Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   <-                                 --------->KAN4(1)                                               <---                                 <---------KAN4(1)                                           --------                                <---------YAB1                                               <-------  <-------TEIL                 <---------GLK1(2)                      ------>ZmHOX2a(1)     ------>MYB83 -------YAB1           <-----------GT1      --------->YAB1           --------->TOE2(3)      --------- ---->YAB1      --------->MYB46(3)--------->KAN4(2)       --------->TOE1(3)                 ------>MYB46(1) -----ICU4 --------->YAB1--------->MYB46(3) <-----------GT1--------->DOF5.7(2)              --------- --->ICU4  --------->ANAC46  <---------ATHB12             --------->TOE2(3)      --------->LBD16 ----   atgattcatctattcgtaaccaatttaaccaaagattattccaaaataacaatgtgcaaacgttatccattcctcaatacttccccagtaaaccaagcta  2992800                                                              --------->TOE1(2)                                                             <---------HSFC1(2)                                                             --------->HSFC1(2)                                                             <---------HSFB2a(1)                                                             --------->MYB46(3)                                                         --------->LBD16                                                        --------->HSFB2a(2)                                                        <---------HSFB2a(2) ------->ARR11(3)                                   <----------DOF2                                 < --------ARR11(3)                              --------->HSFC1(2)                                   < ------TOE2(3)                                 <---------HSFC1(2)                                  -- ->ZAT2                                        <---------HSFB2a(1)                               ---- --ZAT2    --------->LBD16                     --------->HSFB2a(1)                             <----- >ANAC58 <---------LBD16                  --------->DAG2<---------HSFC1(1)                  <-------- >ANAC58--------->MYB52(1)                --------------->AtSPL8     <------ZmHOX2a(1)      --------- ------->ARR10       --------->MYB52(1) ---------->DOF2 --------->HSFC1(1)          --------->GLK1(2)   agattttaaacaccggagacagaaaacggagaagtcagaaacaaaaggtaccttctttccagaaccatcgaggaagaaaactcgataatctagggattcg  2992900   <---------HSFC1(2)   --------->HSFB2a(1)   <---------HSFB2a(1)   --------->HSFC1(2)  <---------ARR14(2)  --------->ARR14(2)  ------->TEIL                                                                        ----------->RAV1(2) ------NtERF2                                          --------->ARR11(3)             --------->At4g35610 ---------SPL7                                         <---------ARR11(3)             <---------At4g35610 ------->RAP2.6(2)    ----------->RAV1(2)          ---------->DOF2                 <---------At4g35610 -->NtERF2       --------->TOE1(3)          <---------ZAT14                    <---------ARR11(3) ----RAP2.6(2)   --------->TOE2(3)          --------->ZAT14                    --------->ARR11(3) -ARR14(2)     ------->TEIL <------ZmHOX2a(1)<-----------RAV1(2)           ---------->DOF2          - >ARR14(2) --------->HSFB2a(2) ----------->GT1  <------ZmHOX2a(1)         --------->AtMYB61 <--------   gccggaccttcttcttgaaccttaacctgaggattgtaaatggcactgcaggagaaaggtctcttagatttcaacaccaaagctcttctgctgaagcaga  2993000                   <---------GLK1(1)               <---------TOE2(2)              <------NtERF2              <-----------RAV1(2)             --------->LBD16             <------NtERF2             ------>NtERF2            ----------->RAV1(1)            --------->DEAR3(1)            --------->RAP2.3(2)                                                          --------->ZAT14           --------->RAP2.3(1)                                                           <---------ZAT14          --------->At4g35610                                                       <------NtERF2          <---------ATERF1(1)                                                      <---------ATERF1(1)          ------>NtERF2                                                       --------->ANAC58          --------->LBD16                          <---------ANAC46        ----------->HVH21         --------->ANAC46                          <---------ANAC58  <---------ANAC46 --------->At4g35610      --------->ARR14(2)                           <---------ANAC58<---------MYB46(3)<---------DEAR3(1)      <---------ARR14(2)                      <---------ANAC58    <---------AtMYB61<-----------HVH21     ------>MYB83  --------->GLK1(1)          <---------ANAC46    --------->ALFIN1--------->DEAR3(1)     ------>MYB46(1)                      <---------ANAC58     <---------AtMYB61  <---------MYB46(3)   --------->AtMYB61          <------NtERF2   <---------ANAC58 --------->ALFIN1   <---------DEAR3(1)   <---------MYB111(1)     <---------LBD16<---------ANAC58 <-----------RAV1(2)--------->ANAC58 -------->AtMYB61<------ZmHOX2a(1)    ---------->DOF2  <------ZmHOX2a(1)  <-----------HVH21 -At4g35610--------->RRTF1(1)--------->LBD16  <---------AtLEC2<------ZmHOX2a(1)--------->DEAR3(1)----   gaccaccaaatccgccgcaggatttcttcgccggaagagtgaaagcttgcttggcgaggaaacaggaggtggtttgggtcacggccgtcgctgcagttaa  2993100               -------->ATHB1               <---------ICU4               --------->ATHB51              <---------YAB1              <---------ATHB51              --------->ICU4           <------NtERF2          <---------RAP2.6(3)          ------>NtERF2         >>>>>>>>>AtERF-4         >>>>>>>>>AtERF-5         --------->ANAC46         >>>>>>>>>AtERF-1         >>>>>>>>>AtERF-3         >>>>>>>>>AtERF-2         --------->RAP2.3(3)         --------->RAP2.3(2)         --------->DEAR3(1)                         <---------At5g28300                      --------         --------->RAP2.6(2)                       <-----------GT1                         --------->ANAC58        --------->RAP2.3(1)                   <---------ANAC58                        --------->AtMYB61        --------->ATERF1(1)                   <---------ANAC58                     --------->ANAC58        --------->ERF1   --------->ICU4  <---------ANAC58                          --------->ANAC46        --------->MYB46(3)               <---------ANAC58                          --------->ANAC58       --------->At4g35610              <------NtERF2  --------->ANAC46          <-----------GT1       <---------ATERF1(1)--------->ATHB12 <----------DOF2                  <----------DOF2--------->ANAC58 ----->ZAT6------------>ATHB5         <---------RAP2.6(2)            <----------DOF2 --------->MYB46(3)   cactctagtagccgccattattgtggaaagattgaaaatggtggcctttcgttttaccctcgactggctctctttattctttatcacaccaccaagaaag  2993200                                                       <-------GAMYB                                                      <-----------RAV1(1)                                                   <---------ARR14(2)                                                   --------->ARR14(2)                                              --------->ALFIN1                                             <-------PIF5                                             <-------MYC3                                             ------->PIF5                                             ------->MYC2                                             <-------MYC2                                             ------->MYC3                                            <---------ANAC55(2)                                            --------->TGA1a              ------>MYB46(1)                                            --------->ANAC55(2)          -------->P                                            ===================MYC_MYB   ------>MYB83                                            ===========================================bZIP_DOF                                            --------->O2               <---------MYB111(1)                                            <---------O2<---------MYB52(1)           --------->YAB1                                            <---------bZIP60(2)        <---------MYB59                                            <---------ANAC46           --------->MYB46(3)                                            <---------ANAC58   <------MYB83 <----------DOF2                                            <---------TGA1a    <------MYB46(1)       -------->HAHB4                               <---------TOE2(3) <---------ANAC58      <---------MYB46(2)                             <---------AHL20(2)  <---------ANAC58      <---------MYB111(2)                         <---------AHL20(2) <---------ANAC58  --------->MYB111(1)   <---------YAB1                        --------->AHL20(2)  ======================================MYC_MYB >>>>>>>>>GATA-1                      <---------ARR11(3)   ------------>OsbHLH66    <-----------GT1 --------->ICU4 ------------------------>ANAC81         <------ZmHOX2a(2)    --------->MYB59     --------->YAB1 -->DOF2      *TSS    --------->ARR11(3)--------->ARR11(3) <---------ANAC46--------->TOE2(3)   acagaacacaaaaacaaaaacaaagatttattttatgttatagatcacgtggggttctgttgagtaggtattaccaacctttagtaataatagataaata  2993300                                                  <-----------TGA1                                                 <---------bZIP60(1)                                                 <---------TGA1a                                                 --------->O2                                                 --------->TGA1a                                                 <---------O2                                                 --------->ANAC58                                                 --------->bZIP60(2)                                                 --------->ANAC55(1)                                                 --------->ANAC58                                                 --------->ANAC55(2)                                                 <---------ANAC55(2)                                          <-------GAMYB                                          =================MYC_MYB                               xxxxxxxxxxxxxxx>smallRNA(si3)                             <---------ANAC58    --------->bZIP60(1)                             <---------ANAC46    --------->ANAC46                             <---------ANAC58   <-----------STF1                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            xxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       --------->LBD16                            xxxxxxxxxxxxxxxxx>smallRNA(fl3)                           <---------LBD16                            xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        <---------LBD16                            *TSS         <------MYB83                                xxxxxxxxxxxxxxxx                            xxxxxxxxxxxxxxxx>smallRNA(i)                             xxxxxxxxxxxxxxxx                            xxxxxxxxxxxxxxxx>smallRNA(s)                            