Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->ARR14(2)                                                           <---------ARR14(2)      <-----------RAV1(1)                                                       <-------TEIL                --------->MYB52(2)                                                    <---------ANAC58               <---------MYB46(3)                                                    <---------ANAC46    <<<<<<<<<GATA-3  <---------YAB1                                    <------MYB46(1)     <---------GLK1(1) -NtERF2                                            <---------ANAC58    <<<<<<<<<GATA-2 ---RAP2.3(1)                                       <------MYB83        <<<<<<<<<GATA-1 --RAP2.6(2)                                       <---------MYB46(3)   <<<<<<<<<GATA-4 --ANAC46                                          <---------------AtSPL8------>ZmHOX2a(2) --RAP2.3(3)                                       --------->MYB59      <------ZmHOX2a(2) --DEAR3(1)                                       <---------ANAC46     <---------ARR11(3) ->ATERF1(2)                                   --------->ALFIN1        --------->ARR11(3) >ATERF1(1)                                    <-----------RAV1(1)     <---------AGP1 >HVH21                                     <---------AtMYB61         <---------CCA1(2)             < >TGA1               --------->YAB1        ----------------------->TaNAC69(2)  --------->LBD16 <-----   gattttgattctggcgatgggaatgagaagatgatgtgagagagtgatggtgttgggtacatatccatacctagatctctcccgattgttgctaatcggt  2856300                                                                                   ------>ZmHOX2a(2)                                                                             ------>ZmHOX2a(2)                                                                             ========================                                                                            --------->GLK1(1)                                                                            <------ZmHOX2a(2)     <--                                                                            =========================         <------ZmHOX2a(2)                                                 <---------AGP1        <---        --------->ARR11(3)                                                 <---------ARR14(2)    <--- --------->ARR14(2)                                                        --------->ARR11(3)    <--- ------->TEIL                                                              --------->ARR14(2) <------ <---------ARR14(2)                                                       <---------CCA1(2)<---------YAB1 ---------CCA1(2)                                                         <---------ARR14(1)--------- ----MYB52(1)    <---------ANAC46                                ---------->ID1    ==================   atgtatctgagatcaattctcgtgttggaacgaagtatagcaatggggttttcgaatttctcgtcttgttgttatcggatctcgatcgggtttttgattg  2856400      --------->At4g35610    <------ZmHOX2a(1) ==========HOX2a_HOX2a          <-----------GT1                       <---------YAB1 --------DOF2         --------->ARR14(2)                            --------->YAB1 ==========HOX2a_HOX2a<---------ARR14(2)                            <---------ICU4 ------ANAC46       --------->LBD16                                --------->ICU4 ------ANAC58      --------->LBD16                              <------NtERF2 ------ANAC58      <---------ANAC46                            --------->LBD16 ---WOX13(1)      <---------LBD16                             --------->LBD16            --------->O2 >ATHB12   XXXXXXXXXXXXXXXXXXXX>MIR781                       <---------LBD16             <---------O2 ==========HOX2a_HOX2a<---------GLK1(2)         --------------------->WRI1               <---------ANAC46   cttgtaggagcttagaatttgccggatactggtttctccgtcttcatcaacgtcgtctgtatcgccggaattatgagtgagattgagagtctcgtggaga  2856500                                                                                   --------------->AGL15                                                                                   <---------------AGL15                                                                                   ==================                                                                                  <-----------------AGL1                                                                                  ----------------->AGL1                                                                                  ----------------->AG                                                                                  --------------->AGL15                                                                        <----------DOF2                                                                        <---------DAG2                                           ------>ZmHOX2a(2)           <---------ANAC58     <--------P                                          --------->GLK1(1)            <---------ANAC58  <---------TOE2(3)                                         *TSS                        <-----------GT1 <----------DOF2<                                   <---------GLK1(1)          <---------MYB52(1) <-----------------AG                             <---------ARR14(2)               ---------->ID1     ====================               <----------DOF2     --------->GLK1(1)         <-------GAMYB       <-----------------AGL2            --------->ANAC58 --------->ARR14(2)             --------->MYB52(2)   <-----------------AGL1            --------->ANAC58<---------GLK1(1)               <---------MYB46(3)  <-----------GT1     <     <------ZmHOX2a(2)      --------->GLK1(1)             <---------MYB52(1)   <-----------GT1  <----   agaagagatcgagcaagctttaatggaagcatttccgatttctgatctctcgtcttcttcgttcgttgtttttgctttttatttcccctttagggtagct  2856600                                           <---------------AGL15                                           --------------->AGL15                                          <-----------------AGL2         ------>MYB83                     <-----------------AGL3         ------>MYB46(1)        ---------->DOF2        ----------->GT1       <---------MYB59         --------->AHL20(2)     ------>ZmHOX2a(2) ===========================================================MADS_MADS ---------ANAC58               <---------AHL20(2)   --------->ARR14(2) ==========================================================MADS_MADS       <------MYB83           <-- ---------ANAC58   --------->MYB52(1)  --------->KAN4(2)    --------->KAN4(2) ------------>CBF    <-- ------DOF2--------->YAB1 --------->AHL20(2)        <---------ARR14(2)     <------MYB46(1)        <--   ttacttgaaccaaacataacccatcggtttaaattaaagaacatactctatttggatcggtttattccgatttcatttggttcaattcgatattagtttg  2856700                                                         <---------ZAT14                                                    <---------ZAT14                                                    --------->ZAT14                             -----                                                    <---------REM1(2)                          ------                                                    --------->ZAT18                        --------->At4g35610                                                  <---------ZAT18                          <---------At4g35610                                                  <---------ZAT14                       <---------At4g35610                                                  --------->REM1(2)                  --------->ATERF1(1)                                         --------->DEAR3(1)                          <------NtERF2                                         --------->DREB2C(2)                        ------>NtERF2                                         --------->RAP2.3(2)                        <---------ERF1                                         --------->RAP2.3(3)                        <---------RAP2.3(1)                                         *TSS     --------->ZAT14                   <---------ATERF1(1)                            --------->LBD16    <---------ANAC46                    <---------RAP2.3(3)                           --------->LBD16------>NtERF2  --------->ZAT14           <---------RAP2.3(2)                     <---------ANAC58   --------->RAP2.3(1)                        <---------RAP2.6(2)  ---------->ID1     <---------ANAC58   --------->ATERF1(1)                        <---------DEAR3(1) -------ANAC58     <-----------GT1      --------->ORA47(2)                         <---------ANAC46 -------ANAC58  --------->MYB52(2)      <------NtERF2  --------->ANAC46           --------->RAP2.6(3) -------ANAC46  <---------MYB46(3)     <---------ATERF1(1)          <---------GLK1(2)<---------At4g35610   gcttgtcccataacatgtttgttacttccccgaggtttaagcgccgactctgtgtacactgcagagcttcgattcttctccaatggcggcttctgctaca  2856800                       <---------ANAC58                       <---------ANAC58                  <---------ICU4                 --------->ICU4                                                                     <                 <---------YAB1                               <----------DOF2        <---------TOE2(3)          <---------ANAC46                             --------->YAB1       <----------DOF2         <       <---------TOE2(3)                           --------->AHL20(2)     --------->LBD16           < ---->TOE2(3)  <-----------GT1                     <---------AHL20(2)     <---------At4g35610       < --->REM1(1)----------->GT1 <---------CCA1(2)  <---------AHL20(2)--------->ZAT6      <---------TOE1(3)   ttaatgtctatggtttgtaactattgcttcttatcttcttcgtttctatgtaatttatcatgctctttcactattccgcttattttcaaggttttcttag  2856900  <---------MYB52(1) <-----------TGA1 <-----------HVH21                         <---------ANAC58 ---------ANAC58                           <---------ANAC58               --------->DAG2 ---------ANAC58 ------->MYC3 --------->MYB59                            ---------->DOF2 ---------ANAC55(2)           <---------TOE1(3)               <---------ANAC58 ---------ANAC46 <-------MYC3 <---------TOE2(3)               <---------ANAC58            <---------MYB46(3)   ttccgtcagcatttatcaacgtgtttgtgatttaggtttcaaattgggtttgaaatcactaatttcttacttacaaaaagtttctatttcggtgattcag  2857000                                   ===================================HOX2a_HOX2a                            <---------ARR14(2)                          --------->ATHB12                            <---------ZAT14                            <---------YAB1                            --------->ZAT14                            --------->ICU4                            --------->ARR14(2)                    --------->ANAC55(2)              <-                        ------>ZmHOX2a(2)                         <---------ANAC55(2)             <--                        ==================HOX2a_HOX2a          <------ZmHOX2a(2)                  <--                      <---------ARR14(2)                      --------->ARR11(3)               <-----                      --------->ARR14(2)               --------------->AtSPL8               <--------          <--------P  <---------AGP1                   <---------------AtSPL3               ---------    <---------YAB1    ------->TEIL ------>ZmHOX2a(1)   <---------------AtSPL8   <---------MYB46(3)<--   tgttttctgatggtagtttttatggatctgtatactcctctaagtctcgttggaaaatttgtacgatcatgtaatgtttgagttgttcataagtttaatt  2857100 --------WOX13(1) -------ANAC58                                                                               -------- -------ANAC46                                                                              --------- ----WOX13(1)                                                                          ---------->DOF2 -AHL20(2)                                                                          <-------MYC3 >AHL20(2)                           <---------At4g35610                            ------->MYC3 -------ANAC58   <---------ZAT18    ------->TEIL                                  <-------TEIL   gcttgattccacaattttgagcacttgtttatgcattgaatctgactgaatgttaactatgaacaatttttgttgacgaacaggcacatgaaagaaaagt  2857200  Previous    Next  AGI:  At5g08770.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO71661.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68197.1) Range:  from: 2855639    to: 2856541    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g08780.1    Description:  histone H1/H5 family protein. similar to HON4, DNA binding [Arabidopsis thaliana] (TAIR:AT3G18035.1); similar to HON5 (HIGH MOBILITY GROUP FAMILY A 5), DNA binding [Arabidopsis thaliana] (TAIR:AT1G48620.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79049.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216) Range:  from: 2856741    to: 2859007    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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