Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   <------MYB83 <------MYB46(1) ------->ALFIN1 ----->ALFIN1 ----O2 ----bZIP60(2) ----ANAC58                                         --------->MYB46(3) ----ANAC46                                  <---------ANAC58           <-----------HVH21 ----ANAC58            --------->LBD16       <---------ANAC58       ------>ZmHOX2a(2)   ----------->GT1 ----TGA1a           <---------LBD16        --------->ATHB12   ----------------------->TaNAC69(2) -->TGA1            --------->MYB52(1)     <---------YAB1     <---------MYB46(3)       <---------DEAR3(1) -->HVH21    ---------->DOF2            --------->ICU4       --------->ALFIN1      <<<<<<<<<TBF1   --   agtgggtttgaaattgaaagaagaccggagttttaagcggtgatgttgattgtgaccaccatggtggtgatcgtggtcacccttcttcttcggtgaataa  2782900                            <---------MYB52(1)                        ------>MYB46(1)                        -------->P                        ------>MYB83                       ========================HOX2a_HOX2a                                    -------                  <---------ARR14(2)                         <---------ANAC46                 <------                  --------->ARR14(2)                 <-----------------AG                     -------                 <------ZmHOX2a(1)                   <-----------------AGL1                   <------              <-----------RAV1(2)                 <----------DOF2                       --------->ARR11(3)            ----------->RAV1(1)       <------ZmHOX2a(1) --------->ATHB12                <---------ARR11(3)          --------->ZAT18 --------->TOE2(3) --------->DEAR3(1)       <---------ANAC46   --------->GLK1(2)     <------ZmHOX2a(1) ------>ZmHOX2a(1)<------ZmHOX2a(2)    <---------ANAC58           <-----------ARR10 ------->CCA1(2) ==============================HOX2a_HOX2a   <---------ANAC58      ----------->GT1   gagacgaggaagagcaccaggattcctaccgtaatgtataggatcaccgaagctttactcattgggtatttttgtgtaacagaagtagaaaatctcagct  2783000                                                                     ---------->DOF2                                                                   *TSS                                                               <-----------RAV1(1)                                                              ------>ZmHOX2a(2)              <-------                                                             <------ZmHOX2a(2)               --------                           <---------TOE1(3)                --------->AGP1                  <--------   --------->TOE1(3)       <---------TOE2(3)                <---------ARR14(2)           <---------AHL20(1)   --------->TOE2(3)---------->DOF2                         --------->ARR11(3)           <---------ARR11(3) -->ZAT2        --------->At4g35610                         <---------ARR11(3)           --------->ARR11(3) ---ZAT2   <-----------RAV1(1)                              <---------AGP1          <---------ANAC46 -->At4g35610   <---------At4g35610 --------->ZAT6          --------->ARR14(2)  <---------ANAC58 ---At4g35610  <---------MYB46(3) <-----------GT1         ----------->ARR10     <---------ANAC58   tgaaaccctaattttgttggctgaaagttgaggtttttacacttgggaagtgaagaagattagatctgttggaaagatggagtcttgcgaatatatatct  2783100                   ------>ZmHOX2a(2)                  <------ZmHOX2a(2)                 --------->ARR11(3)                 --------->ARR14(2)                 <---------ARR11(3)                                          --------->ANAC46                 <---------ARR14(2)                                        --------->ANAC46    <---------GLK1(2)                                                     ------->GAMYB    --------->ARR14(3)                                                  --------->ZAT14    <---------ARR14(3)                                                 ----------->RAV1(1)    --------->ARR11(3)                                                --------->ANAC46    <---------ARR11(3)             <XXXXXXXXXXXXXXXXXXXXMIR844*     --------->ANAC46          <------    <---------ARR14(2)<---------MYB52(1)                           --------->RAP2.3(3)        ------- --ARR11(3)      <---------AGP1------>MYB83                        <---------ZAT18   --------------->AtSPL8 ->ARR11(3)      --------->AGP1------>MYB46(1)   ---------->ID1    --------->ZAT18   <---------------AtSPL8 -CCA1(2)  --------->ZAT6    <---------MYB59 <---------ANAC46    --------->PCF2   <---------YAB1   atagaagattttgactctagatctgttacgaccaaattagtcaaatggtttgtagtatttaagagagagcccacaacacacatcaatattgtacatttat  2783200                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                  ---                  -------->HAHB4                                                                  <--                  --------->ATHB12                                                                <--                 --------->ICU4                                     --------->MYB46(3)       --------                 <---------ATHB12                                 --------->MYB52(1)     ---------->DOF2             --------->AHL20(2)                                  --------->MYB46(3)     --------->YAB1      --------->ANAC58                                      ----------->GT1            <---------ATHB12      --------->ANAC58                             --------->HSFC1(1)                --------->WOX13(1)      --------->ANAC46        --------->ARR14(2)   <---------HSFC1(1)              ------------>CBF--   <---------REM1(2)        ------->TEIL           --------->HSFB2a(2)           <----------DOF2  <-- ---AHL20(2) <---------AHL20(2)   <---------At4g35610     <------------CBF --------->ARR14(2)-------- -->AHL20(2)--------->AHL20(2)<---------ARR14(2)   <---------HSFB2a(2) <---------MYB52(1)============   ttctctaaacgcaatttaaatgattaaacgaatttctgctaattttgtcatttcgagaagaattgaaacaaccgttggattcactttcaatcaaagctta  2783300                                 --------->PCF5                                *TSS                              --------->ALFIN1                             ------->MYC3                             ------->MYC4                             <-------MYC4                             <-------MYC3                             ------->PIF5                             <-------PIF5                             ------->MYC2        <---------ARR11(3)   <-------MYC2        --------->ARR11(3)  <---------O2        --------->GLK1(2)   <---------TGA1a ------------CBF            --------->PIF3(3) ------->ATHB12             <---------PIF3(3) -------ATHB1               --------->O2                                                 <---------ANAC46 --------ICU4               --------->ANAC46                                             <---------ANAC58 ------->ATHB51             --------->TGA1a                                              <---------ANAC55(1) ------>ICU4              <---------ALFIN1                                               <---------ANAC58 -------ATHB51          <-----------------PIF3(1)                                       <-------TEIL -------YAB1           --------->ANAC46                                               <-------MYC2 ->TOE1(3)             --------->ANAC58    <---------ALFIN1                           <-------MYC3 ------>HAHB4          --------->ANAC58<---------ZAT18              --------->REM1(1) ------->MYC3 -------AHL20(2)     --------->ZAT6    --------->ZAT14            ------>ZmHOX2a(1)   ------->MYC2 ->TOE2(3)      --------->At4g35610    <---------ZAT14        ------>ZmHOX2a(1)    --------->ANAC46 =====================================bZIP_DOF        --------->DOF5.7(2)   <---------YAB1          <   ataattgaaaaatctagcagattacactccacgtggtccagtccaccatcttcttcgtttactccttcctacatcgatattatacacacatgcgtgtgta  2783400                                              ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)                                -------                                             --------->GLK1(1)                               <-------             <---------ANAC58               <---------GLK1(2)                                --------             <---------ANAC58               <---------ARR11(3)                               --------      <---------TOE1(2)                     <---------ARR14(2)                               <-------   ------>ZmHOX2a(2)                        --------->ARR14(2)                              ---------  <---------GLK1(1)                         --------->AGP1                                  <-------- <---------ARR11(3)                         --------->ARR11(3)                          <---------LBD16 <---------AGP1                            --------->At4g35610                   >>>>>>>>>GATA-1 --------->ARR11(3)      <---------GLK1(1) <---------At4g35610        <-------TEIL     --------->MYB52(1) ---------CCA1(2)<---------YAB1     <----------DOF2                  <--------P----------->GT1<------   ttggatctcacgatttcttatcaatggaactcgcttctctttctcagatccccatccaaatcgttttataggtagattagatagataaactacggatata  2783500                                                                          --------->HSFB2a(1)                                                                          <---------HSFB2a(1)         <-----------------AGL3                                           --------->HSFC1(2)         ----------------->AGL3                                    --------->At4g35610         <-----------------AGL2                                    <---------ZAT2         <-----------------AGL1                               --------->HSFB2a(2)         ----------------->AG                               <------ZmHOX2a(2)         <-----------------AG                              --------->ARR11(3)         ----------------->AGL2                            <---------ARR11(3)   --------->ZAT6      --------->ATHB12             <-----------HVH21 ----------->GT1 -->ARR14(2)          --------->ICU4            <---------ANAC46   --------->ZAT2       --------->ANAC58 ---TaMYB80     <---------TOE2(3)               <---------bZIP60(2)<---------At4g35610  --------->ANAC58 ->CCA1(2)      --------->ANAC46             ----------->HVH21<---------HSFB2a(2)     <---------ANAC58 ->GLK1(1)     <---------LBD16               ----------->TGA1------>ZmHOX2a(2)        <---------ANAC58 --GLK1(1)     <---------At5g28300         <---------ICU4  --------->ARR14(2)      --------->ALFIN1 >ARR14(2)<---------------AGL15            --------->YAB1  --------->GLK1(2)     <-----------RAV1(1) -ARR14(2)--------------->AGL15          --------->ANAC58  <---------AGP1 <---------HSFC1(2) ---ARR14(2)  <-----------GT1            --------->ANAC58  <---------ARR14(2)    --------->ALFIN1   ctcgaactctatccatttacggtattgatttggaaatatggacaagtatgacgttgtcaaggatctgggagctggaaatttcggtgtggctcgccttctc  2783600                      ---------->ID1                  <---------ANAC58                                               <---------------AGL15                  <---------ANAC58                                               --------------->AGL15                <---------ARR11(3)                                  <----------DOF2                --------->ARR11(3)                                  <---------DAG2 <---------YAB1            ---------->DOF2                                      ---------->ID1 <-----------------AGL3          --------->ANAC58                                       <-----------GT1----------------->AGL3          --------->ANAC58                                      <-----------GT1 <-----------------AGL2      <------ZmHOX2a(1)           <-------TEIL             ---------->ID1     <-----------GT1 <------   aggcacaaggacaccaaagagcttgttgccatgaaatacatcgagagaggtcgcaaggtttgtttttttcctttttgttcttactatttttgggttcttt  2783700                                --------->At4g35610                                <---------At4g35610      --------->ATHB51                           <----------DOF2               <---------ICU4                        <-----------GT1                  --------->ATHB12                 <---------TOE2(3)                      --------->ICU4                 <---------TOE1(3)                   <-------TEIL ----DOF2  ----------->GT1 <---------DAG2  ------->TEIL <---------YAB1                  <------ZmHOX2a(1)   ctgttttgaattggggtttaaagtttttacttttagctcagtgtgtatgttcaaattcattatttgaagtctccttgctatacatttgtaggaaaatttg  2783800  Previous    Next  AGI:  At5g08580.1    Description:  calcium-binding EF hand family protein. similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT4G27790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65953.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 2780513    to: 2783067    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g08590.1    Description:  ASK2 (ARABIDOPSIS SERINE/THREONINE KINASE 2); kinase. Identical to Serine/threonine-protein kinase ASK2 (ASK2) [Arabidopsis Thaliana] (GB:P43292;GB:Q9FNM9); similar to SNRK2-5/SNRK2.5/SRK2H (SNF1-RELATED PROTEIN KINASE 2.5), kinase [Arabidopsis thaliana] (TAIR:AT5G63650.1); similar to serine/threonine-protein kinase [Fagus sylvatica] (GB:CAE54075.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Plant protein serine/threonine kinase-like (InterPro:IP Range:  from: 2783332    to: 2786095    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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