Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                          --------->HSFC1(2)                                                                      ------>ZmHOX2a(2)   --------->HSFB2a(1)                                                                      =============================HOX2a_HOX2a                           ---------->ID1                    ===================================HOX2a_HOX2a                  <---------LBD16         <---------CCA1(2)  ------>ZmHOX2a(1)            <---------HSFC1(2)                  <---------ANAC46      =====================================HOX2a_HOX2a <------ZmHOX2a(2)                 <---------LBD16        ------>ZmHOX2a(1)    ================HOX2a_HOX2a--------->ARR14(2)              <-----------HVH21         <---------CCA1(2)<---------ALFIN1    <----------DOF2------>ZmHOX2a(1)   ctctctcttctctctctgtctcggggtttgtctctatcgctcctatctctctccttgctactcctctctcgatcgctctctttatctctcgatccttctc  3084900                                                                                           ------>NtERF2                                                                                           --------->LBD16                                                                      --------------------->WRI1                                                                     --------->DEAR3(1)   --------->ANAC46                                                                     --------->AtMYB61   <---------LBD16                               <---------At4g35610                   <---------ALFIN1  --------->ARR14(2)                            --------->ZAT2                          --------->MYB46(3) <---------ARR14(2)                            --------->At4g35610                  --------->MYB46(3)  <-----------HVH21                            <---------ZAT2              <------ZmHOX2a(2)            ------>NtERF2 --------->TOE2(3)          <---------At4g35610        --------->ARR14(2)            <---------ATERF1(1) <---------DAG2 --------->ARR14(2)  ------>ZmHOX2a(1)  <---------ARR14(2)           --------->DEAR3(1) --------->TOE1(3)         <-----------RAV1(1)       --------->LBD16<---------MYB55(2)--------->ATERF1(1) --->HSFB2a(2)  <---------ARR14(2)  ===========================HOX2a_HOX2a<---------MYB52(1)---------   taaccttatccctctccctatccttgtctctgctgctcctatgcctctctctctcccgatccctcttaccaccaccgttctcttcgccgtctccgcgaga  3085000                  ------->GAMYB                                        <---------HSFB2a(2)                -------->P   <-----------GT1   ------>NtERF2           --------->HSFB2a(2)            --------->At4g35610     ------>ZmHOX2a(1)       ------>ZmHOX2a(1)            <---------At4g35610<---------At4g35610       ------>ZmHOX2a(1)      ------>ZmHOX2a(1) <-- >ANAC46------>NtERF2 <----------DOF2       ----------->RAV1(2)    <----------DOF2       ------>ZmHOX2a(1)   cttcttactccgactgctaacccgctcttcttcacctccttcttccccctgcctctctcctccttctctctttctgtaactcctctcgctcctctcgttc  3085100                                                                                                 <---                                                                                                 ----                                                                                              <------                                                                                             --------                                                                                           <---------DEAR3(1)                                        --------->MYB46(3)                              <---------ARR14(2)                                    ------>ZmHOX2a(1)                                   --------->ARR11(1)                                   --------->TOE2(3)                                <---------DOF5.7(2)                           --------->ZAT2                                          <---------WRKY12                           --------->At4g35610               <---------ARR14(2)    <---------WRKY45         <----------DOF2   <---------ZAT2------->GAMYB       --------->ARR14(2)    <---------WRKY38(1)         <---------DAG2    <---------At4g35610     --------->LBD16                --------->DOF5.7(2) -------ALFIN1 <---------YAB1   ------>ZmHOX2a(1) <-----------RAV1(2)            <-----------HVH21   ccactctcttcctttttcttattcgacccagctccttcctcaaccgtcttctccaggtactcgtattcgtcaaactccattctcgtcaacgattcggcgt  3085200 <---------ANAC58 ----------->GT1                                                                              ------- <---------ANAC58                                                                     --------->HSFB2a(2) <---------ANAC46                                                                     <---------HSFB2a(2) <---------ANAC55(2)                                                                  <---------HSFC1(1) ------ARR14(2)       <---------TOE2(3)                                            <---------ARR11(3) ----->ARR14(2)       <---------TOE1(3)                                            --------->ARR11(3) ---ANAC46         <<<<<<<<<MYB98                  <---------YAB1              ------>ZmHOX2a(2) -->ID1       <----------DOF2                      --------->ICU4*TSS         <---------WOX13(1)    -   atttcgtaaattagggcttttgttagggtttcgaattggaagaagctaatgagataattgaatttagttgtgcctgtttgatcgatatctagaagatggt  