Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------KAN4(2)                    <---------HSFB2a(2)                    --------->HSFC1(1)                                                         ------           --------->ARR14(2)                                                   --------->ANAC55(2)           <---------ARR14(2)        >>>>>>>GRF7              --------->At4g35610           <-------GAMYB  ------->GAMYB     --------->HSFB2a(2) <---------ZAT18       <---------At4g35610          <---------MYB46(3) ->HSFB2a(2)       <---------LBD16<-----------HVH21 <---------TOE2(3)           <---------ANAC55(2) --HSFB2a(2)<---------GLK1(1) <----------DOF2   --------->TOE2(3)       --------->TOE2(3) <---------YAB1   acaacgagcagtggatatgtttctggaataagcttttgtcagggaactaaacttaatgtttctctgctaaaaaacctttgttatgtaatgtgatggttaa  2978700                                                                           <---------At4g35610                                                                          <---------TOE1(3)                                                                          <---------TOE2(3)                                <----------DOF2                       <----------DOF2                             <-----------GT1                      <----------DOF2                         <----------DOF2                        <---------YAB1                         <---------DAG2        --------->ATHB12<-----------GT1                    <--                      <-----------GT1         <---------YAB1   --------->ARR11(3)           --------- ---->DOF2           ---------->ID1     <---------AHL20(2)     <---------ARR11(3)        ---------->DOF2   agagaagaagttttcaaaattttgtcactttatactttatagtttattttcattggattggatattatctttctttaagcttataagttttcaaagaagc  2978800                                                               <---------At4g35610                                                               --------->ZAT2                                                               <---------ZAT2                                                               --------->At4g35610                                                             <-----------RAV1(2)                                                         ------>NtERF2                                                        --------->bZIP60(1)                                                        <---------bZIP60(1)                                                        --------->ANAC46                                                      ------->GAMYB               <------MYB46(1)                                                     --------->MYB46(3)           <------MYB83                         -------->P                 ------>MYB83                 --------->MYB59                      --------->At4g35610           ------>MYB46(1)           --------->ATHB12                      <---------HSFC1(2)           --------->MYB52(1)  <---------At4g35610              <---------HSFB2a(2)                 --------->TOE1(2) <---------ANAC58   xxxxxxxxxxxxxxxxx>smallRNA(le3)                --------->TOE2(2) <---------ANAC58                - ---------HVH21       --------->HSFC1(2)         --------->MYB46(3)--------->STY1(2)               -- ->DOF2      --------->LBD16 --------->ANAC46    --------->DEAR3(2)<---------STY1(2)   <---------YAB1   ggtcacaaaactagcccgagaagaagctaccacaaaactagcgatgtaagaaccaacgacgacacagctggctagctcattgtttggttcttattctttg  2978900           ------>NtERF2          --------->ANAC46          --------->ANAC58          --------->ANAC58        --------->AtMYB61        <---------ALFIN1     --------->DEAR3(1)     --------->AtMYB61                                                                              -     <---------ALFIN1                  --------->AtMYB61                                            -    <---------MYB55(2)       --------->MYB46(3)       --------->LBD16                      --------->LBD16    --------->MYB46(3)  --------->ANAC55(2)       --------->ARR14(2)        <---------ANAC46   ------   ------>MYB46(1)      --------->ANAC46          <---------ARR14(2)    <---------ANAC58 <---------LBD16   ------>MYB83         <---------ANAC55(2)     <---------MYB46(3)      <---------ANAC58--------->MYB52(1)  --------->ANAC46      --------->ANAC58       --------->ALFIN1    --------->ANAC55(2)----------->HVH21 --------->MYB46(3)     --------->ANAC55(1)<---------ZAT14         <---------ANAC55(2)--------->MYB46(3) -------->DEAR3(2)      --------->ANAC58   --------->ZAT14       <-----------GT1     --------->ANAC58 ------->PCF2          <---------LBD16--------->MYB46(3)      <-----------GT1        --------->ANAC58   gaacccaccaccacgccaaaacttatacggaacaactacaaccactacagtggttccgaagtttttatcacttgacttgtttgtagcactcaccggagag  