Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         ------>ZmHOX2a(1)                                                                       ==============HOX2a_HOX2a                                                                   <-----------GT1                                                               <----------DOF2      <---------AtMYB61                                                            <-----------GT1       <----------DOF2                                                         <---------ARR11(3)   ------>ZmHOX2a(2)                                                         --------->ARR14(2)  <---------At4g35610                                      --------->LBD16    <---------ARR14(2)  --------->At4g35610                                      ------>ZmHOX2a(1)  --------->ARR11(3) <---------ARR11(3)      < ------>LBD16                   --------->HSFB2a(1)      <---------GLK1(2)  --------->ARR11(3)  <---- ->GLK1(1)                      <---------HSFB2a(1)    ----------->ARR10   <---------ZAT14      -----   cccaaaaatgttcttggcaagatgggtctcaaaaacgttcctggtcttagaaccaagtagattttcttttttcctagtgatctgctttggttttaaaact  2794100                     --------->REM1(2)                     --------->ZAT14                    --------->ALFIN1                  <---------ANAC58                  <---------O2                                                       <---------ANAC58                  --------->O2              <---------ALFIN1                         <---------ANAC58                  <---------ANAC58         --------->ZAT14                    ---------->DOF2     <-- ---------TOE2(3) <---------ANAC46  <---------ICU4                   --------->RVE1(1)    <---------YAB1 ------DOF2  --------->REM1(2)     --------->ICU4           ------>ZmHOX2a(1)--------->YAB1       --- ---->TOE2(3)--------->ZAT14       <---------YAB1          <---------MYB59------>ZmHOX2a(1)   -------   ttaatgttttgtaagtgtagacgtgtagtctcttgtcattcttgctacactcttaagacttcctaactaaaaaatcctataaaagttgccttcttataaa  2794200                                                                                          <---------ARR11(3)                                                                                          --------->ARR11(3)                                                                               <---------ANAC58                                                                               <---------ANAC55(2) <----------DOF2                                            ----------->GT1    <---------ANAC58 -------ARR11(3)<---------ANAC46                           --------->DAG2      <---------ANAC55(1) ------>ARR11(3)<---------ANAC58                  <----------ID1               --------->ANAC55(2) --->DOF2       <---------ANAC58          --------->ZAT6  ---------->DOF2    <-----------GT1  <------   ggtcttttgtttgtaatggcttgttaacatgagtatttcgattttcactaaaaaaacaaaaaaagtattaagttggattatacgtgtttgaagatttaac  2794300                                    --------->MYB52(1)                                   ---------->DOF2                                --------->ANAC58                                            ---------                                --------->ANAC58           <---------ANAC46                <---------At4g35610                              ---------->DOF2           <---------MYB52(1)                 --------->At4g35610                         <-------MYC3                  <---------RAP2.6(3)             --------->ANAC58                         ------->MYC3                 <---------ANAC58             <---------ALFIN1  <----------DOF2       --------->ANAC55(1)           <---------ANAC46            <---------ZAT18  --  <---------DAG2        <---------ANAC55(2)           <---------ANAC58  <-----------------AGL1  ----- -----GT1             <---------ALFIN1             --------->ANAC46<---------MYB46(3)  --------->ANAC58   aaaacttttttctgatataaaacaacacgtttcaaagcaaagggagcaactacatgccgttttgtatatttgttgacattttgggccactcgcatctgta  2794400                                                                    <---------MYB46(3)                                                             <---------ARR14(2)                                                          *TSS   <------MYB83                                                         --------->LBD16                                                       <------NtERF2--------->MYB52(2)                                                       <---------LBD16                                                      <---------RRTF1(1)                                                      <---------RAP2.3(1)                                                      ------>NtERF2 --------->MYB111(2)                                                     --------->ATERF1(2)                                                     <---------ATERF1(2)                                                     <---------DEAR3(1)                                                     <---------RAP2.3(3)                                                  ------->GAMYB --------->MYB59                                                  ----------->HVH21 --------->MYB46(2)                                                  --------->DEAR3(1)--------->MYB111(1)                                                 --------->DEAR3(2) --------->MYB55(2)                                                 --------->MYB46(3)<--------P                    ----                                               --------->MYB52(1)<------MYB46(1)                 ---- ---------->DOF2                            --------->YAB1<------NtERF2                          ---- ------>AtSPL8                         --------->TOE1(3) ------>NtERF2                        <------ ------->TOE1(3)      ------>ZmHOX2a(1)--------->TOE2(3)<---------ANAC46                ---------->DOF2 -->TEIL   <------------CBF         <-----------GT1--------->MYB52(1)<-------GAMYB  <---------ZAT6   cccttaagccctaaattgtgtttcctacaaaaccttttaaaccctaaaataaccgacggcgggaatttggtagttgcagagccttacagttaaaggcata  2794500                                                                         <---------TGA1a                                                              <---------MYB52(1)                                                             --------->LBD16                                                         <---------ARR14(2)                                                         --------->ARR14(2)                                                     ----------------->AGL2       <---------ANAC58       <---------MYB52(1) <---------ALFIN1           ----------------->AG<---------O2   <---------At5g28300 <-----------GT1               ----------------->AGL1       <---------ANAC58 ----->ANAC46      <----------DOF2                 ------->TEIL        --------->CCA1(2) ----->ANAC58    <---------MYB52(1)      --------->GLK1(1)   ----------->GT1     <-------TEIL ----->ANAC58  <---------ANAC58          <---------GLK1(1) <---------LBD16      --------->GLK1(2) ---SPL7       <---------ANAC58     <---------AtLEC2 ----------------->AGL3    <---------GLK1(2)   cgcttcaccgttctcttccgtcttttctccactcgttggcatgaattccgatggacccaaatccggtaagaagagacgagagattcgtgctaaacttgtg  2794600                                     --------->WRKY18(1)                          --------->HSFB2a(2)                          <---------HSFB2a(2)                         <---------LBD16                       <---------ANAC46                                         --------->ARR14(2)                       <---------ANAC58                                         <---------ARR14(2)              <---------ANAC46 --------->ANAC58    --------->YAB1               <-----------ARR10           ----------->HVH21   --------->ANAC58 --------->YAB1                  --------->GLK1(2)           ----------->TGA1  ---------->DOF2 ----------->RAV1(1)               <---------GLK1(1)    --------->WRKY12   <---------ANAC58   <------ZmHOX2a(1)---------->DOF2 ----------->GT1     ------   aagaagttgacgagtgacgaagatggctcgggaaagctagtcaaggacaacaataagagtctaaagaggggaagagaaggcaaatctgatgttgatgagc  2794700                                                                                           <---------ANAC58                                                                                           <---------ANAC46                         ------>NtERF2                                                     <---------ANAC58                        --------->ANAC46                              ---------->DOF2    <-----------GT1                        --------->ANAC58                     <---------YAB1      <-------TEIL    <---               <---------GLK1(2)                          --------->GLK1(2)  --------->ANAC58   <----              --------->ZAT2                             <---------ARR14(2)  --------------->AtSPL8 <      <---------TOE2(3) --------->ANAC58                 --------->ARR14(2)  <---------------AtSPL8<- ->TEIL       <---------ZAT2                             <---------GLK1(2)   --------->ANAC58   <----   ctcttattaagaaaccagcttctactacgcctctagtgactcaaattgctaaaacttcagattcttatttgtcaaagacaaggtacattttttgcgtttc  2794800                                                      ----------->GT1                                                     <---------YAB1                                                     <---------TOE2(3)                                                     <---------TOE1(3)                                               --------------->AGL15                                               <---------------AGL15                                              <-----------------AGL2                                              <-----------------AGL3 -------DOF2                                  <-----------------AG                     <---------ALFIN1 -----ANAC58                   <---------MYB46(3)<----------DOF2                  --------->At4g35610 ---------ANAC46              <---------ANAC46<-----------------AGL1     <---------GLK1(2)          < --------LBD16         <---------YAB1      --------->GLK1(1)             <---------ARR14(2)      ---- -----ANAC58          --------->TOE2(3)    <---------GLK1(1)             --------->ARR14(2)      ----   tttcggagatagcttcagagctattcttagtggtgtttgattcagatttctctttatggtaaaatggttcttacagatttgatcagttcccactgtctcc  2794900       ---------->DOF2   --------->TOE2(3)   --------->TOE1(3)                                <------ZmHOX2a(1)  ----------->GT1                                <---------LBD16 <---------TOE1(3)                               <-----------RAV1(2) <---------TOE2(3)                           <---------MYB46(3) ---------DOF5.7(2) <---------ARR14(2)     <-------GAMYB ----->TOE2(3)     <------ZmHOX2a(1)      <-----------RAV1(1)                                  ------ ----->TOE1(3)   <---------TOE2(3)        ===================RAV  ------>ZmHOX2a(1)          --------   cttaacgttaaaaggaattgaggatgctggatttaagacaatgactgttgttcaggaggctactcttcctctcattctccaaggtgaacttgcctaaaag  2795000  Previous    Next  AGI:  At5g08610.1    Description:  DEAD box RNA helicase (RH26). Identical to DEAD-box ATP-dependent RNA helicase 26 (RH26) [Arabidopsis Thaliana] (GB:Q9FNM7;GB:Q9ZRZ9); similar to STRS2 (STRESS RESPONSE SUPPRESSOR 2), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT5G08620.1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT5G63630.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67649.1); similar to DEAD-box ATP-dependent RNA helicase 31 (GB:Q0DBU5); similar to unnamed protein product [Vitis vinifera] (GB:CAO39748.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helica Range:  from: 2790296    to: 2794216    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g08620.1    Description:  STRS2 (STRESS RESPONSE SUPPRESSOR 2); ATP-dependent helicase. Identical to DEAD-box ATP-dependent RNA helicase 25 (RH25) [Arabidopsis Thaliana] (GB:Q94C75;GB:Q9ZS00); similar to DEAD box RNA helicase (RH26) [Arabidopsis thaliana] (TAIR:AT5G08610.1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT5G63630.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67649.1); similar to DEAD-box ATP-dependent RNA helicase 31 (GB:Q0DBU5); similar to unnamed protein product [Vitis vinifera] (GB:CAO39748.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helica Range:  from: 2794458    to: 2797661    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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