Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <---------------AGL15               <---------YAB1             --------->YAB1                                                         <---------ARR11(3)             <-----------GT1                   ---------->DOF2           <---------ZAT2<-------------            <---------YAB1                    --------->YAB1             <---------At4g35610          <---------ICU4                  --------->MYB46(3)      ---------->DOF2   --------->ARR11(3)         --------->ICU4               ------>ZmHOX2a(2)  --------->ARR11(3) --------->At4g35610         <---------YAB1           <---------YAB1       <---------YAB1  --------->ZAT18--------->TOE2(3)  --------->At4g35610 --------------->AtSPL8 <---------YAB1  <---------YAB1 ----------->GT1   tagatgctgagattattacaatacatagtacctcttatgatccaactatcaaagtgtatgattttgatcaaagtgagcaggtcaaaaatctcaaatttgg  3058600                         <---------TOE1(3)                    <---------ICU4                   <---------YAB1          <------ZmHOX2a(2)         --------->AGP1  <---------TOE2(3)               --------->TOE2(3)     <---------LBD16--------->ATHB12                     --------->TOE1(3)                         --   <-----------GT1 --------->ICU4            ---------->DOF2                         ---------->DOF2 ----AGL1<---------ARR11(3)              ----------->RAV1(1)  <---------ATHB12---------->DOF2  ------   caattttcccagatcaatttgatgattagggtttcaaagtttcccacaaaagtttcaaaccctaatcaatagatgaaattgaaagaagaaagcagtataa  3058700                                         --------->HSFC1(2)                                         <---------HSFC1(2)      --------->ANAC46                  ------->TEIL ------->ZAT14     <---------ANAC58  <---------ATHB12      <-----------TGA1                      <--- --->YAB1          <---------ANAC58--------->WOX13(1)   ------>ZmHOX2a(1)                  --------->DAG2   gaacactcacgagatgaattggcttaagtttcgaagtcaatgaagcttcgacttgctccttcgtcaccatctctctctctctctctcaaacaaaaattga  3058800                --------->ATHB12           --------->ZAT14           <---------ZAT14                       <------MYB83           <---------ZAT18                  <----------DOF2        <---------At5g28300              --------->ANAC58                        <------MYB83       <-----------GT1                   --------->ANAC58          <---------SPL7<------MYB46(1)    <---------ICU4      --------->YAB1   --------->ANAC46          <---------ZAT14  ------------>CBF --------->TOE2(3)    *TSS              --------->SPL7<---------AtMYB61         --------->MYB59 ------GLK1(1) --------->ICU4     <-----------GT1<------MYB46(1) <---------------AtSPL3<------------CBF   aatccctaattactgtactcattgaattagaatattaaaccatacgctatttggttttggtttagcgagagtacggtttagtttggttcaattgggatac  3058900                                                                                                    -                                                                                                    -                       --------->YAB1               <---------MYB52(1)                             --                     --------->AHL20(2)            <----------DOF2       ------>ZmHOX2a(1)         <-          ------------>CBF     <---------TOE2(3)  --------->TOE2(3)<---------ALFIN1                <-    <---------MYB52(1) <---------ICU4         <----------DOF2     ------>ZmHOX2a(1)               <--   <-------GAMYB    --------->YAB1          <------------------------ANAC81                       *TSS   cattcggttatcgacaattccaaaataataactagggtttaagctctgctttcctttacttcgtcttcctcactcctaaaaccctctcagtctctccatt  3059000                                                  --------->ARR14(2)                                             ------>MYB46(1)                                             ------>MYB83                                             --------->AtLEC2                                 <------                                        <-----------GT1                                  <-----------ARR10         --------->YAB1            <---------AGP1 <---------ARR14(2)                  ------->GAMYB --------->LBD16                   --------->ARR14(2)                               --------->ANAC58 -------->ANAC46                   <---------ARR11(3)                               --------->ANAC58 -------->LBD16                    --------->ARR11(3)                             --------->MYB46(3) ------->HSFB2a(2)  ------>NtERF2 <---------CCA1(2)                               <---------ALFIN1 --------LBD16     <---------ETT(1)<---------ARR14(2)                           <---------ALFIN1 --------HSFB2a(2) --------->DEAR3(1) <----------DOF2           ------>NtERF2 ------>ZmHOX2a(1)  <--- -------LBD16      ----------->HVH21 ------>ZmHOX2a(2)          --------->LBD16 --------->ANAC46-----   tcccggagcaaaaatagctctccgaccatgaagtttggatctttaccatccaaatcccttctcttccgcctctcttcttcctccacaacccaatctcacc  3059100                                                              <---------ATERF1(1)                                                            <---------LBD16                                                          <---------ALFIN1                                                          --------->DEAR3(1)                                                          --------->AtMYB61                                                         --------->ZAT2                                                       --------->AtMYB61                                                       <---------ALFIN1             =================                                                       ------->GAMYB                ------>ZmHOX2a(2)                                                      <---------MYB55(2)           ==================                                                   --------->MYB46(3)              <------ZmHOX2a(2)            <----------DOF2                      --------->AtMYB61                <---------ARR14(2)           <---------DAG2                        <---------ALFIN1                 <-----------ARR10        <-----------GT1                         --------->ANAC46 ------>NtERF2    --------->ARR14(2)       <-----------GT1                         ----------->RAV1(1)       <---------ANAC58 ---At5g28300               <-------TEIL      <---------ALFIN1------>NtERF2     --------->LBD16 --------HVH21     --------->ZAT6             --------->ANAC46--------->LBD16 <---------LBD16       - ---->DEAR3(1)  --------->YAB1     ------>ZmHOX2a(1)  --------->MYB46(3) <---------ANAC58           <   gtcgaacaattacccttttcatcactaacattcattcctctccattctccaccacaaccacctccggctccaatttcgtctccggatccagccattctcc  3059200                                      <---------TOE1(3)                     <---------ANAC46                                      <---------TOE2(3)          --------->At4g35610                                   <---------MYB52(1)            <---------ZAT2                                   <<<<<<<<<MYB98                --------->ZAT2                                ------>ZmHOX2a(2)                <---------At4g35610         =============================HOX2a_HOX2a             ------>ZmHOX2a(1)         ==============================HOX2a_HOX2a            --------->LBD16         ------>ZmHOX2a(1)      =====================================HOX2a_HOX2a <---------ETT(2) ===============HOX2a_HOX2a    <------ZmHOX2a(2)            ----------->RAV1(2)  --------->ETT(2)---- ===============HOX2a_HOX2a   <---------ARR14(2)    --------->ALFIN1       -------->P          <----- -------->HSFB2a(2)           --------->ARR14(2) <---------AtMYB61  --------->At5g28300      <------- ---------HSFB2a(2)   --------->HSFB2a(1)        <---------MYB46(3)----------->GT1   >>>>>>>>>>>>>>>>   ctctcgacgtcctcagcaagacgaagagtcccgatccgttagggtttcggtctggtgggacttcctgagctgtaacttacctgtagacaccaatgtctac  3059300                     ------>NtERF2                    --------->RAP2.3(2)                    --------->RRTF1(3)                    --------->RRTF1(2)                    --------->RAP2.6(2)                                            --------->ZAT2                    --------->DEAR3(1)                                             <---------At4g35610                   --------->RAP2.3(1)                                             <---------ZAT2                  --------->ABI4(1)                                                --------->At4g35610                  ------>NtERF2                                                 <---------At5g28300                 --------->ANAC46                                              <-----------GT1                 --------->DEAR3(1)                                       <---------ANAC46                --------->MYB46(3)                  <---------ATHB12      <---------ANAC58               <---------At5g28300                 ------>MYB83           <---------bZIP60(2)<------ZmHOX2a(2)           --------->WOX13(1)     <---------At4g35610                     <---------ANAC58   ========        --------->ANAC58          --------->At4g35610--------->YAB1      <-----------------------TaNAC69(2) ------>DOF2 <---------ATHB12     <---------LBD16 --------->WOX13(1)   ----------->TGA1     <-------- ----REM1(2) --------->MYB46(3)  --------->MYB52(1)------>MYB46(1)     ----------->HVH21    <-------- --ETT(2)<---------ATHB12      ---------->DOF2<------ZmHOX2a(1)     <---------DEAR3(1)  --------->LBD16 >LFY   --------->ANAC58  --------->YAB1  ---------->DOF2  --------->YAB1----------->STF1   ---------   aaagtagcacaatcaatcaccgccgctatcagaaacagcggaatcaaaggaccaatcacaatcacagccttcggtgacgttttacagctccccagatcaa  3059400                                                                                    <---------AGP1                                                                                    --------->AGP1                                                                                    <---------ARR14(2)                                                                                    --------->ARR11(3)                                                                                    --------->ARR14(2)                                                                        ------>ZmHOX2a(2)                                                                       <<<<<<<<<GATA-2             <-                                                                       <<<<<<<<<GATA-3           <---                                                                       <<<<<<<<<GATA-1           <---                                                                       <<<<<<<<<GATA-4------>ZmHOX2a(2)                                                                       <------ZmHOX2a(2)         <---                                                  ----------->GT1     <---------ARR11(3)         <---                     <------ZmHOX2a(1)            <---------MYB46(3)  <---------AGP1<-----------ARR10              <---------At4g35610           --------->MYB52(1)        --------->ARR11(3)       <-----              --------->At4g35610          ===================================HOX2a_HOX2a   --------- ===========================HOX2a_HOX2a    ------>ZmHOX2a(1)    <---------YAB1      <---------ARR11(3) -ARR11(3)    --------->LBD16              ====================================HOX2a_HOX2a  <-------- ---ARR10    --------->ANAC46             <---------MYB59     <---------At4g35610  <---------CCA1(2) >AGP1      <-----------------AGL1 --------->YAB1--------->ALFIN1  <---------WOX13(1)<------ZmHOX2a(2)   accaagacgctctctccgctacaggaatcagtctcactcatgttcctaacggtggtaagaacagtgctgatagatctctaatcacagatcttatgtgttg  3059500  Previous    Next  AGI:  At5g09830.1    Description:  BolA-like family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO46485.1); contains InterPro domain BolA-like protein (InterPro:IPR002634) Range:  from: 3057647    to: 3058822    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g09840.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14463.1); contains InterPro domain Protein of unknown function DUF537 (InterPro:IPR007491) Range:  from: 3058998    to: 3061971    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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