Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <-----------GT1                                                                   --------->AHL20(2)                                                              ----------------->AGL3                                                          <---------MYB52(2)                                                         --------->ANAC55(2)                                                         <---------ANAC55(2)                      <------MYB46(1)                    --------->ANAC58                ----------->GT1                      <------MYB83            ----------->GT1 --------->MYB46(3)     ---------->DOF2            --------->AtMYB61       <---------At4g35610  --------->ANAC58        ------->TEIL -------   tctatgtgaagacaccaaaacgcttggtttcaagttccaactgataactagtaactagtaagtaaccaaaaatataacatttgaatctaaagagtttaaa  2941400                                           --------->LBD16                                          --------->RAP2.3(2)                                          --------->RAP2.6(2)                                        <---------At4g35610                                 XXXXXXXXXXXXXXXXXXX>MIR3434*                                --------->DAG2                    <---------AHL20(2)  --------->At4g35610                                 --------- <------NtERF2      --------->AHL20(2) --------->ANAC46                                     <-------- --->DOF2    ------>ZmHOX2a(1) ---------->DOF2<---------YAB1            <---------AHL20(2)<---------MYB52(2)   ggcctcattagagtcctgaaaatttataacagaaaaagtatcagccgcatgatagttgatagcaacttctccatataatcgtgtttgtaacaaataacga  2941500                                                               <---------ARR11(1)                                                              ------>MYB83                                                            --------->AtMYB61                                                           --------->ANAC58                                                           --------->ANAC58                                                      --------->ANAC46                                                      --------->ANAC58                                                      --------->ANAC58                                                    --------->MYB52(1)           --------->GLK1(2)                                                --------->ANAC58          --------->YAB1                                                --------->ANAC58     --------->AHL20(2) >MYB52(1)         --------->AHL20(2)         ---------->DOF2 ------>MYB46(1)--------->YAB1 ---GT1      ----------->GT1              ---------->DOF2 ------>NtERF2 --------->AHL20(2)   aatcgagagactggatagaaataaactagattgagagtttacaaaaaagaaagcaaacgacaccaaatctataaaataataagaatcaagagttagcctt  2941600                                         <---------ICU4                                         --------->HSFB2a(1)                                        <---------ATHB12                                  ------>MYB83  --------->ANAC58                                  -------->P    --------->ANAC58       --------->ANAC55(2)       --------->ANAC58           ------>MYB46(1)           --------->ARR14(2)       --------->ANAC58         ------->GAMYB   --------->ANAC46       <---------ANAC55(2)      --------->SPL7            --------->AtMYB61           ------>MYB83     <---------MYB52(1)        <---------MYB52(2)           ------>MYB46(1)    --------->LBD16            --------->MYB46(3)          --------->WOX13(1)   <---------ANAC55(2)<------NtERF2 ------->GAMYB------>NtERF2  --------->LBD16                   ---   caactccgtaagcccattcaaggcctcacaataaccaacccaaacattccacgccttataccaatccccaaatacttaatgccttcaacttcgaattgcc  2941700                --------->ARR11(3)               <---------CCA1(2)           <---------MYB46(3)          <--------P         <-------GAMYB        <---------MYB46(3)        --------->MYB55(2)       <---------AtMYB61     <------MYB83     --------->MYB52(2)                                                <-----------GT1     <------MYB46(1)                                    <---------CCA1(1)     <---------MYB46(3)                                 <---------RVE1(1)    <---------DEAR3(1)                                 --------->ARR11(3)    <---------AtMYB61                                  <---------ARR11(3)   <---------MYB52(1)      --------->MYB52(1) <---------PCF2         <---------AHL20(2) ------>bZIP60(2)       <---------At4g35610   --------->PCF2  <-----------GT1     <------------CBF *TSS   acatcgttggtggttgtttatcttggagctaatgggctgattttcatgggcccattagatatttttgctattttttcgacacaaaattgttgaaactcga  2941800                             <----------DOF2                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                           <---------RVE1(1)                          --------->ARR11(3)                ------>ZmHOX2a(2)                                 ------>NtERF2  <---------HSFB2a(2)     <---------ARR11(3)        ----------->GT1  --------->HSFC1(1)      --------->AGP1         <---------ARR14(2)  <---------HSFC1(1)      <---------AGP1 --------->ZAT14   <-------TEIL  --------->HSFB2a(2)    <---------CCA1(2)       --------->ARR14(2)                    <---------ZAT6   