Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------ANAC46                                                           ------->MYC3                                                           <-------MYC3                        <-----                                                          --------->O2                         ------                                                        <---------ALFIN1                       ------                                                    ----------->HVH21                     --------->YAB1                                                    --------->WRKY12               --------->At4g35610                                                  --------->At4g35610              <---------At4g35610                           --------->TOE2(3)      <---------ZAT2               <---------ARR14(2)                        <-----------GT1           --------->ZAT2               --------->ARR14(2)    --------->TOE2(3)--------->CCA1(2)            <---------At4g35610          <-----------ARR10 ----ARR11(3)      <------ZmHOX2a(1)         ----------------------->TaNAC69(2)--------->GLK1(2) --->ARR11(3) --------->ATHB12          ------->TEIL--------->WRKY38(1)       <---------GLK1(2)<-----   cttaaaccacaaacactgataggatataaccaaaattccaagtacctgtttgagctgaccacgtttcttagagagattgagaatctgctcattcagaagt  3092200                                            <----------DOF2                                            --------->GLK1(1)                                          <------NtERF2                                         <---------ERF1                                        <---------ANAC46                                        <---------RAP2.3(3)                                        <---------RAP2.3(2)                                        <---------ANAC58                                        <---------ANAC58                                        <---------DEAR3(1)                                        --------->ATERF1(2)      ------>ZmHOX2a(1)                 <---------RAP2.6(2)     --------->TOE2(3)                 --------->RAP2.6(3)     --------->TOE1(3)        --------->GLK1(2) <---------ANAC58                                 <---   <---------ATHB12           <-----------ARR10 <---------ANAC46                                 ---- ----HSFB2a(1)               <---------GLK1(2)  <---------ANAC58               <---------At4g35610 --->HSFB2a(1)        <---------At4g35610<---------RAP2.3(1)                   ----------->RAV1(2) --->HSFC1(2)         --------->At4g35610------>NtERF2  --------->ANAC46       --------->At4g35610 ----HSFC1(2)      ---------->DOF2   --------->ALFIN1 --------->DEAR3(2) <-----------ARR10     ------   ttccaatccttagcatcgaaacaaagctgaagaatctcagtggcggctttccttgtaccggctacgttttcggcgagtctcatctgcttctcttcattca  3092300                            --------->At4g35610     <------ZmHOX2a(2)      <---------At4g35610    <---------ARR14(2)      --------->LBD16                  --------->YAB1    --------->ARR14(2)     --------->ANAC46            --------->ANAC55(2) ------At4g35610    --------->ANAC58  --------->LBD16  <---------ANAC55(2)                      ----- ----->At4g35610    --------->ANAC58 --------->LBD16  <---------LBD16                  ----------->GT1 --->YAB1           <xxxxxxxxxxxxxxxxsmallRNA(fl3)  ----------->HVH21<-------TEIL    <----------ID1   gaagccgatctatcgttgcctcaagcttcccgctgtctccctgaaatacaaactatgacggaatgagaagatgcaaaaatttcgaaaacgagaaaaaaac  3092400                                                                                      <----------ID1         ------>ZmHOX2a(2)                                                           --------->DEAR3(2)        --------->CCA1(2)                                                            --------->SPL7        <------ZmHOX2a(2)                                                        <---------bZIP60(1)       --------->ARR14(2)                                                        --------->ANAC58       <---------ARR11(3)                                                        <---------ANAC55(2)       --------->ARR11(3)                                                        --------->bZIP60(1)       <---------ARR14(2)              --------->GLK1(1)                         --------->ANAC55(2)       --------->AGP1                  <---------GLK1(1)   ---------->DOF2       --------->ANAC58       <-----------ARR10     --------->DEAR3(1)        --------->At4g35610    ----------->HVH21       <---------AGP1     --------->ANAC46         --------->GLK1(2)          ----------->TGA1      <---------CCA1(2)   --------->ANAC58         <-----------ARR10        <---------At4g35610<----- ---->TOE2(3)             --------->ANAC58 --------->TOE1(2)            --------->GLK1(2)   ------->TEIL   ttaatatcagatctgagtaattgaagactcgccatcgtgagaaatccaacgagaatcaactcaaagtagttgaaattctggtgacggaacgacgaagctt  3092500                                                                                  ------>MYB46(1)                                                         <---------ZAT14          ------>MYB83   ----                    <---------SPL7                  --------->ZAT2                -------->P    *TSS                <---------ARR14(2)                  --------->At4g35610          <---------ALFIN1<---         ---------->DOF2      --------->CCA1(2)     <---------At4g35610    --------->GLK1(1)  ------- -----DOF2     <------ZmHOX2a(1)         <----------DOF2 --------->ZAT14   <---------GLK1(1)  -------   taaactatggagaaagaggagacggacgagagagatgagagagcttttgggagtagctgagcacagataattcgcagagttcccaaccccttgaacaaga  3092600                     <---------AGP1                                                 ----------->GT1                     --------->ARR11(3)                                             --------->ANAC55(2)                     <---------ARR14(2)                                         <------MYB46(1)                     ------->TEIL                                               <------MYB83      --------->GLK1(2)                                                        --------->MYB59     --------->ARR14(2)               --------->At4g35610                      --------->MYB46(2)     <---------ARR14(2) <----------DOF2                                        <---------AtMYB61     <---------GLK1(2) ------>ZmHOX2a(2)                                       --------->MYB111(1) ----->GLK1(1)       --------->ARR14(2)                                 <---------ATHB12          --- ------GLK1(1)       <---------ARR11(3)                             ------------>CBF<---------ANAC55(2) -->ANAC58     <---------MYB46(3)     <---------At4g35610<------------CBF--------->YAB1   --------->MYB52(1) -->ANAC58   ------>NtERF2  <-----------GT1        --------->AHL20(2) --------->WOX13(1) <-----------GT1   aatctcagattcttcggccgatggatctttttacatgggctgctaatgggccattaactaattgttttgagtcaatcaggtttggtatgtaataccggtc  3092700                                                                   --------->MYB52(2)                                                                   <---------MYB46(3)                                                                  <---------TOE1(2)                          --------->HSFC1(2)                --------->ANAC46                ---------                 <------MYB83                  <---------WOX13(1)<---------MYB52(1)         <--------                 <------MYB46(1)      <------ZmHOX2a(2)     <---------TGA1a                --------->GLK1(1)                 <---------MYB46(3)  --------->ARR14(2)     --------->bZIP60(1)         <---------YAB1                <---------AtMYB61    <---------ARR14(2)     --------->TGA1a       <-----------ARR10               <--------P <---------HSFC1(2) --------->ATHB12   <---------SPL7   <---------CCA1(2)          <---------AtMYB61       --------->DEAR3(2)        <---------O2    --------->LBD16<---------GLK1(1) -------->GT1--------->ALFIN1     --------->MYB46(3)        --------->O2    ------>NtERF2 <---------ARR11(3)   tagttatatggtatggtgttggttcagaagtatcgaaccgatcccattgattgaacaaactcacgtcgttcgttcttccgcccaaatctcatgatatctt  3092800                                                                                         ------>ZmHOX2a(2)                                                                                         ============                                                                                        <------ZmHOX2a(2)                                                                                        =============                                                                                       <---------ARR14(2)                                                                                       <---------ARR11(3)                                                                                       <-----------ARR10                                                                                       --------->ARR14(2)                                                                                       --------->ARR14(3)     <---------ANAC58                                                                  --------->ARR11(3)     <---------ANAC58                                                                  <---------ARR14(3) --------->HSFC1(2)                   <---------HSFB2a(2)                            ----------->ARR10 --------->HSFB2a(1)             <---------ETT(2)                                  ---------->DOF2 <---------HSFB2a(1)        --------->YAB1--------->GLK1(1)                     --------->HSFB2a(2) <---------HSFC1(2)   --------->GLK1(2)   <---------GLK1(1)<-------TEIL   --------->ATHB12<----------DOF2 >ARR11(3)           <---------GLK1(2)--------->HSFB2a(2) --------->GLK1(2)     <---------HSFB2a(2) -ARR11(3)   <---------ARR14(2)  --------->ETT(2)<-----------HVH21     --------->TOE2(3)<---------RVE1(1)   cgaattttcgtagcgaaaccagagattctataatgtcgatcgagaactccctgtctcgagattcaatggtttaccttgattactggaaagatcttttctg  3092900                            <------ZmHOX2a(1)                          <---------TOE1(3)                          <---------TOE2(3)                       --------->DOF5.7(2)                      --------->TOE2(3)             <------ZmHOX2a(1)          <---------HSFB2a(2)                                                                      --          --------->HSFB2a(2)                                                                 ------>ZmHOX2a(1) <---------AHL20(2)   --------->TOE1(3)   ------->TEIL            <-----------GT1           ========= ===================HOX2a_HOX2a      ----------->GT1          <---------YAB1                ------>ZmHOX2a(2) ===================HOX2a_HOX2a<------ZmHOX2a(1)    <---------ANAC46                  <------------CBF   aatttttttcatcgaggagaagaacgttaaggaggaagaaggtgaatcttacttctgtgaaactcttattacgctcttagaattcgaatattgatcctct  3093000                      -------->P                   <---------ANAC58                   <---------ANAC58                  <---------At4g35610             <-------TEIL            --------->ARR14(1)           <---------ARR14(2)           --------->ARR14(2)           --------->ARR11(1)           <---------GLK1(2)                                                                 --------         ----------->ARR10                                                                 <------MYB83       ------>ZmHOX2a(1)            <---------ZAT6                                         <------MYB46(1)      --------->TOE2(3)         <------------CBF                                        <------ZmHOX2a(1) ------->ANAC55(2)--------->At4g35610                            --------->ZAT18  --------->ZAT6 =============HOX2a_HOX2a    ------------>CBF    <------------CBF<---------ZAT18 --------->ZAT18   tacatattccttagattcgctgcttacctccatcaattgtgttaacttcggtattggtttcgatttgtgctctagagattatttgcactaggaaggtgaa  3093100  Previous    Next  AGI:  At5g09900.1    Description:  EMB2107/MSA/RPN5A (EMBRYO DEFECTIVE 2107). similar to 26S proteasome regulatory subunit, putative (RPN5) [Arabidopsis thaliana] (TAIR:AT5G64760.1); similar to 26S proteasome regulatory subunit, putative (RPN5) [Arabidopsis thaliana] (TAIR:AT5G64760.2); similar to 52O08_14 [Brassica rapa subsp. pekinensis] (GB:AAZ67560.1); similar to unknown [Populus trichocarpa] (GB:ABK95699.1); similar to hypothetical protein OsI_013841 [Oryza sativa (indica cultivar-group)] (GB:EAY92608.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Proteasome component region PCI (InterPro:IPR000717) Range:  from: 3089279    to: 3092596    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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