2979000                                                    <----------DOF2                                             --------->LBD16                                  -------                                          --------->ALFIN1                            --------->TOE2(3)                                         ------->MYC3                            <---------MYB52(2)                                         <-------MYC2                        ------------>CBF <------                                         ------->MYC2  <---------ANAC58     --------->ANAC55(2)    <-                                         --------->TOE1(2)                  --------->ANAC58 <-------    ---------->DOF2                      <-------MYC3  <---------ANAC58     --------->ANAC58 -------- --------->LBD16             <---------YAB1 <---------ANAC46                --------->ANAC46 -------- -------->ANAC58          --------->GLK1(2)<---------LBD16         ----------->GT1 <-----------GT1--- -------->ANAC58  <---------ARR14(2)    <---------ANAC58 <---------MYB52(1) <---------ANAC55(2)   <-- ----->ARR10<-----------RAV1(2)         <---------ANAC58<-------GAMYB     <-----------GT1    <-------   acccgctaaaggagccagaggtttcgataatctcattgtgaaacgtgcggataactttcgttggggaatttgtaatttacgcaattaacctctaatttat  2979100    <---------AHL20(2)                           <-----------RAV1(1)   <---------ICU4                         <---------CCA1(2)                                      ---- -->AHL20(2)                          ------>ZmHOX2a(2)                                          ---- ---AHL20(2)  <---------ICU4         <------ZmHOX2a(2)                                           <--- --------AHL20(2)                   --------->ARR11(3)                               --------->ATHB12 --AHL20(1)  <---------AHL20(2)     <---------ARR11(3)                              <---------YAB1 ->AHL20(1)  <---------ATHB51       <---------ARR14(2)                             <---------ARR11(3) ->AHL20(2)  --------->ICU4 <---------AHL20(2)<----------DOF2    --------->HSFB2a(2)<------ZmHOX2a(2) ------>AHL20(2)           --------->AHL20(2)*TSS<---------MYB46(3)                --------->ARR11(3) -------AHL20(2) <---------ICU4     --------->ARR14(2) <---------ANAC58        <------ZmHOX2a(1) <--- --AHL20(2)  --------->AHL20(2)    <---------GLK1(1)   <---------ANAC58   --------->ANAC46--------->At4g35610   tttaatttttatgaaataattagggctgatttaatcgagatcccatttcttttgttggcttacttctctcgaatttacgcaggaagatcattagcagaga  2979200                                                           <-----------HVH21                                                          ============================bZIP_DOF                                                          <---------TGA1a                                                          --------->TGA1a                                                          --------->bZIP60(2)                                                          <---------bZIP60(1)                                                          --------->bZIP60(1)                                                          --------->DEAR3(1)                                                          <---------bZIP60(2)                                                          --------->O2                                                       ----------->HVH21                                                      ------>NtERF2                                                     <---------O2                                                     <---------TGA1a                                                     --------->O2                                                     --------->ANAC58                                                     --------->ANAC58                                                     --------->TGA1a                                                     =================================bZIP_DOF                                 ==============================bZIP_DOF                                 <----------DOF2     --------->ANAC46                                 ===================================bZIP_DOF                           --------->ANAC46        <---------ATERF1(1)         <---------ANAC46                           =================bZIP_DOF<------NtERF2 <---------LBD16                           --------->ANAC58        ------>NtERF2--------->ARR14(2)                           --------->TGA1a        ----------->HVH21        <----------DOF2                           --------->ANAC58       --------->At1g77200  <------NtERF2          <------    <---------At4g35610    --------->O2           <---------DEAR3(1) --------->ANAC46        <-------    ----------->RAV1(2)    <---------O2           --------->DEAR3(1)--------->LBD16         ---------    --------->At4g35610   <---------LBD16   --------->ARR14(2)  <---------ARR14(2)         <---------ANAC55(2) ----->ARR14(2)          <---------ALFIN1   <---------GLK1(2)  --------->ATERF1(1)      --------->ARR14(2) ----->GLK1(1)          ----------->HVH21<------ZmHOX2a(2)<---------O2------>NtERF2     <---------ARR14(2) ------ARR14(2)        ------>NtERF2--------------------->WRI1<---------ATERF1(1)      <---------GLK1(1) ------GLK1(1)----------------------->TaNAC69(2) --------->DEAR3(2) ------>NtERF2<---------MYB52(1) <   attctcatctgattcagtccatggctgccacggctcttttccgatcgattcgccgacgcgacgtcgtctccgcgcctctttccgtttacaaatccgtatg  2979300                         <---------AtMYB61                     <----------DOF2                 <---------ANAC46             --------->HSFB2a(2)                                   -              <---------WOX13(1)              <---------HSFB2a(2)                                   <             <---------ANAC58                ----------->GT1                                        -  <-----------GT1<---------ANAC58       <---------WOX13(1)                <---------ANAC58     <----- ---TOE2(2)  <---------ANAC58     --------->ATHB12                        <---------ANAC46    <------ --MYB52(1) <---------MYB46(3)    -------->ATHB1                  <---------MYB52(1)     --------->ICU4 >LBD16     --------->ATHB12      --------->ATHB51         <---------YAB1 <---------ANAC58--------->ATHB12 -----------GT1  <---------ANAC58<---------YAB1       <XXXXXXXXXXXXXXXXXXXXMIR420        <---------YAB1   tttttcactctcgttgattgcgtctttttggtggtattattgatagatcgagaaaatttttgtgattcgtttagtttcgtctttcgacttcatgatttac  2979400                                                               <---------ARR14(2)                                                               --------->ARR14(2)     --------->ZAT2                                            <---------GLK1(2)     --------->At4g35610                                     --------->LBD16       <---------AHL20(2)     <---------At4g35610           <------ZmHOX2a(1)        <---------ANAC58 <---------ANAC55(2)     <---------ZAT2     <------NtERF2                       <---------ANAC46 <---------ANAC46 ---------->RAV1(2)    --------->LBD16                      <---------ANAC58 --------->ANAC55(2) ---------At4g35610   --------->LBD16         <---------AHL20(2)      <---------ANAC58 -------->At4g35610  <---------LBD16          --------->AHL20(2)      <---------ANAC58 ------GT1--------->At4g35610     --------->LBD16          <---------LBD16   <---------ANAC55(1)<---- -----GT1 <---------At4g35610   <---------LBD16    <-----------GT1    <---------ANAC46          -----   ccatctgagctctgcttcgcttcgccggaaattttcaggaaatgatatatatatatccatttgcggattttggtgtgttatgtgtttaatcgtttcattt  2979500                                                                                  <---------WOX13(1)                                                       --------->TOE1(3)        --------->ATHB12                                                    <-----------GT1         --------->ATHB12           --------->At4g35610         --------->ARR14(2)                  <---------YAB1  <---------ANAC58           <---------At4g35610         <---------ARR14(2)           <-----------GT1        <---------ANAC58 -----AHL20(2)          <---------ANAC46     <---------ETT(2)  <----------DOF2<---------WOX13(1) ---->AHL20(2)        <---------ANAC46<---------CCA1(2)--------->TOE2(3)<----------DOF2---------->DOF2   aaacaaaaatttgagatgagattgttgtgtaagtagacacatatctgtcgaaattaaccttaagactttgtttccttttgattgattgagaaagcttgta  2979600  Previous    Next  AGI:  At5g09590.1    Description:  mtHSC70-2 (HEAT SHOCK PROTEIN 70); ATP binding / unfolded protein binding. similar to MTHSC70-1 (mitochondrial heat shock protein 70-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT4G37910.1); similar to CPHSC70-1 (chloroplast heat shock protein 70-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT4G24280.1); similar to cpHSC70-2 (HEAT SHOCK PROTEIN 70-7), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G49910.1); similar to Heat shock 70 kDa protein, mitochondrial precursor (GB:P37900); similar to Heat shock 70 kDa protein, mitochondrial precursor (GB:Q01899); similar t Range:  from: 2975549    to: 2978751    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g09600.1    Description:  SDH3-1 (succinate dehydrogenase 3-1). similar to SDH3-2 [Arabidopsis thaliana] (TAIR:AT4G32210.1); similar to unknown [Populus trichocarpa] (GB:ABK94739.1); contains InterPro domain Succinate dehydrogenase, cytochrome b subunit; (InterPro:IPR000701) Range:  from: 2979145    to: 2980845    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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