Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     <---------ANAC58                                   <---------ANAC58                          <------NtERF2         --------->HSFB2a(2)             <---------GLK1(1)  <---------MYB52(1)             --------->GLK1(1)<-----------RAV1(1)  ---------->DOF2    --------->HSFB2a(1)         --------->YAB1  >>>>>>>>>>>>>>>>>LFY   <---------HSFB2a(2)   <---------HSFC1(2)        <---------YAB1   ------>NtERF2      <---------ZAT18           --------->HSFC1(2)      <---------ICU4  <---------ANAC58      <---------ZAT14           <---------HSFB2a(1)     --------->ICU4   <---------ANAC58      --------->ZAT14----------->RAV1(1)   <---------ANAC58 ---->At4g35610      --------->ALFIN1   <-----------GT1  <-------TEIL----------->ARR10--------->TOE1(2) -----At4g35610    <-----------RAV1(1)<-----------HVH21 --------->CCA1(2)        <---------ANAC58   ctgtttcattatcagaaatctctgtggtgccactgttgtttgtcactgctctcgaaagatacaacataggggagtttctcgttgagttccaacgagaaga  2851000              --------->ARR11(3)              <---------ARR11(3)            --------->HSFB2a(1)          <---------MYB52(1)                              ----------->RAV1(2)         --------->LBD16                                  --------->At4g35610        --------->HSFB2a(2)                               <---------At4g35610        <---------HSFB2a(2)                             <---------ALFIN1       <---------LBD16           <----------DOF2     ----------------->AGL1           ---------->DOF2     --------->ARR14(2)       ------->TEIL         --------->WRKY12                 --------->AtMYB61     <---------ARR14(2)    <---------ATHB12        --------->WRKY38(1)           --------->ZAT6  ----   gagattgaatccggaagttcttgaggctaatgaagctttactagtcagtctcgttgccccatctgaaacacattgagacaataacaccaaaagtttcaat  2851100                <----------DOF2               <---------ICU4                                                  ----------------->AGL2          --------->ARR11(3)                                             --------->LBD16          <---------ARR11(3)                                            <---------HSFB2a(2)     <----       <---------GLK1(2)                                     <-----------GT1   <-----------------AGL1    <---------HSFB2a(2)                              ------>ZmHOX2a(2)  --------->HSFB2a(2)     -----    --------->HSFB2a(2) <---------ATHB12           <---------AGP1<---------ICU4<-----------------AG ----->YAB1   <---------YAB1  <----------DOF2     <---------CCA1(2)    <---------LBD16--------->YAB1   cttcatctagaatatcatctttactaatcaagctttcaaaagtttcacacttggatctaaattttactaattgtccggaaaaccccaatcggaaattgga  2851200                                                           <------MYB83                                                           <------MYB46(1)                                                          --------->ALFIN1                                                         <<<<<<<<<MYB98                             -                                                         --------->ALFIN1                          <-                                                         <--------P     <---------TOE2(3)          --                            --------->GLK1(2)           <-------GAMYB  --------->MYB52(1)          -- -----ARR14(2)           --------->ANAC58    --------->MYB52(1)     --------->YAB1               ---- ---->ARR14(2)           --------->ANAC58    <-----------GT1<---------ANAC46<-------TEIL  <---------YAB1   ttcgacgatttagagtagaacagagacaagaatcgacttgaacaatataacgaaactgggttggggagaagaataacgtacaagagaagggtatgagaga  2851300                                                     --------->LBD16                                                    <---------ANAC46                                                    --------->ETT(1)                                                   <-----------------AGL1                                                   ----------------->AGL1            --------->MYB52(1)                --------->ATHB12       <------ZmHOX2a(1)                     --------->ICU4 <-------TEIL--------->RAP2.6(3)        --------->LBD16                                  <---------ANAC58 -------->CCA1(2)             --------->AHL20(2)   <---------LBD16               <------NtERF2 --------ARR14(2)           <----------DOF2  <---------HSFB2a(1)               <---------ANAC58 ------->ARR11(3)     --------->At4g35610 <------NtERF2                        <---------ANAC58 ----- ------->ARR14(2)     <---------At4g35610--------->LBD16               <---------AHL20(2)<---------ANAC58 ------->ARR10--------->MYB46(3)       <---------LBD16<------NtERF2<---------RVE1(1)  <---------CCA1(2)   agatacagaggagagaacggccattgctgactttatatatcgccggaatgtttgccggagatggaagtgatattttttgaggcgtctcgtttcttatgga  2851400                                           --------->MYB52(1)           --------->ANAC46               ----------->HVH21   <------ZmHOX2a(1)           --------->ANAC58               <---------SPL7     <----------ID1           --------->ANAC58           <------MYB46(1)     ---------->DOF2                    <-------GAMYB      --------->PCF2                  <------MYB83--------->ICU4                          <---------LBD16    <---------ANAC58                 <---------AtMYB61  <---------YAB1             --------->MYB52(1)    <---------ANAC58                 --------->MYB59  --------->YAB1        <---------At4g35610 -->TEIL <---------ALFIN1    *TSS  <---------MYB52(1)<---------YAB1        <---------ALFIN1 <--------   