Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->ATHB12                                        <---------YAB1                                       <----------DOF2                                       <---------------AGL15                                       --------------->AGL15                                      ------>ZmHOX2a(2)                                          ----                                     <---------RVE1(1)                                          -----                                     <------ZmHOX2a(2)                                          -----         <---------WOX13(1)         --------->AGP1                                         --------->ANAC46       --------->ATHB12             <---------AGP1                                         --------->ANAC58      --------->ICU4                <---------ARR14(2)                                     --------->ANAC58      <---------YAB1                <---------ARR11(3)                                 --------->ANAC58    --------->YAB1                  --------->ARR11(3)                                 --------->AtLEC2   --------->ICU4                   --------->ARR14(3)                                 --------->ANAC46   <---------YAB1                   <---------ARR14(3)                                 --------->ANAC58 --------->YAB1                     --------->ARR14(2)          --------->TOE1(3)     <---------LBD16 <---------ICU4             --------->DAG2                      --------->TOE2(3)  -------->P   ----- -------->ICU4             ---------->DOF2                      <---------MYB59 <---------ANAC58<---- ---------ATHB12 ---------->DOF2   <---------CCA1(2)      --------->YAB1        <---------ANAC58-----   ccatgatgatgattgtttacaaagtgacataaagtccagatctttattgagcaatttgaatcaaaacctaaatccaagagaggcttaccacgcaagcgac  3126000                                                                 --------->ANAC46                                                                 --------->ANAC58                                                                 --------->ANAC58                   - -->NtERF2                                                      <---------LBD16                   <-- ---->ANAC58                                                   <---------ALFIN1                   --- ---->bZIP60(2)       <---------ANAC46                      --------->PCF2 <---------YAB1============ ---->ANAC58       <----------DOF2                         <-----------HVH21--------->ATHB12      --- -----bZIP60(1)   <---------ANAC58                   <------ZmHOX2a(1)  ----------->GT1  ============ ---->bZIP60(1)   <---------ANAC58                 --------->ALFIN1 --------->SPL7       <------ZmHOX2a(2)   gacattgagcaagacgaagtgcttctgtgtgaatgtccattgagagagttggagaggaggctgtcccacggacgatgttaattgggaagagatcgatggc  3126100                                                                                                    -                                                                                                 <---             <---------ZAT14                                                                    =====         <---------------AtSPL8                                                                 -----     --------->ARR14(2)                                                                         <----     <---------ARR14(2)                                                                         =====    <------ZmHOX2a(1)                                          --------->YAB1                   ----- ----->ZmHOX2a(1)                                              ----------->GT1                  <---- -------At4g35610                                           --------->WOX13(1)                 ------ ------>At4g35610                                          <---------WRKY38(1)             ---------- ==========HOX2a_HOX2a                                    --------->WRKY18(1)         <------NtERF2<- -------->RAV1(2) --------->ZAT14                     <---------MYB52(1)             --------->LBD16< ======HOX2a_HOX2a<---------ZAT14                 ------->TEIL<---------ATHB12     <---------LBD16 <-   tcctgaggattcgagtacaatgcagagggagtagaagatgcgattgagtctgaacccttggtcaatcgtgaaatcggtgaagctagccggagagtgaccc  3126200    ---------->DOF2 <------NtERF2 ----->NtERF2 --------HVH21 =======================================MYC_MYB ---->O2                   --------->ARR14(2) -----O2      <---------RVE1(1) ==============bZIP_DOF    ------->TEIL ---->TGA1a  <---------ARR11(3)               --------->ARR14(2) -----TGA1a  --------->ARR11(3)          --------->GLK1(2)               <---------WOX13(1) --->MYB46(3)<---------GLK1(2)           <---------ARR14(2)            --------->ATHB12 ->HVH21    <---------RVE1(1)            --------->ARR14(2)            <---------MYB46(3) --------DEAR3(1)<---------YAB1 <---------MYB52(1)                  <---------ANAC46 ---------DEAR3(2)         ------------>MYB.PH3(1)                  <---------ANAC58        --------- --------At1g77200         <---------ARR14(2) <---------ARR14(2)    <---------ANAC58   <-------------   gtcggcgaaaggagagatttttatcgatgaatccgttatggagaatcggattccaagagattagagattggggtgattgcaatttcgaaggcgagaataa  3126300                                                                                <------NtERF2                                                                                --------->At4g35610                                                                               *TSS                                                                            <-----------HVH21<-------                                                                        <---------MYB52(1)   <-------                                                                       <-------GAMYB    <---------ARR14(2)  <---------YAB1                                                  <---------GLK1(1)     --------->ARR14(2) >YAB1                                                            --------->GLK1(1)----------->GT1 --------WRI1          <-----------HVH21<---------TOE1(3)--------->YAB1<---------At4g35610   <-------   cattgtgaatggttttagctctattcgtcagaaaccattgttaagcttcgagtcgacgataacaatggatttcagttgtgtcagcgagaaaatttgcgtc  3126400                         --------->DAG2                        ---------->DOF2                                 --------->YAB1                     --------->ANAC58                     <-----------GT1                         <--                     --------->ANAC46      --------->DOF5.7(2)          --------->ATHB12          <-- --ANAC46            --------->ANAC58      <---------MYB52(1)------->GAMYB       <---------AHL20(2)<- --ANAC58   --------->YAB1     ------>ZmHOX2a(1) <------------CBF      <---------YAB1         <------ --ANAC58 ------------>CBF   --------->ZAT18 <---------DOF5.7(2)    <---------YAB1     <-----------GT1   aagtttagaaacaacaatatttcacgaaaagtcctctgtttatgcgttaactattgaaaataaccccattactatcatttgagttaatttgaccttcttt  3126500                                                                                        <-------PIF4                                                                                        <-------MYC4                                                                                        ------->MYC2                                                                                        <-------PIF5                                                                                        <-------MYC2                                                                                        ------->PIF4                                                                                        ------->MYC3                                                                                        <-------MYC3                                                                                        ------->PIF5                                                                                        ------->MYC4                                                                                       <---------TGA1a                                                                              ------>MYB83                                                                              ------>MYB46(1)                                                                            <---------ALFIN1                                                                    <---------O2       --------->O2                                                                    --------->ANAC58   <---------O2                                                                    --------->ANAC46  ------->TEIL                                                     --------->ANAC46       --------->AtMYB61                                                     --------->ANAC58      --------->At4g35610   --------->At4g35610        <---------MYB46(3)     --------->ANAC58    <---------ALFIN1 <---------- -------ANAC58          ----------->RAV1(1)    --------->At4g35610  --------->ANAC55(2)--------->ANAC55(2) -------ANAC58          <---------ALFIN1       <---------At4g35610  --------->ANAC58 <------------OsbHLH66 ----------HVH21     --------->AtMYB61       <---------ZAT18        --------->ANAC55(1)--------->TGA1a ----DOF2            <---------ALFIN1        --------->ZAT18 <-----------GT1--------->DEAR3(1)<------   gcgtcatatgcaaaatcggaacaccaccacattggtttggaggtttgtgagctacaagcctataaactacacgtagcacctccctatgcacgtgtcacat  3126600                                                                                                    -                                                                                                    <            --------->ALFIN1                                                                      ---        <---------TOE2(3)                            <<<<<<<<<<MYB80                      --------->ANAC58 --------->ATHB12     <---------YAB1                <------MYB83                          --------->ANAC58 -HVH21 <---------TOE1(3)                           <------MYB46(1)               <-------TEIL------- ---ANAC55(2)    <---------At4g35610          <-------TEIL            <-----------GT1   ---------->DOF2   gaatgattttaagggtttgggctgatgtttgagctataactacatatatacatttggtttgattcgtttttcttacattatagtttcatcaaaagccaaa  3126700           <------ZmHOX2a(2)       <---------WOX13(1)   <---------WOX13(1)  <------------CBF                                                        --------->ANAC58 --------->ATHB12                                                     --------->YAB1 --------->ATHB51                                                  --------->AtMYB61 -------->ICU4                     --------->YAB1               <-----------GT1 ---------YAB1             ------>ZmHOX2a(1)                  <---------ARR11(3)   --------->MYB52(1) ------>YAB1     --------->ZAT18--------->REM1(1)             --------->ARR11(3) <---------MYB52(2) --->DOF2  =======================HOX2a_HOX2a        --------->ARR11(3)   --------->ANAC58   gcataattgatggatcaagtactctactcctcttacatcataaaaatccctgtaatatcacgaatatcaccatcacaagctcaacttacgaccaggctca  3126800                                                                                                  <--                                                                                              -------                                              <------MYB46(1)                               <------MYB83                                              <------MYB83            ----------->GT1       <------MYB46(1)                <---------ANAC46     --------->ICU4                  --------->DAG2      <---------MYB52(1)                <---------ANAC58--------->ANAC58                    ---------->DOF2     --------->LBD16   --------->ANAC58         <---------HSFB2a(2)             <---------GLK1(2)          <---------HSFB2a(2)   --------->ANAC46         --------->HSFB2a(2)         ---------->DOF2        --------->ATHB12 -----   --------->ANAC58        --------->ETT(2)  <---------AtMYB61   <---------ANAC55(2)   --------->HSFB2a(2) --------->ZAT6 <---------ANAC58--------->ANAC58--------->ALFIN1 <---------ANAC46     <---------LBD16   ataacacgacttattttggcttgtcatcgtcgagaggcaattttgggaaggtgtttgcaaaagagtctcgtaaagtgaaactgattagtccggaaggtga  3126900  Previous    Next  AGI:  At5g09995.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08530.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81396.1) Range:  from: 3125039    to: 3126379    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g10000.1    Description:  ATFD4 (FERREDOXIN 4); electron carrier. similar to ATFD3 (FERREDOXIN 3), electron carrier [Arabidopsis thaliana] (TAIR:AT2G27510.1); similar to unknown [Populus trichocarpa] (GB:ABK95610.1); contains InterPro domain 2Fe-2S ferredoxin, iron-sulphur binding site; (InterPro:IPR006058); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041) Range:  from: 3126710    to: 3127156    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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