gtttctcgaagtaagtgatcggtttttagatctttttggtctcttcagtcggaactgaaaattcatggcgactcgctcgctcttccatagtcttagatgg  2941900                                                ------>ZmHOX2a(1)                                                --------->LBD16                                      <---------ARR14(2)                                      --------->ARR14(2)                                   --------->ANAC55(2)          --------->ZAT6                                   <---------ANAC55(2)        <-----------GT1                     <--                                   <---------ANAC46     <---------WOX13(1)                        ---                                   <---------ANAC58  --------->ICU4                      <---------WOX13(1)         <---------ALFIN1          <---------ANAC58  <---------YAB1            ------->TEIL      <---      --------->ANAC46    ------>ZmHOX2a(1)   ----------->RAV1(2)           <---------YAB1  <--------   tgagtctccctccacctctctatgtctcctactgatttcgtatttgtttcctgagataattgattcacactgcttcttatgaatttagtcgattgacgaa  2942000                                                                                   --------->HSFB2a(1)                                                                                   <---------HSFC1(2)                                                                                 <---------ARR14(2)                                             --------->ARR14(2)      --------->ANAC58             ---                                             <---------GLK1(2)       --------->ANAC46             <--        <---------HSFB2a(2)                <---------YAB1          <---------TGA2(2)             ====        --------->HSFB2a(2)            <-----------TGA1           ----------->TGA1 <---------HSFB2a(1)        <---------LBD16                <-----------HVH21          ----------->HVH21--------->HSFC1(2) -------ICU4                          --------->YAB1       --------->SPL7        --------->ARR14(2) ------>YAB1                        <---------ARR14(2)   <---------SPL7     --------->MYB52(1)   ==== ------ATHB51--------->ANAC58       --------->ARR14(2) --------------->AtSPL3 --------->YAB1     <--- -TOE2(3)    --------->ANAC58    --------->DEAR3(1)  --------->ANAC46--------->ANAC58      --------->REM1(2)   taatggtgttctcggaagcaatttcattcgaaacgccgaatcgtcacgattctccaagtcgtacaatgctgacgcagcaatcggaaactcccttgtcgag  2942100                              --------->ARR14(2)                              <---------ARR14(2)                              <---------GLK1(2)                  ------>ZmHOX2a(2)                  ==================HOX2a_HOX2a                 <------ZmHOX2a(2)                 ===================HOX2a_HOX2a                <---------ARR14(2)         ---------->DOF2      <---------ARR11(3)      <------ZmHOX2a(1)      <------ZmHOX2a(1)      ===================HOX2a_HOX2a      ==================HOX2a_HOX2a ------>ARR14(2)--------->ARR11(3)                         <---------ANAC58<---------HSFB2a(2) -------ARR14(2)<---------ARR11(3)                         <---------ANAC58--------->HSFB2a(2) ========================HOX2a_HOX2a             --------->ANAC46        --------->HSFB2a(2) =======================HOX2a_HOX2a              <---------HSFB2a(2)     <---------HSFB2a(2) ---ZmHOX2a(1)  --------->ARR14(2)               --------->HSFB2a(2) --------->ZAT14   gaatcggaggagaaagacgatctgaagagcaggattttcagattgagacttccgaaacgtagcgcgactactgttctcgagaaatggattggagaaggga  2942200                                    <---------ARR11(3)                            ======================HOX2a_HOX2a                           =======================HOX2a_HOX2a                           --------->GLK1(1)                           <---------GLK1(1)                           <------ZmHOX2a(2)                          <---------ARR11(3)                    --------->ANAC58                          --------->ARR11(3)                    --------->ANAC58                          --------->ARR14(3)                   <---------ZAT18                          --------->ARR14(2)                   --------->ZAT18                          <---------ARR14(2)                --------->ANAC58                         <---------GLK1(1)                  --------->ANAC46                     --------->LBD16--------->ARR11(3) <---------MYB52(1)                           -                ------->TEIL------>ZmHOX2a(2)         <-------GAMYB                                <-                <---------GLK1(1) XXXXXXXXXXXXXXXXXXXX>MIR395A/D/E                      <---------ICU4             <---------ATHB12     XXXXXXXXXXXXXXXXXXXX>MIR395B/C/F      --------------->AtSPL3 <-----           --------->WOX13(1)   ---------->DOF2   --------->ANAC46      <---------TOE2(3)      <-----         <---------YAB1  --------->GLK1(1) <------ZmHOX2a(1)--------->ANAC58           <------ZmHOX2a(2)   atcaaatgactatcaatgaactccgagagatctccaaagagcttaggagaactcgccgttacaagcacgctcttgaggtactaacatcgatcatttcctt  2942300  Previous    Next  AGI:  At5g09450.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G02820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70736.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 2941799    to: 2943669    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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