                                 --------->AHL20(2) ---------GLK1(2)          <---------ANAC46                                       <---------AHL20(2) -----ZAT14                <---------ANAC58                                   --------->AHL20(2)    < -------AtSPL8             <---------ANAC58            --------->ICU4         --------->ICU4        < ---->ZAT14               <------NtERF2        --------->YAB1             <-------TEIL              < ---TEIL                --------->ALFIN1      <---------ATHB12         --------->At4g35610      <----   cagtttcttgtaagttaatggaaacggtgtcgtagtaagaaaaaacaaatcatcgtagtaattaagcctaatccgatgcattaattaatctctgaaattt  3144200                                                                                      <-----------GT1                                                                                  <---------YAB1                                                                                  --------------->AGL15                                                                                 <-----------------AGL2                                                                                 ----------------->AGL3                                                                             --------->ABI4(2)                                                                             <---------MYB46(3)                                                                             --------->MYB55(2)                                            --------->ZAT6                  <---------AtMYB61      <-                                           --------->GLK1(1)                --------->ALFIN1  -------                                       --------->ANAC58                 <---------LBD16 <---------ANAC55(2)                                       --------->ANAC58                 --------->ZAT18 <---------ANAC46 *TSS                                  --------->ANAC46               --------->GLK1(2)<---------LBD16 ------MYB83                           --------->ANAC55(1)            <---------ARR14(2)--------->ANAC55(2) ------MYB46(1)                       <---------LBD16         <---------ANAC46   <-----------------AGL3 ---------MYB46(3)        <-----------RAV1(1)              --------->ALFIN1<---------MYB52(1)<------- -------RAV1(1) --------->AHL20(2)    --------->LBD16    --------->ALFIN1 --------->LBD16    --------   gttggtttgcacaaaaaaaaaaattccattgttgttgttccacggaactctaaaatggagagtggcgatgagagtccggtggttctaattacgggatgtt  3144300                                                                                            =========                                                                                           <------ZmHOX2a(2)                                                               <---------O2               ------->TEIL                                                               --------->O2               --------->GLK1(2)                                                              <------NtERF2               --------->ARR14(2)                            <---------MYB52(1)               ------>NtERF2             <---------ANAC55(2)                           --------->LBD16                  ----------->HVH21          --------->ANAC55(2)                           <-----------HVH21                <---------ANAC46         --------->MYB52(1)                      ------>NtERF2                        <------NtERF2            ----------->TGA1                    <----------CDC5                        --------->ATERF1(1)      ----------->HVH21                    ================MYC_MYB               <---------ATERF1(1)    <---------TOE1(1)                    --------->ATERF1(1)                  <---------DEAR3(1)      <---------TOE2(1)                --------->ANAC55(2)                      <---------ANAC46       --------->SPL7       <---------ARR14(2) --------->TGA1a                --------->ALFIN1     <---------SPL7------>ZmHOX2a(2)      <------ZmHOX2a(1)   <---------TGA1a              <---------MYB46(3) --------->ANAC46<---------AGP1 --------LBD16  <---------ANAC55(2)                   <---------AtMYB61   <---------ANAC55(2) -->KAN4(2)     --------->ANAC58 <---------ZAT14      --------->ALFIN1    --------->ANAC55(2)       - --HSFB2a(1)    --------->ANAC58 --------->ZAT18    <---------ANAC46     <---------LBD16  --------->ARR11(3) ->HSFB2a(1)<-----------HVH21    --------->ZAT14  <---------ANAC46     <------ZmHOX2a(2)  <---------ARR14(2)   ctcagggaggaattggtcacgcgctggcccgtgagttcactgagaagggatgtcgagtggtggcgacgagtcgatcacggagtacgatgacggatctgga  3144400            --------->KAN4(2)       <---------TOE2(3)    <-------TEIL                                                     <---------MYB46(3)     <------ZmHOX2a(2)   --------->ARR14(1)                                               <---------TOE2(2)      --------->ARR11(3)   --------->CCA1(2)                                                <---------TOE1(2)----------->GT1  <---------ARR14(2)                                               <------NtERF2     <------MYB83  <---------GLK1(2)                                              --------->ETT(1)    <------MYB46(1)  --------->ARR11(1)                                          <-----------RAV1(1)    <---------HSFB2a(2)  --------->ARR14(2)      <----------DOF2               <---------TOE2(3)           --------->MYB59 - ============================HOX2a_HOX2a                --------->MYB59     --------->YAB1 <---------ARR11(3) ---------->ARR10     <------ZmHOX2a(1)       <---------GLK1(2)<-----------HVH21    --------->MYB46(2)   gcaagattcgaggttattcgtgaaggagcttgatgtgcaatcggaccagaatgtgagtaaggttttgtcggaggttattgataagttcggtaagatcgac  3144500                           <-------GAMYB                          <---------ANAC58           <---------ARR14(2)                      <---------ANAC58               --------->ARR14(2)                      <---------ANAC58      <---------ATERF1(1)                    --------->ZAT14        <---------ARR14(2)                    <---------ZAT14        --------->ARR14(2)                    --------->ZAT18       <------NtERF2                  --------->GLK1(1)      --------->LBD16                                            -                <------NtERF2           <---------ANAC46 --------->LBD16                        -----               --------->LBD16         <---------LBD16   ------>NtERF2                          -----             <---------LBD16         <-----------RAV1(1)--------->ANAC46                       ------  ----------->GT1 <---------GLK1(1)  ----------->HVH21 <---------LBD16                    ----------- -------------------->WRI1<---------ANAC58--------->ATERF1(1)--------->AtLEC2      <---------ATHB12 <   gttcttgttaataacgccggagttcagtgcgttggacctctggcggagactccaatttccgccatggaaaacacattcaacaccaatgtttttggtaata  3144600                             <---------AHL20(2)                             --------->ATHB12                       <-----------GT1                    --------->YAB1 --------->CCA1(2)  -------->ATHB1                                       --------->ATHB12 -------->ARR11(1)  <--------HAHB4                                       -------->ATHB1 ----->DOF2         <---------ICU4            <---------ARR14(2)         <---------ICU4 ---->YAB1          --------->ATHB51          --------->ARR14(2)        <---------ATHB12 --->ICU4          <---------ATHB12     --------->REM1(1)       <---------YAB1 >GT1              <---------ATHB51 --------->At4g35610     <---------ANAC58           --------->ANAC46 ---------ARR11(3) --------->ICU4   <---------At4g35610     <---------ANAC58       <-----------GT1   aagatttgatttttagtttcaattattacatttattggagcttcaacagttctggtttttttgcttattagtgaatcattggaatttacaatccatttca  3144700  Previous    Next  AGI:  At5g10040.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65207.1); similar to 80A08_3 [Brassica rapa subsp. pekinensis] (GB:AAZ67588.1) Range:  from: 3143724    to: 3144158    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g10050.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G65205.1); similar to 117M18_6 [Brassica rapa] (GB:AAZ66925.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 3144201    to: 3145731    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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