Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        ----------->GT1                   --------->CCA1(2)                  <---------ARR14(2)                  --------->ARR14(2)                  --------->ARR11(1)                  --------->ARR11(3)                  <---------ARR11(3)                ----------->ARR10             <---------ANAC58                                      -           <-------TEIL                       <---------ANAC58                                      <         --------->ARR14(2)            <----------DOF2                                       --------         <---------ARR14(2)      ----------------------->TaNAC69(2)                          <-------         <---------GLK1(2)       <---------MYB52(1)                                        --------->At4g35610        <------ZmHOX2a(1)        --------->ALFIN1                                          ----------      <---------TOE2(3)       <---------TOE2(3)                       <---------MYB46(3)   <---------At4g35610      <---------TOE1(3)      --------->MYB52(1)<-----------TGA1 <---------MYB46(3)<----------DOF2   -   ggcccattaaggattcgtaagatatgggaaataacgttgggctttatttcgtcaccatgggtttagttgttgttgttgagttgtctttttcgcatctgga  3127500                                                                                           --------->ARR11(3)                                                                                           <---------ARR11(3)                                                                                           --------->ARR14(2)                                                                                          --------->CCA1(1)                                                                                          --------->RVE1(1)                                                    <---------ICU4                     <---------AHL20(2)                                                    --------->YAB1                    --------->AHL20(2)                                                    -------->ATHB1--------->TOE2(3)   <---------AHL20(2) -------->ARR11(3)                                 <---------AHL20(2)              <---------AHL20(2) ---------ARR14(2)                  <---------AHL20(2) <---------AHL20(2)         --------->AHL20(2) ->HSFB2a(2)                       --------->AHL20(2) <---------YAB1              <---------AHL20(2) --HSFB2a(2)                   --------->ICU4      --------->ICU4 --------->ANAC55(2) --------->AHL20(1) ->RAV1(2)     ------->TEIL  ---------->DOF2       --------->AHL20(2)         <---------AHL20(2) -------->ARR14(2)           --------->YAB1        <---------ATHB51          --------->AHL20(2)     -   cggatattgtccgtatgaatttcttagactataaagattaaatgtaatttcaaattattatttgatatacttaattcaattttataaatttaatatcttc  3127600                                                                                       <---------ANAC46                                                                              --------------->AGL15                                                                              <---------------AGL15                                   --------->ANAC58                          ----------------->AGL2                                   --------->ANAC58                          <-----------------AGL2           --------->ZAT18       ---------->DOF2                             ----------------->AGL3 --------->DAG2                <---------YAB1                       <-----------GT1    <---------ANAC58 --------->DOF2   --------->AHL20(2)                             --------->YAB1        <---------ANAC58   aaaaaagtttgtgtccacaatataacaaatgttatcaaagcaaaaaaaaaaaaaaaaacttcttctaatataacaaatttccctaaatagcttgcaaatt  3127700                                                   <---------YAB1  --------->AHL20(2)                --------->ICU4                     <---------AHL20(2)                --------->ARR11(3)             --------->YAB1      --------->AHL20(1)                <---------ARR11(3)      <---------AHL20(1)         <---------AHL20(2)                --------->AHL20(1)      --------->AHL20(1)         <---------AHL20(1)                <---------AHL20(1) --------->AHL20(1)           <---------ICU4           ----------->GT1         <---------AHL20(1)          --------->AHL20(2)           <---------YAB1    ----------->GT1  <---------YAB1   <---------AHL20(2)        --------->ICU4       <---------YAB1 --------->YAB1     <---------ATHB51      --------->YAB1      --------->ICU4<---------AHL20(2)     --------->ICU4      <---------ICU4    <---------ICU4  --------->AHL20(2)   --------->YAB1                ------->TEIL     --------->ICU4     --------->YAB1 --------->AHL20(2)  --------->AHL20(2)---------->DOF2   atctgtaaacatgatgaaaatattaaacatgatgaaaaatattaaattatcatattattcaaaaaataattaattagccaaaagctatatatgaattttg  3127800                                  --------->AHL20(1)                           <------NtERF2                         <---------DEAR3(1)                        --------->RAP2.3(1)                       <---------RAP2.3(1)                       <---------DEAR4(2)                                                           -                       <---------ATERF1(1)                                                      -----           <---------ARR11(3)     --------->AHL20(2)                                           ------           <---------ICU4--------->DEAR3(1)                                                    ------           --------->ARR11(3)     <---------AHL20(2)                                           ------           <---------AHL20(1)    <---------AHL20(2)                                  <-------GAMYB  <           --------->AHL20(1)    --------->AHL20(2)                            <---------ZAT18 ------        --------->AHL20(2)------>NtERF2                                <---------AtLEC2        <-----        --------->YAB1--------->ANAC46    ----------->GT1          <----------DOF2  <---------MYB46(3)     --------->YAB1 --------->MYB52(1) <---------LBD16          <-----------GT1--------->ZAT18 ------   ggccttacaataatattttcgcaaacggcgcctaaataatttgggggaaaaaatcaaaaaccctatttccttttcatgaagagcgctcgttgaaatcacg  3127900                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                 ----       *TSS                                                                                     ----- -------->ICU4                                                                    --------->AHL20(2)< ------->CBF                               --------->AHL20(2)               ----------->GT1     <---- --->ANAC58                           <---------AHL20(2)                    --------->LBD16     <---- --->ANAC46                           --------->AHL20(2)                   --------->HSFB2a(2)  ----- --->ANAC55(1)                   --------->AHL20(2)                        <---------HSFB2a(2) <----- ---------ATHB12              ----------->GT1                             <---------LBD16    <------- --->ANAC55(2)               ----------->GT1                             ============================ ----ANAC55(2)             ---------->DOF2--------->AHL20(2)             ------>ZmHOX2a(1)   -------- --->ANAC58           ---------->DOF2 --------->AHL20(1) --------->LBD16 ============================   caataagtagaacacatttggacaaaaagaaaagataaaataaaataaaaaacaaaacccccaaatttgtgtctcctccggaaaaaaaattcgaaattcc  3128000      ------>NtERF2     --------->ANAC46     --------->RAP2.6(2)     --------->DEAR3(1)     ------->GAMYB     --------->DREB2C(2)    --------->MYB46(3)   <---------At5g28300  <---------ALFIN1 ------>ZmHOX2a(2) <---------ABI4(2) --------->MYB46(3) ------->ARR14(2) --------TCP16(1) --------ARR14(2)                                    <---------ARR14(2) --------TCP20                                   --------->RAP2.3(1) ----->LBD16                                     <------NtERF2 ---->ANAC55(2)                                 ------>NtERF2                           <-----------RAV1(1) ------ZmHOX2a(2)                               --------->LBD16                       --------->ZAT14 -----ANAC55(2)                                 <---------ATERF1(1)                 --------->ZAT14 -----HSFB2a(2)                                --------->DEAR3(1)                   <---------ZAT14 ---->HSFB2a(2)                                <---------ATERF1(2)            <---------MYB46(3) ----LBD16                                     --------->ATERF1(2)            <------MYB83 --ARR14(2) --------->WOX13(1)                <---------LBD16   <--------P    <------MYB46(1) =======HOX2a_HOX2a                           --------->ATERF1(1)            <---------AtMYB61  ----- ->GLK1(2)<---------ATHB12      <----------DOF2<---------DEAR3(1) --------->At4g35610 <---------ZAT14 ======HOX2a_HOX2a    <----------DOF2 <---------CCA1(2)        <-------GAMYB<---------MYB52(1)  <----   ggatccaccgccatcaatccctagctttctctctctttctctatcttcgccggcgaaaccagtagggttgctcaattcgttggtagagtactgtggcaat  3128100                                                        --------->ARR14(2)                                                      --------->LBD16                                                     <---------ANAC58                                                     <---------ANAC58                                                     <---------ANAC46                                                    <---------LBD16                                                 <-------GAMYB                                                <-----------RAV1(1)                                                <---------MYB46(3)                                              <---------At4g35610                                              --------->At4g35610                     <----------ID1 ---------->DOF2            ---------->DOF2<---------ZAT2                            --------->ATERF1(1) ---->ICU4           --------->ALFIN1      <---------At4g35610                    <------ZmHOX2a(1) -----ATHB12   ---------->DOF2          ---------->DOF2 <---------ARR14(2)----------->HVH21         <   gaagaaaggagcgaagagaaagggtgtttcgaaagcaggtcgcaaagctgctgttgcggagactcagaacgatgaggtgatagaggagacgacgaagacg  3128200                                                                                ==============HOX2a_HOX2a                ------->GAMYB              ----------->HVH21                    <------ZmHOX2a(2)              --------->At4g35610          <---------REM1(1)                    =====================            <---------WRKY38(1)    <---------DEAR3(1)                          --------->ARR11(3)<---            <---------WRKY12       --------->DEAR3(1)                         --------->GLK1(1)  ----      <------ZmHOX2a(1)           --------->ATERF1(1)                   --------->MYB52(1)      <----   <------ZmHOX2a(1)              <------NtERF2 <------ZmHOX2a(1) <------ZmHOX2a(1)    <------ZmHOX2a(1) -----------RAV1(2)     <------ZmHOX2a(1)  --------->ALFIN1       =====================HOX2a_HOX2a   acgcaggaggagagtcaacagcatgaggaagaagtcgtcgacgaggtgaaggagaatggggaagaagaggaggctaagggagatcaagaggaagaagagg  3128300                                                           <------ZmHOX2a(1)                                                     <---------At4g35610                                                     <---------ZAT2                                                     --------->ZAT2                                                     --------->At4g35610                                                 <---------WRKY12     ----------->RAV1(2)                         <---------WRKY38(1)   --------->ARR14(2)                            <---------WRKY45   <---------ARR14(2)        <------ZmHOX2a(1) <-----------HVH21                                    - ==HOX2a_HOX2a------>ZmHOX2a(1)          --------->At4g35610    ---------->DOF2                   <-- ------ARR14(2)        <------ZmHOX2a(1) <---------At4g35610    --------->MYB52(1)           <------- ----->ARR14(2)     <------ZmHOX2a(1) <------ZmHOX2a(1)  <---------TOE2(3)                   <------- --ZmHOX2a(1)--------->TOE2(3)   --------->GLK1(2)---------->DOF2 <---------TOE2(3)     <-----------RAV1(1)   atgcgaaacctgattccttagaggaggatgaggagaatcaggaagatgaggtcaaagctgaggaagtaaaggaagaagttgagaagaaacctgttgctcg  3128400  Previous    Next  AGI:  At5g10010.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64910.1); similar to 117M18_4 [Brassica rapa] (GB:AAZ66923.1) Range:  from: 3127907    to: 3131728    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version