3085300      --------->TOE2(3)                                       --------->ANAC58     ----------->GT1                                          --------->ANAC58     --------->YAB1                 --------->ANAC46       <---------MYB52(1)   <---------ATHB51 <---------AHL20(2)        ----------->GT1 --------------->AtSPL8         <---------PCF2      ------- ---->GT1      --------->LBD16    --------->MYB52(1)  ------------>MYB.PH3(1)   <---------ATHB12 -------->AHL20(2) --------->YAB1 <-----------GT1  --------->AHL20(2)--------->ATHB12       ---------   gatttaatcgtaaattccgaataatagcgaggttataaacggtacttcgtacataaaatcagttacgacagtgatgggcccaatagttgtatagaaaagg  3085400                                                  --------->ATHB51                                                  <---------ICU4                                                  <---------AHL20(2)                                                  -------->ATHB1              --------->ICU4                      -------->HAHB4                               ------            <---------AHL20(1)                    --------->ATHB12                             ------            --------->AHL20(2)                   <---------ATHB51                              <-----            <--------ATHB1                       <---------YAB1                                ------            <---------ICU4                       <---------ATHB12                        <---------RAP2.6(2)            <---------AHL20(2)                   --------->ICU4              <-----------GT1 --------      --------->YAB1                           --------->YAB1         --------->TOE2(3) <---------At5g28300      --------->TOE2(3)                    --------->ZAT6           ------->TEIL        --------->RAP2.6(3) -->DAG2    --------->YAB1             <-----------GT1          <-----------GT1        <-----------GT1 ->DOF2    --------->ICU4   ------>ZmHOX2a(1)  <---------ICU4  <-----------GT1      <---------ICU4   cccatttatcttaataatttttaaaacgtcctaaattgttttttctcactaattattgtttttttttatcaacctatatatacaacttattacggccaca  3085500                     <---------AHL20(2)                     --------->AHL20(1)                    --------->AHL20(2)          <---------AtMYB61          --------->MYB59     <---------TOE2(3)     --------->MYB59<---------AHL20(2)                                                              -     <---------TOE1(3)                                                                             <- --->ANAC46        --------->AHL20(2)                     <-------TEIL                             -- --->ANAC58        <---------AHL20(1)                  <---------ZAT2            <---------ANAC58  -- ----ALFIN1<------MYB83  <---------YAB1                --------->At4g35610       <---------ANAC58  <- --->ANAC58<------MYB46(1)                       --------->DAG2         ------->TEIL   ----------->GT1 --->RAV1(1)       <---------AHL20(2)           ---------->DOF2     <---------TOE2(3)<---------ANAC46   caatatttaggtttggttcaaattattttgatggagaaatagtatggcagaaaagcgagcttcattttttgatgtatttgataacttgtgggtaaaatgt  3085600        <---------YAB1     --------->ICU4     <---------ATHB51                   ----------->GT1                  ---------->DOF2 -------->LBD16                        <---------WOX13(1)         ------------------------>ANAC81 --------HSFC1(1)                    <<<<<<<<<RAP2.2            --------->ANAC46 ------->HSFC1(1)             <----------DOF2                   --------->ANAC58                ----- ------->HSFB2a(2)        <---------GLK1(2)     <----------ID1  --------->ANAC58               <----- --------HSFB2a(2) <----------DOF2  <---------TOE2(3)   --------->AHL20(1)                  ---------   tccagaaattattcttccatgctttacagtttcttttttagattgaaaaaaaaacaaatatgttacaagaaaaaaaaaaggaaatagaagtttttatgaa  3085700     <---------YAB1                                     <---------ATHB12   --------->YAB1                                 ------>NtERF2              ----------->GT1  <---------ATHB12         -------->P          --------->At4g35610          ----------->GT1 -->TEIL     ------>ZmHOX2a(2)               <---------ANAC58        ------->GAMYB         --------->AHL20(2) ------GT1 --------->ARR11(3)--------->AtMYB61 <---------At4g35610 --------->At4g35610     --------->YAB1 ------>AtSPL8 ----------->GT1               <---------ANAC58     --------->MYB52(1)      <---------ATHB12   ccccatcataagtgatctggttaaaaaactaccatcgcctctccattgcctctgccaaatgatcaaaacaactgcaagcggataaaaaatcaataatatt  3085800  Previous    Next  AGI:  At5g09880.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G16940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71720.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Splicing factor, CC1-like; (InterPro:IPR006509) Range:  from: 3081443    to: 3085265    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g09890.1    Description:  protein kinase, putative. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.3); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ68445.1); similar to protein kinase [Raphanus sativus] (GB:BAC76894.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61347.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains Range:  from: 3085546    to: 3089011    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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