Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->ANAC58             --------->ANAC58                                                           --------->ANAC58             <---------ANAC55(2)                                                        <----------ID1 --------->YAB1                                                                       --------->CCA1(2) <---------ICU4                                                    <---------AHL20(2)--------->ARR11(1) ---------ATHB12          --------->TOE2(3)                       --------->AHL20(2)--------->YAB1  > ------>WOX13(1)    --------->YAB1 ------->GAMYB                 <----------DOF2   <---------ATHB12 > ------GT1   --------->ANAC58  --------->MYB46(3)         ---------->DOF2    --------->GLK1(2)      > >CCA1(2)    --------->ANAC55(2)----------->RAV1(1)      --------->YAB1     <---------GLK1(2)       >   caatcatgttttagtaagtaattcataacatcaacaacagaaatatgtataaatgtcaataaaagcgatttaatgacagattccaatgatacgacaagag  2886500                                                                              <---------ARR14(2)                                                                              --------->ARR14(2)                                                                     <---------MYB46(3)                                                                     <-----------RAV1(1)                                                                    <---------WOX13(1)                                                                    <---------YAB1                             ---------->DOF2                      --------->ATHB12                            --------->YAB1                       --------->ICU4            --------->At4g35610                             <---------At4g35610            <---------At4g35610         <---------LBD16     ----------->RAV1(2)  <---------ANAC58          --------->ZAT14------>ZmHOX2a(1)--------->LBD16   =====================RAV          <---------ZAT18--------------->AGL15             ------->TEIL    <---------ANAC46 >>>>>>>>GATA-4          <---------------AGL15          --------->ANAC58   <---------ANAC58 >>>>>>>>GATA-2         --------------->AGL15           --------->ANAC58   <---------ANAC58 >>>>>>>>GATA-3         <---------------AGL15 <------ZmHOX2a(1)  <---------YAB1  <---------ANAC58 >>>>>>>>GATA-1    ------->TEIL      ---------->DOF2    --------->AtLEC2  <------NtERF2   tggattgaacagtgagctatggacttcctataaaagtcaaaatgcggaggaacaatgcatgcacctgatgattgttggcgtattcgtgctgaacaaaact  2886600                                                                                                 <---                                                                                            <--------                                                                                            ---------                --------->LBD16                                                             <--------                ------>NtERF2                                                              <---------ARR14(2)               --------->ANAC46                                                            ----------               --------->ANAC58                                                           <------NtERF2               --------->DEAR3(1)                                                 --------->ARR14(2)<               --------->ANAC58                                                   <---------ARR14(2)<              --------->ERF1                     <---------ANAC46                <------ZmHOX2a(1)---              <------NtERF2                   --------->GLK1(2)               =======================              --------->ATERF1(1)            <---------ARR14(2)               <--------P --------->LBD16              --------->RAP2.3(1)            <---------GLK1(2)           <---------O2   <---------ANAC46             <---------RAP2.3(1)   ----------->GT1             <---------ANAC46 <------MYB46(1)  <---             <---------ATERF1(1)  <---------DEAR3(1)           --------->ALFIN1 <------MYB83---------            --------->ARR14(2)    <---------RAP2.6(2)      ---------->DOF2 --------->ALFIN1--------->ARR14(2)            <---------ARR14(2)   --------->RAP2.6(3)  ------->TEIL   <-----------HVH21 <---------LBD16   agagagtgtctctggctccgccatggtattacagagacggctaattggattctgtgaacctcgaagcggggggtcatgtggtaggatttggcggatatgc  2886700      --------->ALFIN1     <-------PIF5     ------->PIF5     ------->MYC3     <-------MYC3     <-------MYC2     ------->MYC2    <---------ANAC46    <---------ANAC55(2)    <---------O2    <---------ANAC58    --------->O2    <---------bZIP60(2)    <---------ANAC58    --------->TGA1a    <---------TGA1a    --------->ANAC55(2) ----------->HVH21 ------ANAC58 --TaMYB80      <<<<<<<ZML2                                                   ------>ZmHOX2a(2) >CCA1(2)    <---------HSFB2a(2)                                             <------ZmHOX2a(2) -GLK1(1)    ------>ZmHOX2a(1)                                              <---------AGP1 >TaMYB80    --------->HSFC1(1)                                             <---------ARR14(2) -----------HVH21     <---------ARR14(2)                                    --------->ARR14(3) -----------------PIF3(1)                          --------->ZAT14          <---------ARR14(3) --->NtERF2  <---------HSFC1(1)                    <---------ZAT14          --------->ARR11(3) =============MYC_MYB --------->ARR14(2)  <---------ARR14(2)                --------->ARR14(2) ------ANAC58--------->HSFB2a(2)          --------->GLK1(2)   <---------YAB1<---------ARR11(3) >GLK1(1)<---------PCF2          <---------ANAC46  ---------->DOF2   ---------->DOF2          -------   cgagtcacgtggctcctagaaccgaaaccgaggttgtgtctgagaatattgagtaaagtcgattttgatgaaaaagaagatctcaaatgcagagccattt  2886800                                                                                   --------->ARR14(2)                                                                                   <---------GLK1(2)                                                                                   --------->ARR11(3)                                                                                   <---------ARR14(2)                                                                               --------->SPL7                                                                              --------->SPL1(1)                                                                              <---------SPL1(1)                                                                             <---------SPL7                                                                             <---------SPL1(2)                                                                             <---------RAP2.6(3)                                                                            <---------ANAC58                                                                           <-----------------------TaNAC69(2)                                                                *TSS       --------------->AtSPL3                                                             --------->ZAT14<---------ANAC58       --                                                             <---------ZAT14<---------ANAC46      <--                                                         --------->DAG2   --------->ZAT18     ------>ZmHOX2a(1)                                                   <---------ANAC55(2) <---------ANAC58      --------                                                   ----------->GT1<---------MYB46(3)         -------- -->ICU4   <---------YAB1           <---------MYB46(3)  ---------->DOF2<---------ANAC58<---------YAB1   ttgattttagaatttgatagagaatggatagagagagattgttgaaaactgaaacgtgaaaagtgtagttgttaagtgccgtacagattttgattcctta  2886900                                                                          <---------AHL20(2)                        --------->ARR14(2)                         --------->ZAT6                        <---------GLK1(2)                         --------->ZAT14   --------->DAG2      <------ZmHOX2a(1)                          <---------ZAT14  ---------->DOF2    <---------TOE2(3)                           ----------->RAV1(1) ------->YAB1        <---------TOE1(3)                          --------->ANAC46 <---------ZAT18 -------ATHB12 <---------AHL20(2)                             --------->ANAC46   --------->ZAT18 ->TOE1(3)     --------->AHL20(2)                   --------->AHL20(2)   --------->AHL20(2) ->TOE2(3)   <----------DOF2                  ----------->GT1--------->ZAT18   --------->PCF2   atcataaagtggaatcttttattaaggaatcgcgaacaaggccttcgtctgtaaaaatataagcccacaacactattaaatggcccactatataaaacga  2887000                                                                    --------->CCA1(2)                                                                    <---------GLK1(1)                                                                   <---------ARR14(2)                                                                   --------->ARR14(2)                                 --------->ARR14(1)                <---------ARR11(3)                                --------->ARR14(2)                 --------->ARR11(1)                                <---------GLK1(2)                  --------->ARR11(3)                                --------->ARR11(3)               --------->ANAC58                                <---------ARR11(3)               --------->ANAC58                                <---------ARR14(2)               ----------->ARR10                       <------MYB83                  <-----------HVH21               <----------DOF2--------->ANAC46 --------->ZAT6--------->ANAC46             ---------->DOF2      <------ZmHOX2a(1)<------MYB46(1)    <---------DAG2     --------->ANAC58          <----------DOF2   <---------ICU4      ----------->GT1    <----------DOF2    --------->ANAC58     <---------WOX13(1)<   cttcatcaggacccaaacttttatttggttacaagatactctcactttaacacgaggtcacacacacaagatatgcctaaaatgaatgactttaaagtca  2887100    --------->ARR14(2)    --------->ARR11(3)    <---------ARR11(1)    <---------ARR14(2)                              ----------->RAV1(1)    <-----------ARR10                             <---------ZAT14    <---------ARR11(3)                            <---------ZAT18                  <-----------GT1   <---------CCA1(2)              ----------->RAV1(1)        <---------At4g35610 --------->AHL20(2) -------TEIL         <----------DOF2              --------->ZAT14                <---------AHL20(2) <   catccatatcttcacagttccaactttgccaaaatccaacatttagaaacagagcaccattttggctgatataacaagagaaattaaacaactcttgata  2887200                                                          ------>ZmHOX2a(1)                                                    <-----------ARR10                                                    --------->ARR14(2)                                                    <---------ARR14(2)                                                    <---------ARR11(3)            --------->ATHB12 --------->ANAC46       --------->ARR11(3)          <---------WOX13(1) --------->ANAC58  <---------ZAT14        --------->ATHB12     --------->ANAC58  --------->ZAT14      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ANAC46  <----------DOF2       <---------WOX13(1)   <---------AHL20(2)     ------>ZmHOX2a(2) <---------At5g28300<---------DAG2      --------->ATHB12   <-----------GT1<---------YAB1        <---------ICU4   --------->ANAC46          <---------ICU4 ---------ICU4<---------WOX13(1)----------->GT1--------->At4g35610 ----------->GT1<---------YAB1   actaattacttcattgattgatgaatgatccaagcagtttaatattcacagcagtatctcctcaactttttgttaaaacaacttatgattgcatagaaac  2887300                                                                                                   --                                                                                                   <-                                    ------>ZmHOX2a(2)                                              <-                                   =============HOX2a_HOX2a                                    ------                                   <------ZmHOX2a(2)                                           <-----                                  --------->AGP1                                              -------                                  --------->ARR14(2)                                         <-------GAMYB                                  <---------ARR11(3)                                         <------NtERF2                                  <---------ARR14(2)                                        <--------                     --------->WRKY18(1)                                                    <--------                 ---------->DOF2  --------->ARR14(3)                                       --------->ALFIN1      --------->ANAC58            --------->ARR11(3)         --------->CCA1(2)             <---------DREB2C(2)      --------->ANAC58            <---------ARR14(3)    ---------->DOF2                    <---------DEAR3(1)     <-----------------AGL1     ----------->ARR10    <-----------HVH21              --------->CCA1(2)    --------->MYB52(1)<<<<<<<<<WRKY18    ------>ZmHOX2a(1) --------->YAB1          <----------ID1<---   acatgagaacggaattggcaaaagtcaaggccatgagatcttcctgtttctactatgtcaaagataaacgagatagagagagagagagacaaggcggtgg  2887400  Previous    Next  AGI:  At5g09300.1    Description:  2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative. similar to 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT1G21400.1); similar to Os12g0183100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066324.1); similar to 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95968.2); contains InterPro d Range:  from: 2884180    to: 2886864    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g09310.1    Description:  Identical to Gamma-secretase subunit PEN2-like protein [Arabidopsis Thaliana] (GB:Q9FY84); similar to unnamed protein product [Vitis vinifera] (GB:CAO46410.1); contains domain PD337913 (PD337913); contains domain PTHR16318 (PTHR16318) Range:  from: 2887193    to: 2888539    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version