Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    --------->REM1(1)                                                       <---------YAB1                                                       <---------AHL20(2)                                                      --------->AHL20(1)                                 --------->ANAC58     --------->AHL20(2)  <---------ZAT14                   <-------GAMYB --------->ANAC58     <---------AHL20(1) <-----------HVH21         --                  ================================HOX2a_HOX2a--------------->AtSPL3          <-------     ====================HOX2a_HOX2a            --------->HSFB2a(2)      ============================    --------->ANAC58    <---------ANAC58        <---------HSFB2a(2)      ------>ZmHOX2a(1)   <------- ------>LBD16     <---------MYB46(3)        <---------ARR14(2)--------->TOE2(1)          <-------GAMYB ----->ANAC46     ------>ZmHOX2a(2)         --------->ARR14(2)--------->TOE1(1)          <---------At4g35610 ->P--------->ANAC58    <---------ANAC46   <------ZmHOX2a(1) <---------------AtSPL3     --------->MYB52(2) -GT1<------ZmHOX2a(1)  <---------ANAC58 <---------TOE2(3)   --------------->AtSPL8  <-----------HVH21   cgaagcaggacaccatttgatcgttgccttgtggcactccatgaaggattcgagaatataattctcgtacatctccttcactggctctgtgagttgctcg  2847000                      <---------ALFIN1                                                              -  <---------ARR14(2) <------NtERF2                                                                  -  --------->ARR14(2)----------->RAV1(1)                                                         ----- ---->ZmHOX2a(2)    ------>NtERF2                         <---------At4g35610                 <------ --ANAC58     ------->GAMYB                               --------->At4g35610            --------->ARR11(3) =====HOX2a_HOX2a  ----------->HVH21        --------->CCA1(2)                            <---------ARR11(3) --ANAC58  ----------->RAV1(1)      <---------TOE2(3)------>ZmHOX2a(1)<<<<<<<<<TBF1    ----------->ARR10   atcgtatcgggtccaacagaggcgacacagtcttggctaaggcaagagatgagtcctctctgctccttgttcttcttcagagcatcgctgagatattcac  2847100                                                                          --------->ZAT2                                                                          <---------ZAT2                                  <---------ANAC58                        <---------At4g35610                                  <---------ANAC58                        --------->At4g35610                                  <---------ANAC46                     <------ZmHOX2a(2)                              --------->DAG2                          <-----------HVH21       <---------MYB46(3)   ---------->DOF2                        <---------TOE1(2) -------->ANAC58         --------->At4g35610                  <-----------HVH21 -------->ANAC58    <---------ANAC58 --------->REM1(2)       --------->ANAC46 ---->ANAC46        <---------ANAC58--------->ALFIN1     <---------ALFIN1 ----------->RAV1(2) -----GT1           <---------ANAC46<------NtERF2      <-----------HVH21<-----------RAV1(2)   tccagcaagttgttgaaaacttgtgtgagcaaaagggcgtggagactaagtaatctccatcacccgtctcacgatcagctgaagaagagttggaattgag  2847200                                                            --------->TOE2(3)                                                            --------->TOE1(3)                                                      ----------->HVH21                                                     ------>ZmHOX2a(2)                                                    <------ZmHOX2a(2)                                                    --------->CCA1(2)                                                   --------->ARR11(3)          --------->TOE1(3)                        <---------ARR14(2)                            <---          --------->TOE2(3)                        <---------ARR14(3)                           <----          ------->GAMYB                            --------->ARR14(3)                        --------        -------->P        <---------HSFB2a(1)      --------->GLK1(2)                         --------        ------>MYB83      --------->HSFB2a(1)      <---------AGP1                           ---------        ------>MYB46(1)   <---------HSFC1(2)       --------->ARR14(2)                       ---------      --------->DEAR3(1)  --------->HSFC1(2)       <---------ARR11(3)                     <------ZmHOX2a(1)     --------->DEAR3(2) <---------GLK1(2)        ----------->ARR10                      <---------TOE2(3)   aactcgagccaaccctaacttcgccagaaacttctccttgttgtcaccaagaagatctgaagccttaaacgagttccatccgagacgaattaggatgacg  2847300                                            <---------ARR11(3)                                   ------>ZmHOX2a(2)                                  <------ZmHOX2a(2)                                 <---------ARR11(3) <---------ANAC58                <---------ARR14(2) <---------ANAC58                --------->AGP1 ----GAMYB                       --------->ARR14(2) -----MYB46(3)                   <---------AGP1                --------->ANAC58 ---->AtMYB77                    --------->ARR11(3)            --------->ANAC58 ->MYB52(1)                     --------->GLK1(1)              --------->ANAC55(2) -->TGA1                        <---------GLK1(1) --------->YAB1                 --------->ANAC58 -->HVH21                     --------->LBD16  <----------DOF2<---------LBD16    --------->ANAC58  --   gttgcatccgattttgacaccaagaagacttccgagatctgttcaatttctttcatcatcttctcacggacttgtgttttcgcaagcacagagtatttct  