Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               ------>ZmHOX2a(2)           <---------ARR14(2)           <---------ARR11(3)                                             <---------ANAC58       ---------->DOF2                                             <---------At4g35610  --------->LBD16                                                  --------->LBD16 <---------HSFB2a(2)                                              --------->ANAC46 --------->HSFB2a(2)                                             <---------LBD16 ----MYC3  --------->ARR11(3)                                 <---------DAG2 ----MYC2  --------->ARR14(2)  --------->ATHB12               <----------DOF2      --------->ANAC58 --->MYC2  --------->AGP1      --------->ATHB51         <-----------GT1   <---------ANAC58 --->MYC3  <---------AGP1      -------->ATHB1        <---------------AtSPL3        --------->ANAC46 ---->ANAC58--------->CCA1(2) --------->ICU4         --------------->AtSPL8        --------->ANAC58<- ---->ANAC58<------ZmHOX2a(2) <---------YAB1 ----------------------->TaNAC69(2)  ---------->DOF2 ----   gttccagggcaaagatctagttagaacaaagaattattgatggagaagtttgagttttgtaccgctttccgcagtttcttgatcaaagccataggcttcc  2954500                                                                             ---------->DOF2                                                                 --------->ANAC46         <---------HSFB2a(2)                                     --------->ANAC58         --------->HSFB2a(2)                                     --------->ANAC58       ------>ZmHOX2a(1)                                     <------ZmHOX2a(2)   --------->ARR14(2)                                       <---------ARR11(3)   <---------ARR14(2)   --------->ANAC55(2)                 --------->ARR11(3)  --------->WOX13(1)  <---------AHL20(2)                    --------->ARR14(2) ----------HVH21      <-----------GT1                       <---------ARR14(2) -->ZmHOX2a(1) --------->GLK1(2)--------->MYB52(1)      --------->CCA1(2)<----------ID1            --   tcgtcaatcctctagagaacctatttacataacaaaactgatcagtctaaaaaacaagagacgatctacgaaattgagacaaagctctctggttcaaaga  2954600                                                                                      ----------->HVH21                   <---------ANAC55(2)                                      ===============HOX2a_HOX2a                   <---------ANAC46                        <---------ETT(2) <------ZmHOX2a(2)                 --------->CCA1(2)               --------->At4g35610       --------->ARR14(2)                --------->ARR14(2)             <---------ICU4              <---------ARR14(2)                <---------ARR14(2)         <------ZmHOX2a(2)               <---------ARR11(3)    <---            <---------LBD16  ---------->DOF2  <---------YAB1               --------->ARR11(3)    <--- ------>ZmHOX2a(1)<---------LBD16         <---------ARR11(3)--------->HSFB2a(2)     ------>ZmHOX2a(1) ------->ZAT18  --------->ARR11(1)        --------->ARR11(3)<---------HSFB2a(2)     --------->At4g35610   gtcctctaaccttctacggatacgggaagggaaaagcttgacaagatcatcagtagacatgtcgagaagagcatcaagatcgactcctctgaaggaaaac  2954700                                         --------->HSFB2a(2)                                     --------->MYB46(3)                                    -------->P                                 <---------At4g35610                               <------NtERF2--------->ARR14(2)                              --------->At4g35610          <-----------GT1                              --------->LBD16            <----------TaMYB80                             --------->DEAR3(1)         <---------ARR14(2)                             --------->ANAC46<------ZmHOX2a(2)----------------->AGL2                             --------->RAP2.6(2)        --------->ARR14(2)        --------->ANAC58                             --------->RAP2.3(2)     --------->ANAC55(2)          --------->ANAC46                             ----------->RAV1(1)  --------->DEAR3(1)              --------->ANAC58                            --------->RAP2.3(1) ------>NtERF2 ----------------->AGL1     <---------LBD16      ----------------------->TaNAC69(2)<---------LBD16 ------->TEIL              --------->YAB1   <-      --------->KAN4(2)    --------->At4g35610--------->ATERF1(1)   <----------ID1--------->ANAC55(1)     --------->HSFB2a(1)  --------->ANAC46  <---------ARR14(2)----------------->AG<---------ANAC55(2)    ------->TEIL   <---------YAB1--------->At4g35610 <---------ANAC55(2)          --------->ANAC55(2) -------DOF2     <-----------GT1 --------->ZAT2 --------->LBD16--------------->AGL15   --------->MYB46(3) ------DAG2 <----------DOF2<---------At4g35610------>ZmHOX2a(2)<---------------AGL15 --------->MYB52(1)   tttttgaacgttctcttttttacgattccagccgcagcaacctctggatccgcctacgtattttcccaatacgagaaattacaaacgtaacgacggaaat  2954800                                            --------->MYB46(3)                     ----------->RAV1(1)                       <----------ID1      -------->P                              --------->AtMYB61          ------>ZmHOX2a(2)               --------->MYB52(1)                      --------->ANAC46        --------->ARR11(3)              <---------MYB52(2)                      --------->ANAC46        <---------ARR11(3)         <---------TOE2(3)                    --------->TOE2(3) --------YAB1--------->ZAT6  --------->ICU4>>>>>>>>>>>>>>>>>LFY         --------->TOE1(3)   tttgataaatgatctacactattaagagacaaagattaagaaactaaccattgtttgtttggaattgctgaaaacctaaaaaacaccacagagcctcaaa  2954900                   *TSS                 --------->ANAC58           <---------AHL20(2)                   <------MYB83                 --------->ANAC58        --------->ARR11(3)                      <------MYB46(1)            --------->ANAC58             --------->AHL20(1)                     <---------------AtSPL8            <----------ID1               <---------ARR11(3)                     --------->MYB111(1)            --------->ANAC58            --------->AHL20(2)                      --------->MYB59       --------->LBD16              --------->MYB46(3)                   <-----------GT1     <---------ZAT18              ----------->RAV1(1)                --------->AHL20(2)     <---------LBD16             <----------ID1                      <---------AHL20(2)             <     --------->ZAT18           --------->ANAC46                   --------->TOE2(3) <-------TEIL    -     <---------ZAT14           --------->ANAC58             ----------->GT1     --------------->AtSPL8   <---------RAP2.3(3)         --------->ANAC58           --------->TOE1(2)<---------YAB1 ------->TEIL   cagtgactgcgcaaacgacaaacaacttaacttaagcaacaaatatatacttgggctaaacctagtaacatttatttactattaggtacatgtattttgg  2955000                                                                                                 <---                                                                                                <----                                                                                          <---------GLK1(1)                                                <---------DAG2                            --------->GLK1(1)                     <---------AHL20(2) --------->ZAT18                     ----------->GT1    <-----                    <---------ARR11(3)  <---------ZAT18             --------->ATHB12     <---------ARR14(2)              ------>NtERF2          <---------ANAC46            <------MYB83            --------->ARR14(2)        <----------DOF2              <---------ANAC58            <------MYB46(1)     <---------LBD16     <---------AHL20(2)   ----------->GT1       <----------DOF2 --------->MYB59     <---------LBD16 ---------AHL20(2)  <---------AHL20(1)  <-------TEIL         <---------ARR14(2)  <---------ARR14(2) < -------->AHL20(2) <---------CCA1(2) <---------ANAC58        --------->ARR14(2)  ------->TEIL<-------   attttattttctttgaggcccatatatttggaaaataagacgtgcacaaactttatctcaagggatttggtcattggtgagtgaatctcgggatttgccg  2955100                                          ----------->GT1          --------->TOE1(2)                                       <---------ANAC46           ----------->RAV1(2)                                       <---------ANAC58    --------->AtMYB61 ------MYB52(1)                        <---------ANAC58------->GAMYB------>ZmHOX2a(1) ---GAMYB                       --------->AHL20(2)  ----------->RAV1(1) ----ANAC46    <---------ARR14(2)--------->AHL20(2) ==========================RAV                   - ---------ANAC46  --------->TOE2(3) <---------WOX13(1)<---------ALFIN1                              < --At5g28300   --------->ARR14(2)<---------AHL20(2)--------->MYB46(3)        <---------MYB52(1)------   ttgagtattagatagagaaacctcataatccagatttaattgcctggtaaacaacaacacacctaaactcctgcgagtcgatagttttcttatcaatttg  2955200                                                           <---------ANAC46                                                           <---------ANAC58                                                           <---------ANAC58                                                         <---------MYB46(3)                     -----                                   --------->ALFIN1  <---------TOE2(3)                       <------- -------->MYB46(3)             ---------->DOF2       <---------TOE1(3)                    <---------AHL20(2) ---------MYB52(2)           ------>ZmHOX2a(1)     ---------->DOF2                      <---------AHL20(2) ----->GT1                  --------->TOE2(3)  <---------ZAT6                        --------->AHL20(1)   taacaaacaaacattctctactactgtaatcctcaaagtgtgtctaattgtgttaaaggttgtttgcaactctgcatcatacaaaaacatattattttct  2955300                                      ----------->RAV1(1)                       --------->At4g35610                                   ------>NtERF2                             ---------->DOF2                               <---------LBD16                              --------->ARR14(2)      -                              <---------LBD16       ----------->HVH21     --------->LBD16          --                         ------>ZmHOX2a(2)        <---------At4g35610    --------->ANAC46          --       <---------ANAC58 <---------GLK1(1)         --------->At4g35610   <---------LBD16       <------       <---------ANAC58 --------->GLK1(1)       --------->HSFB2a(2)   <-----------GT1    <---------YAB1 ---------->AGL15      --------->ARR11(3)   --------->GLK1(1)<------ZmHOX2a(2)--------->MYB46(3)   -- ----GT1      <-----------RAV1(2)--------->LBD16<---------HSFB2a(2)--------->YAB1 --------->RAP2.6(2)   atgtatggttcttgctccaggctctgatctccctcggggacaacaggtttccagatgacacagatcgaattgtaaccggaacagccgaatttcgattatc  2955400  Previous    Next  AGI:  At5g09500.1    Description:  40S ribosomal protein S15 (RPS15C). Identical to 40S ribosomal protein S15-3 (RPS15C) [Arabidopsis Thaliana] (GB:Q9FY65); similar to 40S ribosomal protein S15 (RPS15E) [Arabidopsis thaliana] (TAIR:AT5G43640.1); similar to unknown [Populus trichocarpa] (GB:ABK94243.1); similar to unknown [Populus trichocarpa] (GB:ABK92690.1); similar to Os03g0798600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051572.1); contains InterPro domain Ribosomal protein S15, eukaryotic/archaeal; (InterPro:IPR005713); contains InterPro domain Ribosomal protein S19/S15; (InterPro:IPR002222) Range:  from: 2953914    to: 2954919    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g09510.1    Description:  40S ribosomal protein S15 (RPS15D). Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); similar to RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G04270.1); similar to unknown [Populus trichocarpa] (GB:ABK94243.1); similar to unknown [Populus trichocarpa] (GB:ABK92690.1); contains InterPro domain Ribosomal protein S15, eukaryotic/archaeal; (InterPro:IPR005713); contains InterPro domain Ribosomal protein S19/S15; (InterPro:IPR002222) Range:  from: 2955114    to: 2956674    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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