Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------YAB1     <---------YAB1   <---------ICU4   --------->ATHB51              --------->YAB1   --------->ATHB12  <------ZmHOX2a(2)                                                         ------   -------->ATHB1  <---------GLK1(1)                                                          -------  <---------AHL20(2)<---------ARR11(3)                                                       <-------  <---------ATHB51 --------->At4g35610                         --------->AHL20(2)         <----------DOF2  --------->ICU4   <---------At4g35610                         <---------AHL20(2)    <---------At5g28300  --------->AHL20(1)--------->ARR11(3)                  ------->GAMYB               <-----------GT1  <---------YAB1   --------->GLK1(1)                 ----------->RAV1(1)         -------------------- -MYB59    <-----------RAV1(1)--------->YAB1      --------->YAB1       ---------->DOF2<--------------   taaaattattgttatgttgggagatcacagactaataacaactatgacacaataacaacagagatttatattggaaagttagagttttaccgctttgcgc  2952800                                                                                --------->ATHB12                                                                                <---------ICU4                                                                  --------->AHL20(2)  <---------ANAC58                                                <---------AHL20(2)--------->AHL20(2)  <---------ANAC58                                            --------->ICU4    <--------HAHB4 --->LBD16                                                    <---------YAB1    --------->YAB1 -->ANAC46                         ------>ZmHOX2a(1)        --------->YAB1     <---------ATHB12 --LBD16                    <---------MYB52(1)           --------->YAB1       ------>MYB46(1) --->TaNAC69(2)            --------->TOE2(3)          --------->YAB1          ------>MYB83   -------- ---AGL1                 ------>ZmHOX2a(1)    ------>ZmHOX2a(1)<---------ICU4--------->WOX13(1)     <   aatttcttgatgagagccataggcttcctcgttaatcctctactcatcctacaaaataatcaacataattaaacaaaaccaatcatttaaaacaagagtt  2952900                                                                        --------->ATHB12                                                                       <---------YAB1                                                        --------->ARR11(3)  <---------ZAT18      -------->P                            --------->ANAC46        <------ZmHOX2a(2) --->GT1         <---------AtMYB61     <---------------AGL15       --------->ARR11(3)               < ---------AHL20(2)       <------ZmHOX2a(2) <---------LBD16         <---------ARR11(3)               -   atataatctaccaaaatttttggtgggatcaaaaccttcttcttatacgggaagggaagagctcgacaagatcatcagtgggcatgtcaagaagagcatc  2953000                                                                ----------->RAV1(2)                                                               --------->ARR11(3)                                                             --------->HSFC1(2)                                                             <---------HSFC1(2)                                                         --------->LBD16                                                        <---------ANAC46                                                       <---------LBD16                     --------->ETT(2)                                                       --------->At4g35610              --------->GLK1(1)                                                    --------->ZAT2                     <---------ARR14(2)                               --------->KAN4(2)    <---------ZAT2                     --------->ARR14(2)         <----------DOF2      --------->HSFB2a(1)   ----------->RAV1(2)            <---------LBD16 <------ZmHOX2a(2)           ------->TEIL           <---------At4g35610           --------->MYB52(1) ---------ARR11(3)    <----------DOF2               --------->At4g35610          <---------SPL7 -------->ARR14(2)    <---------DAG2      --------->ANAC46 <---------ARR14(2)  <---------At4g35610   gagatcgactcctttgaaggaaaactttttgaacgttctcttcttcgcaagagcagctgcggaaacatctggttcgacttcagcctacggatttcgacag  2953100                                         <---------ICU4                                         --------->ATHB51                                         --------->YAB1                                         <--------HAHB4                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                                 --------->MYB46(3)                          --------->ARR14(2)                                -------->P                    <-------TEIL        --------->ICU4   --------->CCA1(2) --------->MYB52(1)             --------->ATHB12   --------->MYB46(3)  ---------->DOF2      <---------MYB52(2)            --------->ICU4<---------AGP1--------->AHL20(2)          --------->ANAC58                <            <---------YAB1<---------ARR11(3)   ----------->GT1      --------->ANAC58               <-        --------->ARR11(3)--------->ARR11(3)  <---------TOE2(3)  <------ZmHOX2a(2)               ----   --------->AHL20(2)     <---------ARR14(2)  <---------TOE1(3) --------->ARR11(3)           <-------   agaaatttaagaccatgatgggttcaaggatctaacaatcgaataattaaggtttaaagagatggagatcaagaaactaaccattgttcttggtttgaga  2953200                                                                                    <---------AHL20(2)                                                                                    --------->AHL20(2)                                                                                  <---------AHL20(2)                                                                                  <-----------TBP                                                                                  --------->AHL20(2)                                                                                <---------AHL20(2)                                                                                --------->AHL20(2)                                                                            <---------AHL20(2)                                                                            <-----------TBP                                                                            --------->AHL20(2)                                                                          --------->AHL20(2)                                                                          <---------AHL20(2)                                                                        <---------AHL20(2)                                                                        --------->AHL20(2)                                                                        <-----------TBP                                                                      <---------AHL20(2)                                              *TSS                    <-----------TBP                                       <----------ID1                 --------->AHL20(2)                                       --------->ANAC58             --------->AHL20(2)                                       --------->ANAC58             ----------->TBP <-----------TBP     --------->DAG2                   <-------TEIL<---------MYB59  --------->AHL20(1) <---------AHL20(2)    ---------->DOF2                  --------->ARR14(1)            <---------AHL20(1) --------->AHL20(2)  <------NtERF2                     <---------ARR14(2)             <---------ARR11(3) <-----------TBP --------->LBD16                    --------->ARR11(1)        --------->MYB46(3)<-----------TBP ---------LBD16                     --------->ARR14(2)        ------------>CBF<-----------TBP --------LBD16                     <---------GLK1(1)         --------->ANAC58 <---------AHL20(2) ----->GLK1(2)                    ----------->ARR10          --------->ANAC58 --------->AHL20(2) --HSFB2a(2)        <---------TOE2(3)--------->CCA1(2)      ------>NtERF2 <-----------TBP   agccgggaaagtgactgcaactagggttttgctatggagatacgacaagagacataacttggcacccaatatatatatatatatatatatatatacacag  2953300                                         <---------ATHB12                       <---------------AGL15                       --------------->AGL15                      <-----------------AG--------->YAB1                      <-----------------AGL2                      ----------------->AGL3            --------->ATHB51                      <-----------------AGL3 --------->AHL20(2)                      ===============================================================================             --------->ZAT14             --------->AHL20(2)<-----------GT1             <---------ZAT14         ------------>CBF   <--------HAHB4            ------>ZmHOX2a(1)       --------->TOE2(3)   --------->YAB1          ------>ZmHOX2a(2)        --------->ANAC58     <---------ICU4          ============================HOX2a_HOX2a       -------->ATHB1         <------ZmHOX2a(2)         ----------->GT1     <---------ATHB51         =============================HOX2a_HOX2a      --------->ICU4        <---------ARR11(3)         --------->ANAC58    <---------ATHB12        --------->ARR11(3)     <------ZmHOX2a(1)     --------->WOX13(1)<----------DOF2             --        <---------ARR14(2)   <---------TOE2(3)   <-----------GT1--------->ATHB51          ------->TEIL        --------->ARR14(2)   <---------TOE1(3)<---------ICU4  --------->TOE2(3)     --------->TOE2(2)  <---------YAB1      <-----------------AGL1 <---------AHL20(2)<---------YAB1 --------->YAB1       <-   atgtattatagatcctacagtgtttctgtttaaggaaacgtcaataaatatttaccaattattacattattgtctttctaaaataacatatgaatcaata  2953400                    --------->YAB1                <---------------AGL15                --------------->AGL15        <-----------GT1       <<<<<<<<<<GT-3b                        <---------DAG2 <---------ICU4    --------->ARR11(3)                        --------->TOE2(3) <---------AHL20(2)    <---------AHL20(1)                        --------->TOE1(3) --------->YAB1    --------->AHL20(1)                     <-----------GT1  <---------YAB1    <---------ARR11(3)                   <---------ANAC58   --------->ICU4   <---------AHL20(2)                   --------------->AtSPL8  --------->AHL20(2)    <-----------GT1 ===============================MADS_MADS<---------ANAC58 --------->YAB1       --------->ANAC46 ------->AHL20(2)  <---------YAB1 <----------DOF2  --------->YAB1        --------->AHL20(2)         - --------AHL20(2) --------->AHL20(2)   <-----------GT1   ----------->GT1 <---------AHL20(2)--------->LBD16   tttaaatatttttcttcccttataatagaaaaacttctttttttcttaccttataaaaactgataattaaaacatataaatacacaattttcccccaaaa  2953500             <---------YAB1           -------->ATHB1           -------->HAHB4           <---------ICU4           --------->YAB1           <---------AHL20(2)           --------->ATHB51           <--------HAHB4           --------->ATHB12          <---------ATHB51                   --------->AHL20(2)          <---------YAB1       <-----------GT1<---------AHL20(2)                            <--------          --------->ICU4       --------->MYB52(1)                                         --------->ICU4       --------->AHL20(2)     --------->AHL20(2)                                    --------->ANAC46     --------->TOE2(3)----------->GT1     <------ZmHOX2a(1)                         --------->ANAC58< -------->YAB1       <---------TOE2(3)  <---------TOE2(3)                           --------->ANAC58-   aatcaaaacttaattattagtttaatgtaaaattaactgatttaggataaaattggtcatacattttgtatttatcttcgaaatacaaggaaattatgta  2953600                 <---------ARR11(3)        <---------HSFB2a(2)        --------->HSFB2a(2)  <---------ARR11(3)  --------->ARR11(3) --------->RVE1(1) <---------CCA1(1) --------->GLK1(1) <---------RVE1(1) <---------GLK1(1) -------AtSPL8   --------->ARR11(3)                                                         <-------- ---------ARR11(3)         ----------->GT1  --------->ARR11(3)     <---------YAB1          <---------AHL20(2) -------->ARR11(3)--------->CCA1(2)     ---------->DOF2          --------->YAB1   <---------ZAT6<----   cagatatcttatagaaatagatatatagtttgtgaatttcaaaaaagaaattgaaattttcttctatttataaatagggtcattgtgttattttttattt  2953700  Previous    Next  AGI:  At5g09490.1    Description:  40S ribosomal protein S15 (RPS15B). Identical to 40S ribosomal protein S15-2 (RPS15B) [Arabidopsis Thaliana] (GB:Q9FY66); similar to 40S ribosomal protein S15 (RPS15D) [Arabidopsis thaliana] (TAIR:AT5G09510.1); similar to 40S ribosomal protein S15 (GB:P31674); similar to hypothetical protein OsJ_022416 [Oryza sativa (japonica cultivar-group)] (GB:EAZ38933.1); similar to Os03g0798600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051572.1); contains InterPro domain Ribosomal protein S15, eukaryotic/archaeal; (InterPro:IPR005713); contains InterPro domain Ribosomal protein S19/S15; (InterPro:IPR002222) Range:  from: 2952217    to: 2953246    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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