Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      --------->LBD16  <---------LBD16 ---------WRKY18(1)                                                              ==================== --------->HVH21                                                                 ---------->DOF2 ------->WRKY12                                                             ----------->GT1 -------WOX13(1)                                                          ---------->DOF2 ---->ATHB12                                                              =========================== --->AHL20(2)                                 --------->YAB1            --------->LBD16 --->ICU4                           --------->AHL20(2)                 --------->LBD16      ========= ----AHL20(2)                 <------ZmHOX2a(1) --------->At4g35610    --------->ANAC46     --------- ---DOF2    <------ZmHOX2a(1)----------->GT1 <---------YAB1           <---------LBD16<---------GLK1(2)   attgaccggaaataggagaaaatgagctagtaggaaaaaaaaatgttatcatcagaagtttgtatatgaaaacccggaaagaaaaaagcttctccaaaga  2775500               <---------ANAC55(1)               --------->ANAC55(2)               <---------ANAC58               <---------ANAC58               <---------ANAC55(2)               <---------ANAC46               <---------bZIP60(2)             <---------TGA2(2)            ----------->HVH21        --------->ANAC58        --------->O2        <---------O2        --------->ANAC58        <---------TGA1a        --------->TGA1a        =================================MYC_MYB                                             <-------        <---------ANAC55(2)                                                                  <-------        --------->ANAC55(2)                                                                  <-------      <---------ALFIN1                                                                       <-------    <------NtERF2                   <---------MYB46(3)                                  <---------ARR14(2)    ------>NtERF2                   <------MYB46(1)                                     --------->ARR14(2)   --------->ANAC58                 <------MYB83                               --------->CCA1(2)   --------->ANAC46                <---------AtMYB61                          <---------ARR14(2)   --------->ANAC58               <---------MYB52(1)                   ---------->DOF2  ------->TEIL  --------->SPL7  ------->TEIL   <-------GAMYB                     --------->ANAC58  --------->ANAC46 =================bZIP_DOF      <---------ANAC46                   <----------ID1    --------->ANAC58 =================bZIP_DOF      <---------ANAC58                   --------->ANAC58  --------->ANAC58 =================bZIP_DOF      <---------ANAC58 --------->AtLEC2  --------->ANAC46--------->ANAC46 ->DOF2------>NtERF2      <---------YAB1    --------->YAB1<-----------GT1     --------->ARR14(2)    -   ctggtccgccacgtatgacgtatcgtttgtgattccgttggtagaatcgtaatgcaaaattatccaaacacgacaaagacgatacacacgaatttgcttg  2775600                                                                        <-----------GT1   --------->YAB1                                <---------ZAT18    <---------WOX13(1)  <---------ATHB51                             --------->ANAC46   --------->ATHB12 --AtLEC2                                      --------->ANAC58   -------->HAHB4 --ANAC58                      ----------->GT1 --------->ANAC58  <---------YAB1 --ANAC46                ---------->DOF2      ------->TEIL       <---------ATHB12 --ANAC58        <----------DOF2     --------->AHL20(2) <------ZmHOX2a(1)    <----------DOF2 -------->YAB1 <-------TEIL  ---------->DOF2 <---------AtLEC2    --------->ICU4                   <--   aacaataataaacaaggttctttgaagaaaagaaagtaataaactatgcacggcactaggagtagaaatgattgaaaccctttaacaaattgaactcatc  2775700                                                        --------->ATHB12                                                       <---------AHL20(2)                     <---------ANAC55(2)          <---------YAB1          <---------------AGL15                     <---------ANAC46           <--------HAHB4            --------------->AGL15                    <---------TOE2(3)           <---------ICU4            <---------DAG2           --                   <---------DOF5.7(2)         <---------YAB1             <----------DOF2         <--   <---------HSFB2a(2)          <---------YAB1 --------->ICU4    <-----------HVH21              ----- ---------RAV1(1)  --------->MYB52(1)          <---------ATHB51 <----------DOF2             <--------   ttgttgccgaagttatacagataacgtatggaatatgaatgggtttgcgattattagtttattggactttcaggccctttttagagaaaattagtttcct  2775800                                                                                          <---------WOX13(1)                                                                                         <-----------                                                                                        --------->ATHB12                                                                                       --------->ICU4                                                                                    --------->ARR14(2)                                                                                 --------->ANAC58   --------->LBD16                                        --------------->AtSPL8 --------->ANAC55(2)  --------->LBD16                                         <---------------AtSPL3 --------->ANAC58  --------->ANAC46                                   --------->TOE2(3)           --------->ANAC46 --------->HSFB2a(2)                           ------>NtERF2                  <---------SPL7  <------ <---------HSFB2a(2)                           --------->PCF2               <---------------AtSPL8 ---->ZmHOX2a(1)                              <-----------TCP11(1)          <---------------AtSPL3 -------ALFIN1           <---------ALFIN1<------------CBF <---------------AtSPL8<---------LBD16 ->ZmHOX2a(1)   <----------DOF2    <---------PCF2    --------->TOE1(3)     <------------------SPL14*TSS ---GT1      ------>ZmHOX2a(1)     --------->PCF2 <---------ALFIN1   <-----------GT1<---------ARR14(2)   cctcccgaaatagtcctgcattatggaccacattatgggcccatattgaggcccaccttaatggtacttatatactattttgtacggaactgattgatag  2775900                                                                                   --------->GLK1(2)                                                                                  <---------GLK1(2)                      <---------ANAC58                                            --------->ARR14(2)       --------->ANAC58                                                   --------->DEAR3(1)       --------->ANAC58                                  <<<<<<<<<<<<<<<<<LFY     <---------ARR14(2) -CBF <---------LBD16 <---------ANAC58                   --------->YAB1  --------->ATERF1(1)      --- ---WOX13(1)         ---------->ID1              <----------ID1          ----------->RAV1(2)    <----   acattagacacggagacattgttgtcgttcttcgcagacatttcgattttgaagacaaatcacaatgggagaagcgcctgcccagattccgacgagtttc  2776000                                           ------>MYB46(1)                                         --------->TOE1(2)                                       <---------ARR11(3)                                 <-----------HVH21                                --------->O2                                --------->bZIP60(2)                            <---------RAP2.6(3)                                 <---------ANAC46                            ------>NtERF2--------->TOE2(2)                      --------->ANAC55(2)                           --------->DEAR3(1)                            <---------YAB1                           <---------ATERF1(2)                       --------->O2                           --------->RAP2.6(2)                       <---------O2             <---------ANAC58--------->ATERF1(1)                     --------->TGA1a     --------->ZAT2       --------->RAP2.3(1)            <---------ARR14(2)     <---------ANAC55(1)   <-------PIF5           --------->ATERF1(1)  <------ZmHOX2a(2)     <---------TGA1a               --   ------->PIF5          ------>NtERF2 --------->ARR11(3)<---------GLK1(2)      <---------ANAC58   <- --->NtERF2  <---------ANAC58<------NtERF2 ------>MYB83  --------->ARR14(2)     <---------ANAC58<---- -----RAP2.6(2)          <---------ATERF1(1)  <-----------HVH21  <-----------HVH21  <---------CCA1(2)   ggccacgagcttagggcttgtcttcgatgccgcctcgtcaagacctacgatcaggtctggattctcttgtcacttgtgatttgcgtgtttcttctcttgc  2776100          <---------MYB59          --------------->AGL15          <---------------AGL15                                                            ------->TEIL         ----------------->AG                                                           --------->ANAC58         <-----------------AGL1                                                         --------->ANAC46         ----------------->AGL1           <---------HSFB2a(2)                           --------->ANAC58 --------->AHL20(1)                       --------->HSFB2a(2)                          ------->TEIL <---------AHL20(1)                      <---------LBD16                            <---------YAB1 --------->ARR11(3)                    --------->GLK1(2)                          ------------------- <---------ARR11(3)                   <---------GLK1(2)                           --------->YAB1 ------->ARR14(2)                     --------->ARR14(2)    ============================HOX2a_HOX2a --------ARR14(2)         ----------->RAV1(1)               <----------DOF2      <------ZmHOX2a(2) -----ANAC46 --------->GLK1(2)        <---------ARR14(2)    ------>ZmHOX2a(1)   --------->ARR11(3)   gaatattttttgcctaatctggtttctccaacagtttagggattctggatgcgagaactgtcctttcttcaaaatagaagacgatcatgaacgcatcgtc  2776200                                            ------>ZmHOX2a(1)                                           --------->TOE2(3)                                          <---------ICU4                                        <---------ARR14(2)               --------->TOE2(3)        --------->ARR14(2)    --------->ANAC46    --------->REM1(1)        <---------ANAC58               <---------AtLEC2                   ------  <-----------GT1            <---------ANAC46             <-----------GT1                  <---------ANAC58 -->WRI1------->GAMYB        <---------ANAC58   <----------DOF2                            <---------ANAC58   gatgttacaactcccaacttcaatgggtatggcttaaattcgaatccttactttgaaaatttacatggcactgttcataagtctgtctctcgtacttgtc  2776300                                     <---------AHL20(2)                     <---------MYB46(3)                                    --------->AHL20(2)                      <------MYB46(1)                                 --------->ATHB12                           <------MYB83                                --------->ICU4          --------->ATHB12   <---------AtMYB61                                <---------YAB1         --------->ICU4   <-----------RAV1(1) ---->ID1       ------->TEIL --------->ICU4            <---------YAB1  <---------YAB1   gttacattgaaatttctgaacctagtctatacttatgattaaatcgtatagtctatacttattgagaagacttattgttggtcgctaatctctcgttttt  2776400  Previous    Next  AGI:  At5g08565.1    Description:  positive transcription elongation factor/ zinc ion binding. Identical to Transcription elongation factor SPT4 homolog 1 [Arabidopsis Thaliana] (GB:Q8LCQ3;GB:Q29PX1); similar to SPT42 (SPT4 HOMOLOG 2), positive transcription elongation factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G63670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65978.1); contains InterPro domain Transcription initiation Spt4-like (InterPro:IPR016046); contains InterPro domain Transcription initiation Spt4; (InterPro:IPR009287) Range:  from: 2775899    to: 2777401    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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