Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <---------ANAC46                                                                                       <---------TOE1(1)                                                 <------MYB46(1)                       <---------TOE2(1)                                                 <------MYB83                     --------------->AGL15                                                 ----------->GT1             <----------DOF2                   --------->AHL20(2)          <---------WOX13(1)        <---------ARR11(3)    ------          --------->CCA1(2)     --------->MYB52(1)                       --------->ARR11(3)<------ZmHOX2a(1)     ---------->DOF2    <----------ID1     --------->YAB1        ---------->DOF2  <---------ZAT6 --------->GT1    --------->AHL20(2)     --------->GLK1(2)    --------->AHL20(2)  <---------------AGL15   atagtttaaaagatagacaaataaaaaaaacaaaaaacagaagaatcagattggtaaattcagattaaaaaggaagaccctttactgttacgaggaagaa  3065500                                                                                    --------->KAN4(2)                                          ----------->GT1                          --------->HSFC1(2)                                 <---------YAB1                                    <---------HSFC1(2)                                 --------->ICU4                                    <---------HSFB2a(1)                               <---------ICU4                                      --------->HSFB2a(1)                               --------->YAB1                                      <---------KAN4(1)                              <---------ATHB51                                     <----------TaMYB80                              <---------ATHB12                                     --------->KAN4(1)                              --------->ICU4                                      ---------->TaMYB80        <---------AtMYB61 <------ZmHOX2a(2)                 --------->DAG2        <---------KAN4(2)       <------ZmHOX2a(1) <---------ARR11(3)                ---------->DOF2    ----------->GT1       ==========================HOX2a_HOX2a     <---------AHL20(2)        ---------->DOF2          < ---->DOF2               --------->ARR11(3)      --------->AHL20(2)     >>>>>>>>>TBF1           <----   agaaacagaggaggtcgtctcacataagatcaataatgagtaaatggcaaattaaaaaaaaaaaagggaatgaagaagaaagggaatattccaaatttga  3065600                                                                                 --------->YAB1                                                                                 --------->AHL20(2)                                                                               --------->AHL20(2)                                                                           --------->AHL20(2)                                                                           --------->YAB1                            <---------DAG2                            <---------MYB52(1)                            <----------DOF2                          <-------GAMYB          <------MYB46(1)  <---------ANAC58                         ----------->GT1          <------MYB83     <---------ANAC58  --------->HSFB2a(2)<------MYB46(1)--------->AHL20(1) ----------DOF2     <-------GAMYB            <---------HSFB2a(2)<------MYB83--------->AHL20(2)    --- -----TOE2(3)      ----------->GT1<----------DOF2              --------->MYB59--------->YAB1   ------   ggctttagaatttggtttggagggttattgctttttctttcattcttctgcaagtttttttttgtttggtccgttaataaaaataatattcagacagaat  3065700                                              --------->ATHB12                                            --------------->AGL15                                   -                                            <----------DOF2                                     <----                                            <---------------AGL15                               <----             <------ZmHOX2a(1)              <---------DAG2                              --------->ANAC58  <-----------GT1  ------------------------>ANAC81                                      --------->ANAC58  --------->MYB52(1)   ---------->DOF2     <---------ANAC58                        <-----------ARR10< ------>WOX13(1) ---------->DOF2           <---------ANAC58             ----------->HVH21     <------ --->GLK1(2)<----------ID1             --------->GLK1(1)        <----------DOF2  ---------->DOF2<----   caattaacagttttaggacaaaagtaaaagaagaaaatgggaattgctttattgagggatgatgctctttgccctggacagagcaaagctaagcaagttg  3065800                                                                                =====================                                                                                <----------DOF2                                                                                <---------------AGL15          <------MYB83                                                          --------------->AGL15          <------MYB46(1)                                                  --------->DOF5.7(2)       <-------GAMYB                                                     <---------ANAC58      --------->MYB55(2)                                                 <---------ANAC58      <---------MYB46(3)                                                 <---------ANAC46     <---------AtMYB61                                              --------->ATHB51 <-------GAMYB --------->At4g35610                                  --------->YAB1 -------->MYB52(2)                                                  <--------ATHB1 -----MYB46(3) <---------At4g35610                                  <---------ICU4 --MYB46(1)<---------ANAC46                                        <---------ATHB51 ---------MYB46(3)                                                 <---------ATHB12 --P <---------TOE2(3)  --------->AGP1                             --------->ICU4         *TSS --MYB83<--------P     --------->At4g35610                   <----------DOF2    <---------DAG2     --   gtttgttgtggttggggagatgaacagctctagagagagagagagagagatgtgagtgtttttctttcaataatggcgtttactttttttagtttttctt  