tgttttgggttccacgctctctacaatttggacaaacgtttggtctgacggacttatgataaaaggacaaaacgcttccactgccaaacagacgcggttg  2851500                                                      --------->At5g28300                                          <---------ICU4                                         --------->AHL20(2)                                         <---------AHL20(2)                             --------->TOE2(3)                                     --------->AHL20(2)    <---------ICU4               ------->GAMYB                                     <---------AHL20(2)   --------->ICU4               --------->MYB46(3)    <---------ANAC58           <-------GAMYB         ----------->GT1               <---------MYB52(1)    <---------ANAC46           --------->At5g28300--------->MYB52(1)         <---------GLK1(2)    <---------ANAC58          ----------->GT1<---------AHL20(2)            --------->ICU4 -MYB46(3)<------------CBF   <---------ANAC46<-----------GT1               <---------YAB1          --   agactagcgtgcgattgtcgaaaaatgcgatgcggttaaataaatatttacatagcggtaaaaatcacaaatatttcatgattctgttaaccacaactat  2851600                                                                          <---------TGA1a                                                                          ===========================            --------->ANAC46   ---------->ID1                --------->DAG2            <----------ID1 <----------DOF2                  ========================bZIP_DOF --------->GT1             <---------DAG2                   ---------->DOF2        >>>>>>>ZML2  -----   attgtaaaatttatgcgccaaaatttggactttttcgcttcccatttttctctaggcactgaaaaagtcacaactgatgtgagttctagcgatatcaaat  2851700                                                                 <----------DOF2                                                                <---------ANAC58                                                                <---------ANAC58                                                            <---------ANAC58                                                            <---------ANAC58               <------ZmHOX2a(2)                         <-------TEIL              --------->ARR11(3)                        --------->ARR14(1)              <---------ARR11(3)                       --------->ARR11(1)            --------->ICU4                             <---------ARR14(2)            ----------->ARR10                          --------->ARR14(2)          ---------->DOF2           <---------MYB46(3) <---------GLK1(2)  --------->ARR11(3)      --------->AHL20(2)      <---------ARR11(3)  <---------GLK1(2)    --------->YAB1         ---------->DOF2   <---------ANAC46                    <  <---------ARR11(3)  <---------YAB1----------->GT1  ----------->ARR10                --------->GLK1(2) ====================bZIP_DOF      --------->ALFIN1<------ZmHOX2a(2)                 <---------GLK1(1) ---->GLK1(2)--------->YAB1   <<<<<<<<<<<<<<<<<LFY--------->ARR11(3)                 <---------GLK1(2)   tctagatttttgcaaagatcatctatgatataatacagtggtgaatttgaaagatcagattcgcttgcttttaatctgttttagtgggaatctcaacagt  2851800                                                                            --------->MYB52(2)                                                                        <---------ZAT6                                                                      <------MYB83                                                                      <------MYB46(1)                                                                     <---------AtMYB61                                                                     --------->MYB111(1)                                                                     <---------MYB46(3)                                                                     <---------DEAR3(1)                                                                     --------->MYB111(2)                                                                     --------->MYB46(2)                                                                     --------->MYB55(2)                                                                    <--------P                                                                    <---------MYB55(1)                                                                  <---------MYB46(3)                                                                  --------->MYB55(2)                         --------->At4g35610                      --------->ATHB12                         <---------ZAT14          <----------DOF2<---------AtMYB61                ----------->GT1   ---------->DOF2 <---------DAG2 <XXXXXXXXXXXXXXXXXXXXMIR4227 ---------AHL20(2)       --------->ZAT14       <---------ALFIN1  --------->ALFIN1 ---------->DOF2----   ttttatttatccaaaaaactgaaaaactgcagaagaaaaagaacaatctacacttttcagaaaacgagtggttggtgttagtggcaaagaagagaactat  2851900  Previous    Next  AGI:  At5g08740.1    Description:  NDC1 (NAD(P)H DEHYDROGENASE C1); NADH dehydrogenase. Identical to Probable NADH dehydrogenase, chloroplast/mitochondrial precursor (NDC1) [Arabidopsis Thaliana] (GB:Q8GXR9;GB:Q6KC19;GB:Q93ZN8;GB:Q9C5A3); similar to NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2), NADH dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G29990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71655.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); contains InterPro domain Pyridine nucleotide-disu Range:  from: 2848507    to: 2851429    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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