xxxxxxxxxxxxxxxxx                            xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        xxxxxxxxxxxxxxxx>smallRNA(i)                            xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxx>smallRNA(s)                            xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                xxxxxxxxxxxxxxxx>smallRNA(s)                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxx>smallRNA(s)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                xxxxxxxxxxxxxxxx>smallRNA(s)                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxx>smallRNA(i)                            xxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxx>smallRNA(s)                            xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                xxxxxxxxxxxxxxxx>smallRNA(s)                            xxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------LBD16                            xxxxxxxxxxxxxxx>smallRNA(se3)              <---------GLK1(1)                       <---------TOE2(3) <---------MYB46(3)           --------->ARR11(3)     --------                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           --------->ARR14(3)     --------                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------ARR14(3)   <---------ATERF1(1)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 --------->ZAT14         <------MYB46(1)             xxxxxxxxxxxxxxx>smallRNA(le3)                 --------->ZAT18    ----------------------->TaNAC69(2)<---------ARR11(3)------>NtERF2                 <---------ZAT18  <---------REM1(1)              xxxxxxxxxxxxxxxx>smallRNA(fl3)                 <---------ZAT14  <---------ANAC46<-----------HVH21 xxxxxxxxxxxxxxxx>smallRNA(le3)            <---------ZAT14 xxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   gttcaaatttggactagagtgcacaaaggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcc  2993400        ---------->ID1       <-----------GT1  --------->AHL20(2)  <---------AHL20(2) <---------AHL20(1) --------->AHL20(1) --------->AHL20(2) <---------AHL20(2) >smallRNA(si3)                                         <------MYB83                              <-- >smallRNA(s)             --------->ICU4                <------MYB46(1)                         ----- >smallRNA(si3) <---------AHL20(2)                  --------->ATHB12                          ------- ->ANAC58       --------->AHL20(2)               ---------->DOF2                       <-------TEIL ->ANAC58  <---------MYB52(1)   ------->TEIL    ------>ZmHOX2a(1)                  <---------------AtSPL8   aaatttatttttcgttttttaatttgtgaagatgaactctgttttgggtcctaaagattggttttggataatcgaaaacaatagagaagtacgttgaaaa  2993500                                                                                          <---------ARR11(3)        --------------->AtSPL3                                                  <---------YAB1        --------------->AtSPL8                                               --------->ICU4        <---------------AtSPL8      ---------->DOF2      <------ZmHOX2a(1)   <---------YAB1 ---------HVH21            <------ZmHOX2a(1)       --------->At4g35610  <---------bZIP60(1) ---->DAG2               <---------TOE2(3)      --------->At4g35610     --------->bZIP60(1)<---------YAB1 --->DOF2 <---------SPL7 <---------TOE1(3)    --------->YAB1         --------->ICU4  <-------TEIL   ggtcacatatatcgtacacaaactgataaggatttatacaaagttgtatcagaagcagaggagacataggcatgatgtgatgatgagtacatgatcatat  2993600                                                                  <----------DOF2                  <---------CCA1(2)                              <---------DAG2              <-------         <-----------GT1                           <---------At4g35610           --------->LBD16   <-    <------ZmHOX2a(1)     <---------YAB1  <-------TEIL        <---------ALFIN1   ------>NtERF2    <--  <---------TOE2(3)------->TEIL<---------ARR11(3)  --------->At4g35610         <---------LBD16    <--   agttgaggaaataacttattgtatctctctgattatctctcagtttcattttctgatgaattcaacacctttctgaatacttccggctaattcatctttt  2993700  Previous    Next  AGI:  At5g09650.1    Description:  ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6); inorganic diphosphatase/ pyrophosphatase. Identical to Soluble inorganic pyrophosphatase 1, chloroplast precursor (PPA1) [Arabidopsis Thaliana] (GB:Q9LXC9;GB:Q8LBD6); similar to ATPPA5 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 5), inorganic diphosphatase/ pyrophosphatase [Arabidopsis thaliana] (TAIR:AT4G01480.1); similar to unknown [Populus trichocarpa] (GB:ABK94842.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162) Range:  from: 2991150    to: 2993214    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g09655.1    Description:  pre-tRNA. tRNA-Val (anticodon: AAC) Range:  from: 2993328    to: 2993401    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g09660.1    Description:  PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2); malate dehydrogenase. Identical to Malate dehydrogenase, glyoxysomal precursor [Arabidopsis Thaliana] (GB:Q9ZP05); similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to Malate dehydrogenase 2, glyoxysomal precursor (GB:Q9XFW3); similar to Malate dehydrogenase 1, glyoxysomal precursor (GB:Q43743); contains InterPro domain Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal; (InterPro:IPR015955); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain NAD(P)-bi Range:  from: 2993445    to: 2995676    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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