Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   ====================================                                                                 <----------DOF2--------->ICU4                                                  <------ZmHOX2a(2)             ----------->GT1                                           --------->ALFIN1      --------------->AGL15              <            <------ZmHOX2a(2)          ==================HOX2a_HOX2a <<<<<<<<<MYB98 <---------AHL20(2)            ==================================HOX2a_HOX2a        <---------------AGL15              <  ---------->DOF2   --------->LBD16    <------ZmHOX2a(1)---------->DOF2  <------ZmHOX2a(1)          < >YAB1     <---------ARR11(3)     <---------REM1(1) --------->WOX13(1) --------->MYB59  <-----------GT1 ---WRI1   --------->ARR11(3)  --------->ALFIN1   ==============================HOX2a_HOX2a<---------   cccccaaagagaagatcacatccgagtttttaggtgttgaaggaggtgttcgatccatcaaagtttactttgttaggaagtaatgtttatttatcacttg  3066200                                              ------>MYB83                                   -------->ATHB1                                   <------------ATHB5                                   <--------ATHB1                                   <---------ICU4                                   --------->ATHB51                                   --------->ATHB12                                  <---------ATHB12                                  --------->ICU4                                  <---------ATHB51                                  <---------YAB1                                                    -   <---------ZAT14              <---------------AGL15   --------->HSFB2a(2)                         < ================================================MADS_MADS                        --------->ARR11(3)- ---------ANAC58               ------------>ATHB5<---------ICU4           --------->ICU4      ------>ZmHOX2a(1) ---------ANAC58        <----------DOF2       ------>MYB46(1)      <---------ANAC58       --------->ARR14(2) ---------ANAC46     <---------ARR11(3)     <---------MYB59        <---------ANAC58       <---------ARR14(2) --GT1     <---------YAB1      <-----------------AGL3   <---------HSFB2a(2)       <---------ARR11(3)<   ttgagtgtagattatgaatacaatgtcttttatgcaattattggaacctaatatttatctcgaacaatttcgagcaatttttgaaatcttcaaatccttc  3066300          --------->YAB1         --------->ICU4     <---------At4g35610   --------->ZAT18 -------->TGA1a                                                                       --------->ATHB12 ---------TGA1a                                       --------->ICU4                <---------WOX13(1) -------->O2 --------->ATHB12                  <---------ANAC58                  <---------YAB1   --- ---------O2<---------YAB1  --------->AHL20(2) <---------ANAC58           <---------AHL20(2)      <--   tcatgtgagctattatgatttcttctgcaataacataccatgaacaatttcgagcaatttttgaatacagatgttttaaatttctaattgatttgattcc  3066400                                                                                   <---------ARR11(3)                                                                                  --------->GLK1(1)                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(2)                                                                            --------->MYB52(1)                                                                            ------>MYB83                                                                            ------>MYB46(1)                                                                           --------->MYB55(1)                                                                          --------->MYB46(3)                                                                         --------->ANAC58                                                                         --------->ANAC58                                                                         ------>MYB46(1)                                            --------->HSFB2a(2)          ------>MYB83                                            <---------HSFB2a(2)          --------->ANAC46                 --------->ARR14(2)   <---------ARR11(3)               --------->AtMYB61            ------>NtERF2      --------->ANAC46                        --------->DEAR3(1)           --------->ANAC58    --------->ANAC58                        <---------ALFIN1           --------->ANAC46    --------->AtLEC2                       --------->MYB46(3)         ----           --------->ANAC58    --------->ANAC58                     --------->ANAC46<---------YAB1      --------->ZAT6 ----------->RAV1(1)    ----------->GT1        --------->ZAT18<---------GLK1(1) ------>ANAC46   <---------ARR14(2)   --------->ARR11(3)<---------AHL20(2)<---------MYB55(2)   <----- -------ALFIN1  <---------CCA1(2) ---------->DOF2   --------->AHL20(2)<---------MYB55(2)  <----------   acacattaaaactacgccatatccaacatatacaggcaaaggtcttctgtaaaactaaataatgtgaagcccaccacccaacggatatcattttactatg  3066500                                                                                                   --                                                                     <---------ARR14(2)            <-                                                                    <---------GLK1(1)              --                                                                    --------->GLK1(1)              <-                                                                 --------->LBD16                  ---                                                        --------->CCA1(2)                         <--                                                        <------ZmHOX2a(2)  --------->LBD16       ----                                                       <-----------ARR10  <---------ANAC58       ----                                                       --------->ARR14(2) <---------ANAC46       <---                                                       <---------ARR14(2) <---------ANAC58      =====                                                   ------>ZmHOX2a(2)<---------RVE1(1)           =====                                                  <------ZmHOX2a(2)<---------ARR14(2)           =====                                             <---------LBD16    --------->LBD16                 =====                                        --------->AHL20(1)     <---------LBD16                  <----                                        <---------AHL20(1)  --------->ANAC46          <---------WOX13(1)                                        --------->ARR11(3)  --------->ANAC58       <---------YAB1<---                  <---------YAB1        <---------ARR11(3)  --------->ANAC58       <---------AHL20(2)        --------->YAB1             <---------AHL20(2)  <---------ARR11(3)<---------LBD16    <-------- ------>DOF2    ----------->GT1    --------->AHL20(2)  --------->AGP1--------->ARR14(2)<---------MYB46(3) ----YAB1 ------->TEIL         <---------AHL20(2)--------->ARR14(2)--------->ARR14(2)<------------CBF -GT1  <---------ATHB12        --------->AHL20(2)<---------ARR14(2)<---------ARR11(3)>>>>>>>>>ARR2<--   aaaggcccaatgaacatgttgttattcagtttataaattaaaaatatttcggatccagatccaagcccggatatttgcggataatttgattgttgggagg  3066600              <---------ARR14(2)              <---------TCP16(1)              --------->ARR14(2)              <---------TCP20            --------->LBD16          ------>ZmHOX2a(2)          <---------LBD16         <------ZmHOX2a(2)        --------->ARR14(2)      --------->LBD16     --------->HSFB2a(2)     <---------HSFB2a(2)    <---------LBD16 ------->ARR11(3) --------ARR14(2) ------->ARR14(2) --------ARR11(3)            <---------YAB1 ------>GLK1(1)    --------->ANAC46 -------RVE1(1)  <---------ALFIN1                                               <---------YAB1 ----->ARR14(2) --------->MYB46(3)                                           <---------RVE1(1) ----->ARR11(3) ------>ZmHOX2a(2)                                           <---------GLK1(2) ------ARR14(2) =================================HOX2a_HOX2a                <---------ARR11(3) ================HOX2a_HOX2a<---------AHL20(2)                              --------->ARR14(2) ===============HOX2a_HOX2a --------->AHL20(2)                              <---------ARR14(2) =====================HOX2a_HOX2a                                         --------->LBD16 ======================HOX2a_HOX2a          <---------ALFIN1             --------->HSFB2a(2) --ZmHOX2a(1) <-----------ARR10<------------CBF                          <---------HSFB2a(2) ------ARR11(3)==================================HOX2a_HOX2a          --------->ARR14(2) -ANAC46<---------ARR14(2) --------->AHL20(2)                         <---------ARR14(2) -------GLK1(1)<------ZmHOX2a(2) *TSS     ------>ZmHOX2a(1)          <---------MYB52(1)   atatcttccggatccggatccaccctaaattaaaattgttcttcctccactcttcttcaagtttggcctccgtttccagatttttattcaattcttctta  3066700                                                              <---------ANAC46                                                              --------->bZIP60(1)                                                              <---------bZIP60(1)                                                              <---------O2                                                              <---------ANAC58                                                              <---------ANAC58                                                        <---------AtMYB61                                                     --------->ARR14(2)                                                     <---------ARR14(2)                            ----------->GT1        --------->LBD16                            <---------ANAC58     <-----------------AGL2                      --------                 <---------ATERF1(1)           --------->ARR14(2)                            <-------                 ------>NtERF2<---------MYB52(1) <---------LBD16                             <-------                --------->DEAR3(1)            --------->GLK1(1)                         --------->ALFIN1              <---------ATERF1(1)             <---------GLK1(1)                 <---------ICU4              --------->LBD16--------->LBD16  <---------CCA1(2)    --------->At5g28300<---------ANAC46            <---------LBD16 <---------ANAC55(2)<---------ARR14(2) <---------DEAR3(2)--------->ZAT14          --------->ARR14(2)<---------ANAC58  <----------TaMYB80  ----------->GT1   <---------ZAT14 -          <---------ARR14(2)<---------ANAC46 ---------->TaMYB80 <------NtERF2   --------->ATHB12   <-   <----------DOF2   --------->YAB1   <---------WRKY18(1)    <------NtERF2  ------>ZmHOX2a(1)--------   atcaacttttaaaatccggcgactcatagtccgtgaattttgaccggcatatccggttttggtgtcgtcggtaaattcctcttcattgcagtggaagctg  3066800           --------->YAB1           <---------ICU4 ->ZAT2   <---------ATHB51 --At4g35610  ----------->GT1 --ZAT2   --------->ICU4                                 ----------->GT1      --------->YAB1 -------->ATHB12      <----------DOF2               <---------ANAC58     <---------ANAC58 ------TEIL--------->MYB52(1)    <---------YAB1     <---------ANAC58     <---------ANAC46 ->At4g35610  --------->YAB1  --------->ICU4   <----------DOF2           <---------ANAC58   gttcattgagaaataatggtaactcttttgggattatgagacttgttttcttttgcttcttgttaaatctatatagcttataaaaacttgttttctgcaa  3066900                   ------->TEIL                 <-------TEIL              <------ZmHOX2a(1)             --------->At4g35610  --------->ANAC58              <-----            <---------TOE2(2)               --------->ZAT2       --------->ANAC46            --------            <---------TOE1(2)               <---------At4g35610  --------->ANAC58      <-----------GT1    --------->ARR14(2)                      <---------ZAT2    --------->ZAT14      <---------DAG2    <---------ARR14(2)                    <---------ZAT18 --------->TOE2(3)        <----------DOF2  <---------MYB46(3)                    <---------At4g35610   <---------ZAT18   <---------ALFIN1 ----   tttgtggttcttcgcaggatgcatttagagatgctatattgcagcgagctccaattgaaacctttgcactcaagactgttcaacactttatacaacctca  3067000                            --------->ZAT14                        <---------ARR11(3)                 ----------->GT1                  --------->MYB52(1)         --------->ANAC55(2) ------RAV1(2)   ------->GAMYB          <---------ZAT6 --------->ICU4 ->TOE2(3)      --------->MYB46(3)  <---------MYB52(1) <---------YAB1             ---------->DOF2 ----->ANAC55(2)<---------MYB52(2) <----------DOF2    <----------DOF2        <---------MYB52(2)   ggtaactctttcgaatcaactaacaatttcttcactcctttagtcttacttattgtctttattgtaaaatttgacagaaacaaacaaagttggctcaaga  3067100  Previous    Next  AGI:  At5g09860.1    Description:  nuclear matrix protein-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO64869.1); similar to hypothetical protein OsJ_008799 [Oryza sativa (japonica cultivar-group)] (GB:EAZ25316.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64861.1); contains domain PTHR13265 (PTHR13265) Range:  from: 3066633    to: 3070934    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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