2847400                                                         ---------->DOF2                                                      <---------TOE1(3)                 --------->ZAT14                      <---------TOE2(3)                 --------->At4g35610                 <---------DOF5.7(2)                 <---------At4g35610                 --------->MYB52(1)              --------->RAP2.6(3)              ---------->DOF2     --------->At4g35610       --------->GLK1(2)   --------->DOF5.7(2)   ----------->GT1 --------->MYB52(1)       ---------->DOF2   --------->TOE1(3)     ---------->DOF2             <------ ------->MYB46(3)<---------ZAT14<-------TEIL--------->TOE2(3)   --------->ARR11(3) ----------->GT1   gaccatcggcttccatgactgcagaacataaagattcagttttaaacctaaaagttaacgaaagaagataaagaatggataaattttgttaatcgatgga  2847500                          <------------CBF                        --------->LBD16                       <---------ANAC46                    --------->TOE2(2)                   <---------ANAC58                   ----------->RAV1(2)                  <---------ANAC58               <---------ANAC58                        --------->At4g35610               <---------ANAC58                        <---------At4g35610       ---------->ID1 <---------LBD16                <--------P   <-----------TBP-------->P                        <---------MYB52(1)                  ---------->DOF2 <---------ARR14(2)<---------ANAC58               <---------TOE2(3) ----------->GT1   --------->ANAC58 --------->ARR14(2)<---------ANAC58        --------->MYB59         <---------TOE2(3)  --------->ANAC58 ---SPL7     <-----------GT1               <---------TOE2(3)    <------ZmHOX2a(2)     --------->ANAC46   cgggattttgtagttttacttacctgcggattgaacgggaagagtaaggtttacggtagcttagggatcaaggtaacaaaatcaacacaagaaagaaaac  2847600                                        <-----------TBP                                ----------->RAV1(1)                --------------->AGL15                              <------NtERF2                        --------->TOE2(3)                              --------->At4g35610                  <---------------AGL15                             --------->ANAC58                   <-----------GT1                             --------->ANAC46                <---------ICU4      --------->ANAC58                             --------->ANAC58         ----------->GT1        --------->GLK1(2)          <-------TEIL   --------->ANAC58           <------------CBF    ---------->DOF2       <------     --------->ICU4      --------->ANAC58 <---------AHL20(2)<---------AHL20(1)   <---------TOE2(3) --     <---------YAB1      --------->ANAC46 --------->AHL20(2)--------->AHL20(1)   --------->ANAC58 <--   tctggtgatgagtacatgagagactacaagccagcaacaagtatttatatacaaaattgaaaaatattacctcataaagaatcaaggaaaatatacagct  2847700                                             --------->AHL20(2)                      <---------AHL20(2)     <---------AHL20(2)            <---------GLK1(2)    <---------AHL20(2)                                                 <            <---------ARR11(3)  --------->AHL20(2)                                             <-----            <---------ARR14(2)  <---------AHL20(2)       --------->MYB46(3)                    <-----  --------->YAB1     --------->AHL20(1)     <---------AHL20(2)                            --------->ICU4 ---At4g35610        <---------AHL20(1)     --------->AHL20(2)                         <---------ARR11(3) ------->YAB1        <---------ARR11(3) <---------YAB1<---------ZAT18                  --------->ARR11(3) -------YAB1--------->ARR14(2)--------->TOE2(3)       --------->ZAT18               --------->YAB1<--   attatagtaatctagatactctatatatttttcattaattttctgattaaatttagtgaacaaacatgttttttagcaatttgaaataagaacttattaa  2847800                                                           --------->O2                                                           <---------ANAC58                                                           <---------O2                                                           <---------ANAC46                                                           <---------ANAC58          <---------AHL20(2)                                                           <---------TGA1a--------->AHL20(1)                                                           --------->TGA1a--------->AHL20(2)                       <---------ARR14(2)                  <---------ANAC55(2)  <---------YAB1                  ----------->GT1                          --------->ANAC55(2)----------->GT1                 <---------TOE2(3)                 ------>ZmHOX2a(1)      <---------AHL20(2) ---------YAB1   --------->DAG2                 ---------->ID1       --------->ICU4<---------YAB1 ----AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------ANAC46--------->AHL20(2) ------GT1---------->DOF2                      <-----------GT1      --------->AHL20(2)   <---------YAB1 --------DOF2  --------->CCA1(2)  --------->WRKY18(1) ----------->HVH21  <---------AHL20(2)   -------   cttttattgaataaaagataaggtgaatccaattcagtcaaactatatttttcctattgacgcgtgtcataaaaattaaattgttattaatatgaataga  2847900  Previous    Next  AGI:  At5g08730.1    Description:  IBR domain-containing protein. similar to IBR domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G63730.1); similar to OJ990528_30.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE02043.2); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) Range:  from: 2845825    to: 2847416    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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