Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->KAN4(2)                                                                                          --------->HSFB2a(1)                                                                                          <---------HSFC1(2)     ---------->DOF2                                 <---------ANAC46                     --------->HSFC1(2) -------->ARR14(2)                                   <---------ANAC58                     <---------HSFB2a(1) -------->GLK1(2) <------MYB83  <---------------AtSPL8                                    <---------KAN4(1) ---------ARR14(2)<------MYB46(1)   ------->TEIL     <---------ANAC58                     --------->KAN4(1) --------GLK1(2)--------->ALFIN1--------------->AtSPL8                           <---------ICU4 ->YAB1      --------->DAG2     --------------->AtSPL3                        <---------ICU4 -YAB1      ---------->DOF2     <---------------AtSPL3                     --------->YAB1<---------KAN4(2)   agaatctgaaagaaaaaagtgggtattactgagggaagtacctccaaacgagattgggtatgaaatcagcaagtcgttcataatcagtaagaacattcca  2845000                                                                                     <-----------GT1                         --------->ARR14(2)                                      <----------DOF2                         <---------GLK1(2)                         ------->TEIL  <---------DAG2               --------->GLK1(2)                           <------ZmHOX2a(2)   ------->TEIL               <-----------ARR10         =========================HOX2a_HOX2a------->GAMYB              <---------GLK1(2)          ------>ZmHOX2a(1)<---------ARR11(3)--------->ANAC58           --------->YAB1<---------ARR14(2)           --------->ANAC46      --------->ANAC58         --------->GLK1(2)--------->GLK1(1)  <---------MYB52(1)    -------->P<---------ZAT18 ------>ZmHOX2a(1)   aacagattgagaatcagaatcgacccagatttcgcctcttatcctccgttctctccacgagatcacatcaacctcacaacgcacttttctctctcctctc  2845100                                                         <---------MYB52(1)                                                        ------>NtERF2                                                       --------->RAP2.3(2)                          -                                                       --------->RRTF1(3)                        <---                                                       --------->DEAR3(1)                       <----                                                       --------->RRTF1(2)                     -------                                                       --------->RAP2.3(3)                   <------NtERF2                                                      <------NtERF2                         ------>NtERF2                                                      --------->ATERF1(1)                   ---------                                                      --------->RRTF1(1)                    ---------                                                      --------->DEAR4(2)                    <--------                                                      --------->ORA47(2)                   <---------ATERF1(2)                                                      --------->RAP2.3(1)                  --------->ATERF1(2)                                                      --------->ERF1                       --------->RAP2.6(2)                                                     <---------ATERF1(1)                   --------->RRTF1(2)                                                     --------->ABI4(2)                     --------->RRTF1(3)                                                     ------>NtERF2                         --------->RAP2.3(3)                                                     <---------RAP2.6(1)                   <---------DEAR3(1)                                                     <---------ORA47(2)                    --------->RAP2.3(2)                                                     <---------RRTF1(1)                    --------->DEAR3(1)                                                     <---------RAP2.3(1)                  --------->RAP2.3(1)                                                     <---------ERF1                       --------->RRTF1(1)                                                     <---------DEAR4(2)                   --------->ORA47(2)                                                    <---------RAP2.3(2)                   --------->ERF1                                                    <---------DEAR3(1)                    <------NtERF2                                                   --------->RRTF1(1)                     --------->DEAR4(2)                                                   --------->RAP2.6(1)                    --------->ATERF1(1)                                                   --------->ATERF1(1)                    --------->RAP2.6(1)                                                   --------->ERF1                        ------>NtERF2                                                  <---------ATERF1(1)                    --------->ABI4(1)                                                 <---------ATERF1(2)                     <---------ATERF1(1)                                                 --------->DEAR3(1)                      --------->LBD16                                                 --------->ATERF1(2)                    <---------ALFIN1                                                 <---------DEAR3(1)                     --------->ANAC46                                               --------->MYB52(1)                      <---------LBD16                                              --------->AtMYB61                     --------->ATERF1(1)                                     <-----------GT1--------->DEAR3(1)             ------>NtERF2-----         ------>MYB46(1)         <---------MYB52(1)--------->RAP2.3(1)             <---------ATERF1(1)         ------>MYB83       -------->P        <---------ALFIN1                    ----------->HVH21<-       --------->TOE2(3) ------>ZmHOX2a(1)   <---------MYB55(2)         --------->ANAC46--------->DEAR3(1)       <---------MYB59  --------->ANAC46     --------->MYB46(3)       <---------AtLEC2<---------ATERF1(1)   tcgtcgaaacctaatccactatctctcctcaacccgttatcacctctaccaccggcgccgctatgtctcgttccatggcacttggcgaccccgccgccga  2845200      --------->ALFIN1   <---------AtMYB61   --------->ALFIN1   <---------DEAR3(1) --------->LBD16 -------->LBD16 ---ZmHOX2a(2) -----ARR14(2) -->DEAR3(1) >LBD16                      --------->ARR14(2)                                <------ZmHOX2a(1)----- >ABI4(1)                    <---------ARR14(2)               <<<<<<<<<<<<<<<<<LFY              ----- -ATERF1(1)                  --------->GLK1(2)       ------->GAMYB           <---------TOE2(3)  ----- ---->ARR14(2)       --------->ARR14(2)             <---------ALFIN1    --------->ATHB12  <---------ZAT6 --------LBD16       <---------ARR14(2)           ----------->RAV1(1)  <-------TEIL       <---------ANAC46   tcccggaggtggaaatggacgagaatactcgaatccgagagggagatgggagcaacacacttaaaaacactggttcattgaggaaattgatagtgtgaac  2845300                                                                              --------->ARR14(1)                                                                             --------->ARR14(2)                                                                             --------->ARR11(3)                                                                             <---------ARR14(2)                                                                             <---------ARR11(3)                           ----------->HVH21                    <---------ZAT14                       --------->ZAT18            --------->ANAC46    <------ZmHOX2a(1)    ---------- ---->ANAC58     --------->HSFC1(2)        --------->ALFIN1     --------->REM1(2) *TSS     <---------ZAT6 ---->ANAC58     <---------HSFC1(2)     --------->DAG2          --------->ZAT14  <-----------RAV1(1)< ---->ANAC46 ----------->GT1          ---------->DOF2     <-----------HVH21----------->ARR10  <------   gccatgagagagatgtggaaacttgctcactgacattagcgaaaggtgttcgacgaaatgtgtcagtgtagaggaagaagatactgttgcagagtgttac  2845400                          <---------RVE1(1)                         <---------ARR14(2)                         --------->ARR14(2)                         <---------GLK1(2)                     <------NtERF2                     <---------LBD16                    ------>NtERF2                    --------->MYB52(1)                   --------->DEAR3(1)                  <---------MYB55(2)                  --------->MYB46(3)    <---------MYB52(1) --------->LBD16                 ----------->GT1   <-------GAMYB <---------At4g35610       <---------AHL20(2)                             <---------AHL20(2)  ----------->GT1--------->At4g35610      --------->AHL20(1)                  ------------>CBF ->GT1          --------->ANAC46          <---------AHL20(1)         <----------DOF2      <---------AHL20(1) ---------At5g28300<---------ALFIN1   <---------AHL20(2)         <-----------GT1          --------->AHL20(1) -----GT1 <---------GLK1(2)   <-----------GT1    <---------TOE2(3)  <---------DAG2       --------->AHL20(2)   attaccgttaaatattctcagccaccggattttttcttattttatatatttgatgtatggttgaaattcaccttttgttcttcaatagacattatattcg  2845500                                                                                                 ----                                                                        --------->ANAC58        <----                                                                        --------->ANAC58        <----                                                                   <---------YAB1               -----             <----------DOF2                                     --------->YAB1                 <----          <-----------GT1                                       <---------YAB1                 ------        <---------AHL20(2)                                     --------->AHL20(2)              ------    --------->ATHB12    --------->At4g35610                    --------->AHL20(1)             -------   --------->ICU4       <---------At4g35610                  <---------AHL20(1)              --------   <---------YAB1       ------>ZmHOX2a(1)                    --------->AHL20(1)     --------->YAB1---   