Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->GLK1(2)        <---------HSFB2a(2)      ------>ZmHOX2a(1)  <---------ARR14(2)                                                        <----------DOF2  --------->ARR14(2)                                                  --------->ANAC58 --------->WOX13(1)                                                 <------ZmHOX2a(1)           <---- ---------HVH21       ---------->DOF2                           ---------->DOF2             --------- --DOF2 --------->HSFB2a(2)                            <---------YAB1 --------->ANAC58     ----------   cgtcaatcctctagagaacctatacaaagagaattcaaattagtcaaaacacatgagatgattctacaaaggacgaaacttttactgagttcaaaaagcc  2956300                           <---------ANAC58                         --------->ARR11(3)                                                         -                         <---------ARR11(3)          <---------ETT(2)                              --             <---------ANAC55(2)             <---------ETT(2)         <------ZmHOX2a(2)           ---          --------->ARR14(2)         <------ZmHOX2a(2)               <---------ARR11(3)      <------- -----MYB59 <---------LBD16<---------ANAC58  --------->ETT(2)        --------->ARR14(2)      <------- >DAG2    <---------ARR14(2)        <---------ARR11(3)<---------HSFB2a(2)                  --------->ARR11(3) >DOF2 ----------------->AGL1       --------->ARR11(3)--------->HSFB2a(2)     <----------DOF2<-------   taaccttctgcgaatacgggaagagaagagcttgacaagatcatcggtagacatgtcgagaagagcatcgagatcgactcctttgaaggcgaatttcttg  2956400                               --------->MYB46(3)                        --------->At4g35610                        <---------At4g35610                        --------->ZAT2                     <---------ZAT2                     <---------At4g35610 -------->KAN4(2)   <-----------RAV1(1) ------->HSFB2a(1)  ------>ZmHOX2a(1)      --------->bZIP60(2) ---->TEIL        ----------->RAV1(2)      --------->ANAC46                <-----------GT1          < --ANAC58      <---------GLK1(1)         <---------ALFIN1            <------NtERF2              ----- --ANAC46      --------->GLK1(1)      --------->ARR14(2)            --------->At4g35610         <---- --ANAC58<----------DOF2<---------ZAT2<---------TCP20               <---------At4g35610    <---------LBD16   aacgttctcttctttggaactcctgctgctgcaacctctggttccacatcagcctagagagtcccattggagccgaattacaaacccacaaatttcggaa  2956500                                                                <------NtERF2                                                            ------>ZmHOX2a(2)                                                          <---------ARR14(2)                                                          --------->ARR14(2)                                                    <-----------RAV1(1)                                                <-----------------AGL2                                                <---------YAB1<---------DEAR3(1)                                               >>>>>>>>>>>>>>>>>LFY       <---------TOE2(3)                                               -------->P --------->ARR11(3)                                          <-----------ARR10<---------GLK1(1) --------->ALFIN1 ---------YAB1                           ==========================HOX2a_HOX2a----------->GT1 ---->GLK1(1)                       --------->CCA1(2)    <---------CCA1(2)--------->DAG2           <- -----GLK1(1)                ------->TEIL<------ZmHOX2a(1)<---------AGP1--------->CCA1(2)     <------   atgtgatagcagtagtagaattagagagatgtatgtagatagaggaacttaccattgttggatctcggcgaaagataaggtggataaactctaaatctgt  2956600                                                         --------->CCA1(2)                                                        --------->AHL20(1)                                                  ------>ZmHOX2a(2)                                                 =======================HOX2a_HOX2a                                                 <------ZmHOX2a(2)                                                <---------ARR14(2)                                                --------->ARR14(2)      <---------ANAC58                         <------NtERF2      <---------ANAC58                        <---------MYB46(3)  --------->ARR11(3)               --      <---------ANAC46                        <---------ATERF1(1) <-----------ARR10              <---  <---------ANAC46                  <---------ANAC58    <---------ARR11(3)                     <-----  <---------ANAC58                  <---------ANAC58    --------->ARR11(3)                    -------  <---------ANAC58                  <---------ANAC46   --------->AHL20(2) *TSS               <------- --------->At4g35610           --------->At4g35610======================HOX2a_HOX2a          -------- <---------At4g35610   --------->At4g35610  <---------LBD16  <---------TOE2(1)              <-------- -------P           --------->At4g35610     <---------At4g35610  <------ZmHOX2a(1)          --------- -----RAV1(1)       <---------At4g35610   <---------DEAR3(1) <---------TOE1(1)       ----------->GT1<   ggtagcttgcgttttccaaatgagcagcgaagaagatgccttgttcggcggatccaaatatatacgaggaccttggctaaaccctagaagtgaaattatt  2956700        <---------AHL20(2)       <---------YAB1    <---------RVE1(1)    <---------CCA1(1)   --------->ARR11(3)   <---------AHL20(1)   <---------ARR11(3)   --------->AHL20(1) -------->DOF2 ------AHL20(2) ----YAB1<------------CBF            ----------->TBP -->AHL20(1)                       --------->YAB1 --AHL20(2)                      <-----------TBP ->AHL20(2)                     <----------DOF2           ------->TEIL -AHL20(2) <---------ZAT6 >>>>>>>>>>WRKY18             --------->ANAC55(2) >ICU4<-----------TBP     <---------ANAC58             <---------ANAC55(2) <----------DOF2      ----- ---------TOE2(3)         <---------ANAC58       --------->AHL20(2) --------->AHL20(2)         <-----   ttaaagatatttattgttagtgaatttgacttgacttttataaatccaagttaaattatgtattttcagattaaaaactttgttgtcaaattagtttata  2956800                                                                                     <-------TEIL                                                                                 <---------------AtSPL8                                                                                 <---------ICU4                                 <---------CCA1(2)                              --------->ICU4   ----------->GT1      <---------------AtSPL8                        <---------ARR11(3) ---->YAB1              --------------->AtSPL8        --------->ANAC46<---------GLK1(2) ----YAB1            <---------MYB46(3)   --------->YAB1              --------->ARR11(3)   atagactgaaaaatgtttttaagttgttagtacttatctctcaattgtattaatccaaaccagtagattatagattttggtgataagtacattgtttcta  2956900                                                                 <---------ATHB12                                                               --------->WOX13(1)                            <---------YAB1         <---------ANAC58                 <---------ANAC58                  <---------ANAC58                 <---------ANAC58               <---------WOX13(1)                 <---------ANAC46     --------->ZAT6         <------ZmHOX2a(2)                ------>ZmHOX2a(1)            --------->MYB52(2)        --------->ANAC46      --------->ARR11(3)        <---------YAB1   aagtttgtatttgttatttgcgtataaattttcaatgtccacactaatagattgcttcttgagatcaatgagttgggacaccaatgttatgttttcctct  2957000                                                         <---------CCA1(2)   <---------YAB1                                 --------->CCA1(2)  ------->TEIL       --------->AHL20(1)              --------->YAB1   --------->YAB1 --------->GLK1(2)     ----------->GT1       --------->ANAC46       <---------YAB1  --------->ICU4       --------->DAG2         <---------ANAC46     <---------AHL20(2)   <----------DOF2<---------TOE2(1)        ---------->DOF2<-------TEIL --------->ICU4           <---------DAG2 <---------TOE1(1)  --------->ZAT6   <---------TOE2(3)   gtgatatttaagtcactcatatgaagtgctttatgatacgagtacgagattatgaactcatatcactaaaaagtatattaagattcaacgagatgtgtat  2957100                                  <---------YAB1                      <---------AGP1                      --------->ARR14(2)                      <---------ARR11(3)                      <---------ARR14(2)                          --------->AHL20(2)                      <-----------ARR10                           <---------AHL20(2)                     <---------ARR14(1)                          <---------AHL20(2)                     <------NtERF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                 <---------YAB1                   <---------ANAC58                       --------->AHL20(2)         --------->AHL20(2)                   <---------ANAC46 --------->AHL20(2)<---------YAB1  --------->AHL20(2)                   <---------ANAC58 <---------AHL20(2)<---------AHL20(2)             <---------AHL20(2)           --------->ANAC58     --------->ATHB51      --------->AHL20(2)          --------->TOE2(3)           --------->ANAC58     <---------AHL20(2)   --------->AHL20(1)    --------->AHL20(2)           --------->ANAC46    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------AHL20(2)   --------->AHL20(2)         --------->MYB46(3)  <---------ICU4   <---------ZAT18    --------->AHL20(1)<---------AHL20(2)         ---------->DOF2------>ZmHOX2a(2)    --------->ANAC58    --------->AHL20(2)--------->AHL20(2)        -------->P<---------LBD16--------->AHL20(1)  <---------AHL20(1)   --------->AHL20(2)        ------>MYB46(1)<------ZmHOX2a(2)     --------->ANAC58    <---------AHL20(1)<---------YAB1        ------>MYB83 <---------CCA1(2)      --------->LBD16   --------->YAB1    --------->AHL20(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------LBD16 <---------AHL20(2)    <---------AHL20(1) --------->YAB1 --------->ALFIN1--------->AHL20(2)   --------->AHL20(2)<---------AHL20(2)  <---------AHL20(2)   caaacataccaacaagcagtggcggatctaagaattattttaatcccgcgcacaatataattaaaaataaaattaaataaaaaatattaatataaaaata  2957200  Previous    Next  AGI:  At5g09510.1    Description:  40S ribosomal protein S15 (RPS15D). Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); similar to RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G04270.1); similar to unknown [Populus trichocarpa] (GB:ABK94243.1); similar to unknown [Populus trichocarpa] (GB:ABK92690.1); contains InterPro domain Ribosomal protein S15, eukaryotic/archaeal; (InterPro:IPR005713); contains InterPro domain Ribosomal protein S19/S15; (InterPro:IPR002222) Range:  from: 2955114    to: 2956674    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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