3065900                                                                             ------------>CBF                                                                            --------->ANAC58                                                                            --------->ANAC58                <-----------GT1                                            --------->PCF5          <-    <---------ANAC46                   <------------CBF                    --------->TCP16(1)  <-----   <-----------------------TaNAC69(2) --------->ATHB12                    <---------TCP16(2)   <----- ----------->HVH21           <---------DAG2                              --------->ZAT18       ------ ----------->TGA1            <----------DOF2                            --------->ALFIN1  ----------- ============================================MADS_MADS          ---------->DOF2     <-----------HVH21 ------->ANAC55(2)         <-----------------AG            ---------->ID1<---------ZAT18  <---------ATHB12   caagtgacgagaaacattttacatgtttcgacttttttggttattgggcctctaaatttttggccctatagcaagtggacccaatatgtcaaatcaatat  3066000                                                                                            ---------                                                                                           <<<<<<<<<ARR2                                                                                           <---------ATHB12                                                                                     --------->At5g28300                                                                                    <---------DEAR3(2)     <------MYB83                                                               --------->ETT(2)     <------MYB46(1)                                                            <---------ETT(2) --------YAB1                                                                   --------->DEAR3(1) ----ARR11(3)                      <---------At4g35610             <---------ANAC46--------->ANAC46 ----AHL20(1)           --------->YAB1                             ----------->GT1<------------------ --->AHL20(1)      --------->MYB52(2)                 <---------ATHB12          <---------DEAR3(1) ->CBF     ---------->DOF2    <----------DOF2<---------ALFIN1<---------ATHB12<---------ANAC46   tttcatttggtctcaaagtgtttgtttcatgactttcatctcatgagccactgccactcactaatcgtttagtgaatttacgtcgacggtacaatcaaaa  3066100                                                                 <---------------AGL15                                                                 <----------DOF2--------->ICU4                                                  <------ZmHOX2a(2)             ----------->GT1     <                                           --------->ALFIN1      --------------->AGL15              <            ==================================HOX2a_HOX2a        ====================================            <------ZmHOX2a(2)          <------ZmHOX2a(1)---------->DOF2  <------ZmHOX2a(1)          <  ---------->DOF2   --------->LBD16    ==================HOX2a_HOX2a <<<<<<<<<MYB98 <---------AHL20(2) >YAB1     --------->ARR11(3)     <---------REM1(1) --------->WOX13(1) --------->MYB59  <-----------GT1 ---WRI1   <---------ARR11(3)  --------->ALFIN1   ==============================HOX2a_HOX2a<---------   cccccaaagagaagatcacatccgagtttttaggtgttgaaggaggtgttcgatccatcaaagtttactttgttaggaagtaatgtttatttatcacttg  3066200                                              ------>MYB83                                   <---------ICU4                                   -------->ATHB1                                   --------->ATHB51                                   <------------ATHB5                                   --------->ATHB12                                   <--------ATHB1                                  --------->ICU4                                  <---------ATHB51                                  <---------ATHB12                                  <---------YAB1                                                    -   <---------ZAT14              <---------------AGL15   <---------HSFB2a(2)                         < ---------ANAC58               <-----------------AGL3   --------->HSFB2a(2)       <---------ARR11(3)- ---------ANAC46        <----------DOF2       ------>MYB46(1)                     --------->ARR11(3)< ================================================MADS_MADS                --------->ICU4      ------>ZmHOX2a(1) ---------ANAC58     <---------ARR11(3)     <---------MYB59        <---------ANAC58       <---------ARR14(2) --GT1     <---------YAB1      ------------>ATHB5<---------ICU4    <---------ANAC58       --------->ARR14(2)   ttgagtgtagattatgaatacaatgtcttttatgcaattattggaacctaatatttatctcgaacaatttcgagcaatttttgaaatcttcaaatccttc  3066300          --------->YAB1         --------->ICU4     <---------At4g35610   --------->ZAT18 -------->TGA1a                                                                       --------->ATHB12 ---------TGA1a                                       --------->ICU4                <---------WOX13(1) -------->O2 --------->ATHB12                  <---------ANAC58                  <---------YAB1   <-- ---------O2<---------YAB1  --------->AHL20(2) <---------ANAC58           <---------AHL20(2)      ---   tcatgtgagctattatgatttcttctgcaataacataccatgaacaatttcgagcaatttttgaatacagatgttttaaatttctaattgatttgattcc  3066400  Previous    Next  AGI:  At5g09850.1    Description:  transcription elongation factor-related. similar to transcription elongation factor-related [Arabidopsis thaliana] (TAIR:AT5G05140.1); similar to 52O08_11 [Brassica rapa subsp. pekinensis] (GB:AAZ67557.1); contains InterPro domain Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal; (InterPro:IPR010990); contains InterPro domain Transcription elongation factor, TFIIS/CRSP70, N-terminal; (InterPro:IPR014765); contains InterPro domain Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type; (InterPro:IPR003617) Range:  from: 3063252    to: 3065890    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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