aaaccatgatttaaactttattgttcctctgaagttttgtatttgcattttcatgttacaaaaaatattataacaaggaaacacaaacataaacaccaac  2845600 --->GAMYB -----MYB55(2) -----MYB52(2) ---->MYB46(3) -----MYB111(2)                                                                                ------ >MYB83                                                                                      ------>ZmHOX2a(2) >MYB46(1)                                                                               <---------YAB1 ---->RAV1(1)                                   <----------ID1                         --------->YAB1 ->AtMYB61                           ---------->DOF2      ----------->RAV1(1)     <---------WOX13(1) ------>ANAC46                    ----------->RAV1(1)    <----------ID1        <---------YAB1========   aaacaacaacaacaacaacaacaacaacaacaacaacaacaaagacttagaagacaaatgcaacaagactcttaaaccaatatgatggatgatgatccaa  2845700                                                                     --------->ANAC58                                                                     --------->ANAC58                                                                     --------->ANAC46                                                                   ------>MYB83                                                                   ------>MYB46(1)                                                                   --------->MYB52(1)                                                                  --------->MYB55(1)                                                                 --------->MYB46(3)                                                                 <---------MYB46(2)                                                                 --------->AtMYB61                                                                 <---------MYB52(2)                                                                 <---------MYB55(2)                                                                --------->ANAC46                                                                --------->ANAC58                                                                --------->ANAC58         ---------->DOF2                               --------->At4g35610      <------ZmHOX2a(1)                                ----------->GT1 ----->RAV1(1)     ---------->DOF2         ----------->RAV1(1)<----------ID1        <---------ATHB12 ============HOX2a_HOX2a             --------->ANAC46 --------->GLK1(2)           --------->WOX13(1)   cacagagaggagaaagagaaacaaaggagactcttaaacacaaaacaacacaagagaagctaaaacaccaaacgaaaccagcatcaatcactgatgagac  2845800                                                           --------->O2                                                           <---------TGA1a                                                        ----------------->AGL1                                                       ------>NtERF2                                                    <---------At4g35610                                                    --------->At4g35610                                                    --------->ZAT2                                                    <---------ZAT2                                                 <---------At4g35610                                                 --------->At4g35610                                                 --------->ZAT2                                                 <---------ZAT2                                                --------->ARR14(2)                                                <---------ARR14(2)                                            <-----------RAV1(2)          <---------YAB1         --------->YAB1                <---------ARR11(3)  <---------O2<------ZmHOX2a(1)   --------->DAG2         <---------ICU4                --------->ARR14(3)  --------->TGA1a       <-----------RAV1(2)   ------>ZmHOX2a(1)                   <---------ARR14(3)  ==========================================bZIP_DOF   <----------DOF2                     --------->ARR11(3)<---------------AGL15   <---------LBD16 ----  --------->TOE2(3)          <---------GLK1(2) <------ZmHOX2a(1) <------ZmHOX2a(1)        ---------->DOF2   ttatcctttactcatcactcactctcactccgattttccaaggtcttcaggagctgctgccacttgaggagaaggatgatagtccagggggaaaaagcac  2845900  Previous    Next  AGI:  At5g08720.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01650.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01650.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO41142.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71647.1); similar to hypothetical protein OsI_013732 [Oryza sativa (indica cultivar-group)] (GB:EAY92499.1); contains InterPro domain Streptomyces cyclase/dehydrase (InterPro:IPR005031) Range:  from: 2841419    to: 2845382    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g08730.1    Description:  IBR domain-containing protein. similar to IBR domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G63730.1); similar to OJ990528_30.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE02043.2); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) Range:  from: 2845825    to: 2847416    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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