Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->ANAC58                             --------->GLK1(2)          --------->ANAC46                        --------->ETT(2)          <---------MYB52(2)                      --------->bZIP60(1)          --------->ANAC58                        <---------ETT(2)                                  -         --------->LBD16                          <---------bZIP60(1)             --------->ANAC58  - ----------DOF2                                   <---------TGA2(1)               --------->ANAC58<-- ------->HSFB2a(1)                             ----------->HVH21                <xxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------HSFB2a(1)             ------>MYB83    ------>ZmHOX2a(1)                ---------->DOF2   <-- ---ZmHOX2a(1)                 ------>MYB46(1) ----------->TGA1            <---------ALFIN1       <--   gactttccttccacgaacgagaccctcagtaccatccatagcaatggtcctgacgacattctgacccaagtgatgagacacctcaagcactagccttgtg  2820800                                      <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                    <---------GLK1(1)         ------->TEIL             <------NtERF2       <---------CCA1(2)        <---------ALFIN1      <------MYB46(1)      ------>ZmHOX2a(1)      ------>ZmHOX2a(1)       <------MYB83        --------->TOE2(3)                          --------    ------>ZmHOX2a(2)        <---------AtMYB61   ------>ZmHOX2a(2)                           --------  --------->ARR11(3)         <---------MYB46(3)--------->ARR14(2)                 ----------->RAV1(2) ---------->ARR10           <---------WOX13(1) <---------ARR14(2)                 <---------bZIP60(2) ---------->HVH21         <---------ICU4     ------>ZmHOX2a(1)                 <---------ATHB12 -------ANAC58            --------->ATHB12 ----------->RAV1(2)                 ----------->HVH21    < -------ANAC46           <---------YAB1  ===============HOX2a_HOX2a        <------NtERF2     -------- -------ANAC58           --------->ICU4  ------>ZmHOX2a(1)                ------>NtERF2    <---------ALFIN1   gggtgatcctgcacctcgagagatgtcatgattggtggcaatccttcctgatcctcaaatctcacatcgacaatggcaccaatgacctggcaaacacgcc  2820900                                                                              <-----------RAV1(2)                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                         --------->At4g35610                                                                         <---------ZAT2                                                                         <---------At4g35610                                                                    --------->At4g35610                                                                    ----------->RAV1(2)       <------                                                                    <---------At4g35610      <-------       <----------DOF2    --------->ARR11(3)                        <---------ZAT2           <-------      <---------DAG2 --------->YAB1                               <-----------RAV1(2)        <-------    <---------TOE1(2)--------->ATHB12                             --------->ATERF1(1)        <-------    ------->TEIL    <---------YAB1                                <------NtERF2              -------- ------>ZmHOX2a(2)  --------->ICU4                 <------ZmHOX2a(1)--------->ZAT2          <------NtERF2 ->ANAC58       --------->At5g28300        --------->TOE1(3)    <---------ANAC58  ----------->HVH21 ->ANAC58     <------NtERF2                --------->TOE2(3)    <---------ANAC46<---------At4g35610 ------ZmHOX2a(2)   <---------ATHB12 <---------ALFIN1--------->At4g35610 --------->ZAT2  <-----------HVH21 ->ANAC46    ------>NtERF2<---------ARR11(3)------>ZmHOX2a(1)   <---------ANAC58--------->At4g35610<-   cgatcgcacctttgccaccgtaatcataggtcttcttcccctcatccttagcaggagcagaagatggcgcagctgagcttgcaggtgaagaggtcgcgta  2821000                                                                                                    <                                                                                                   --                                                                                                 ----                                                                                                <----                                                                                               <-----                                                                                               ------        --------->DEAR3(1)                                                                     <-----       <---------RAP2.6(2)                                                                     ------       --------->ATERF1(1)                                                                     <-----      <---------ATERF1(1)                                                                      ------      ------>NtERF2                                                                           -------     --------->O2                                                                             <------     <---------O2                                                                          <---------At4g35610     <---------bZIP60(2)                                                        <---------MYB59<-----     =======================MYC_MYB                                             --------------->AGL15     <---------TGA1a                         <---------MYB46(3)                 <---------------AGL15     --------->DEAR3(1)                --------->PCF2                          ----------------->AG--    <------NtERF2                    <---------SPL7                            <-----------------AGL2    --------->ATERF1(1)              <------NtERF2                             ----------------->AGL1   ------>NtERF2                     ----------->HVH21                         <-----------------AGL1   <---------ATERF1(1)             <---------ANAC46                            <-----------------AGL3  <---------DEAR3(1)              <------NtERF2 --------->ALFIN1               ----------------->AGL3  ----------->HVH21               <---------LBD16                          <-------GAMYB <---------RAP2.3(3)  --------->DEAR3(1)             <---------RAP2.3(1)                     <---------YAB1  <---------ATERF1(2) <---------------------WRI1      <---------DEAR4(2)                      <---------TOE1(3)<---------RAP2.3(1) <------NtERF2                  --------->ATERF1(1)                      <---------TOE2(3)------>NtERF2 ---ZAT18            --------->At4g35610   --------->LBD16               <---------ANAC46<---------DEAR3(1) --ANAC55(2)         <---------At4g35610   <---------LBD16             ------------>AtMYB77<------NtERF2 --ANAC46      <------ZmHOX2a(1)--------->ALFIN1----------->HVH21     <---------ARR14(2) --------->ATERF1(2) --ANAC58------>NtERF2          <---------DEAR3(1)                    --------->ARR14(2) <---------RAP2.3(2) --ANAC58<------NtERF2  <-------TEIL------>NtERF2                    <-------GAMYB       <---------RAP2.6(2) ->ANAC55(2)<------NtERF2      --------->At4g35610             ----------->RAV1(2)      <---------LBD16 --------DEAR3(1)  <--------P  <---------At4g35610   <------ZmHOX2a(1)<---------SPL7    --------->RAP2.6(3)   ctcggcgacgcggccgaggaggtagctacatggagcggcgggacgcgcgggtgaaggagaaggaagcctggggttacggttgcctaatttggcggcagat  2821100      --------->At4g35610                             --------->ALFIN1  --------->LBD16                                   <---------ANAC58 --------->HSFB2a(2)                                <------MYB46(1) <---------HSFB2a(2)                               --------->MYB55(2) ---------LBD16                                    <---------MYB46(3) ------>P                                      --------->ATHB12 -->ZmHOX2a(2)                                <---------YAB1 --ZmHOX2a(2)                                 --------->ICU4 ------ARR10                              ------>NtERF2 --->ARR14(2)                            --------->ANAC46 ----ARR14(2)                            --------->ANAC58 --->ARR11(3)                            --------->ANAC58 ----ARR11(3)                        --------->HSFB2a(2) --->AGP1                            <---------HSFB2a(2)<---------ANAC46 -->At4g35610 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ALFIN1            ----------->GT1 ---CCA1(2)------->TEIL<---------YAB1--------->LBD16<---------ANAC58         *TSS ----AGP1 --------->MYB52(1)        --------->ANAC46<------MYB83             --------->DAG2 ------->MYB52(1)    --------->CCA1(2) <---------ATERF1(1)                  ---------->DOF2         -   ctaccggaagatgaacggagaagagatgataagactctccgagacgccatgagtgggtgtgtgtttgagagagagagagaaagtgaaatgctagggtatc  2821200                         --------->ANAC46                         --------->ANAC58                   --------->SPL7                  ---------->DOF2                <-----------RAV1(1)                             ----                 <---------RAP2.6(3)             <---------AtMYB61                   <----------DOF2            <---------WOX13(1)        <---------ALFIN1                              --------->YAB1           <------------CBF       <---------At4g35610                             <---------ARR14(2)          --------->ATHB12  <-----------ARR10<----------DOF2                      --------->ARR14(2)         <---------YAB1  --------->ANAC58    <---------DAG2   <---------AHL20(2) <---------CCA1(2) ---------->RAV1(1)---------->DOF2--------->At4g35610<---------ZAT18    --------->MYB52(2)       <---   aacaacatatgctgattgccgaaaggcccgaaactaagctccactctctttttggtgggcttagttaatgggcttagttgggcctatctttatccatttt  2821300                                                               <---------AHL20(2)                                                               <---------YAB1                                                               --------->AHL20(2)                                                          ------>ZmHOX2a(2)           <---------ANAC58                                                          <-------TEIL                <---------ANAC58                 ------->TEIL                            <------ZmHOX2a(2)     --------->ICU4        --------->AHL20(2)        <---------ATHB12      <---------ARR14(2)     <---------YAB1    ----------->GT1     <------ZmHOX2a(1)         <---------STY1(1)      <---------TOE2(3) ----------->AGL15  ---------->DOF2       --------->At4g35610 --------->AHL20(2)--------->ATHB51 ------------AGL15 --------->AtMYB61---------->DOF2     --------->ARR14(2)----------->GT1 ---------->ID1   taaaaatagaaaaaatatgcaccaaaggactgactaatcaaagaagatgacccttggggatccatataattaacaaaggttattattgtcttggcctctt  2821400                                                                                          <---------MYB52(1)                     --------->ZAT6                                                      --------->At5g28300                   <-----------GT1  <---------AHL20(2)                              --------->ZAT18    <---------WRKY12<---------At5g28300                                            >>>>>>>>>>>>>>>>>LFY    <---------WRKY38(1)         <---------ANAC55(2) --------->DAG2             ---------->DOF2 <------MYB83      <<<<<<<<<<<<<<<<<LFY            ---------->DOF2      <---------DAG2  <---------ZAT6 <------MYB46(1)   --------->MYB52(1) <---------AHL20(2)                <----------DOF2 ----------->GT1   gggaggtcaaagttttcgaattaacagtggtattacatatatttttggtgataaaaagtcatatcagtagcaaactttttgaaaagaccactgttaattc  2821500                  <---------DAG2                  <----------DOF2                    ---------->DOF2                            <----               <-----------GT1            <---------MYB52(1)                                ---------        --------->ANAC58                <---------ANAC58                            <-----------GT1        --------->ANAC58                <---------ANAC58       <-----------RAV1(1)<---------WOX13(1)   gacattacacaaacaattcactttacaaatctatctgaattttcgtttgtataacaaaagttcaaatgttgggaacatcgtttgattaacaaaatagtta  2821600                                                                              --------->ZAT14      --------->ANAC58                                                  >>>>>>>>>>>>>>>>>LFY      --------->ANAC58                                                <---------At4g35610      <---------ANAC55(2)                                             --------->At4g35610    <---------ALFIN1                                             --------->ANAC58  <---------At5g28300                                            --------->ANAC58     <---------YAB1 ---TEIL                                                    <---------ETT(2)  <---------ZAT18 -->GT1                                                     --------->ETT(2)  <---------ZAT14    <---   cattcaccacgtatggtttacatatgatgaagatgagaaaatggtctagtttttgttatttgtcgacaagtaagctccagtgtacattttgtttgttttt  2821700  Previous    Next  AGI:  At5g08670.1    Description:  ATP synthase beta chain 1, mitochondrial. Identical to ATP synthase subunit beta-1, mitochondrial precursor [Arabidopsis Thaliana] (GB:P83483;GB:Q8VX26;GB:Q9C5A8;GB:Q9C5B0); similar to ATP synthase beta chain 2, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G08690.1); similar to ATP synthase beta chain, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT5G08680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42228.1); similar to ATP synthase subunit beta, mitochondrial precursor (GB:P17614); similar to hypothetical protein [Vitis vinifera] (GB:CAN69512.1); contains InterPro domain ATPase, F1 complex, beta subunit; (InterPr Range:  from: 2818118    to: 2821177    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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