Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------TOE2(3)                                                        ------>ZmHOX2a(2)                                                       <------ZmHOX2a(2)                                                    <---------HSFC1(2)                                                    --------->HSFB2a(1)                                                    <---------HSFB2a(1)                                                    --------->HSFC1(2)                                             ------>MYB83 --------->LBD16                                             ------>MYB46(1)     <---------YAB1                                             -------->P--------->GLK1(1)                      --------->ANAC46 <---------ZAT14--------->ARR14(2)                      --------->ANAC58 <---------ZAT18--------->ARR11(3)                 --------->YAB1        --------->ZAT14<---------ARR11(3)            <----------ID1 <-      <-----------ARR10 --------->ANAC46 ------->TEIL<------ZmHOX2a(1)    --------->At5g28300-------- ------->At4g35610    --------->ANAC58 --------->ZAT18<---------ARR14(2) ----------->GT1    ---------   cagtagcaaaactactcaataaacacacaaaattgacacagtgcacctacaagaaggatccccaaataagattagcagtaacaaaaaaaacaaatcgtca  2774300                                                          <------ZmHOX2a(2)                                                          ================HOX2a_HOX2a                                                         <---------ARR11(3)    <---------ICU4                                   --------->ZAT6                ----------->GT1    --------->YAB1                                 <-----------GT1               ----------->GT1   <---------YAB1                              --------->WOX13(1)              --------->DAG2 <---------ICU4                              =============================HOX2a_HOX2a --------->YAB1           <------ZmHOX2a(1) --------->ARR11(3)               ---------->DOF2 --------ARR11(3)         ==========================HOX2a_HOX2a            --------->YAB1         <-- ->TOE2(3)   --------->AHL20(2)             <---------ARR11(3)     <------ZmHOX2a(1)            ----- -->GT1    --------->TOE2(3)<------ZmHOX2a(2)<------ZmHOX2a(2)    <----------ID1 <----------ID1<-----   aaatcatcatcaaacttaaatagaagaaggatcacttggggatgaagatcaattaacacgatctaagaaggacaaaatcaaaagggagaaaaatccaatc  2774400                                                                             --------->LBD16                                                                        --------->MYB46(3)          --------->ANAC58                                           <------ZmHOX2a(1)   ------>MYB83                                                    <---------TOE2(3)---------->DOF2   ------>MYB46(1)       <---------TOE1(3)                 ----------->GT1   --------->ANAC58 <---------MYB59         --------->DAG2  --------->At4g35610  --------->ATHB12--------->LBD16 ---------GT1            <---------TOE2(3)         ---------->DOF2 <---------ANAC55(2) ---->YAB1--------->ANAC58  --------->ALFIN1 ---------->DOF2 <---------YAB1  --------->ANAC58 ----ATHB12         --------->LBD16      <---------At4g35610 --------->ICU4 <---------LBD16   ttaccaaataagaagcaaaacccagataaggtttggcgatggcagaagaaagagaaagagatagtgattaaggaacagcccggaaacaaaggagggaagg  2774500                                                                           ----------->GT1                                                                  ---------->DOF2                                                               --------->LBD16 <---------DOF5.7(2)                                                              --------->HSFB2a(2)                             <------ZmHOX2a(1)                <---------HSFC1(1)                         --------->ALFIN1                     --------->HSFC1(1)                  <------ZmHOX2a(1)                           <---------HSFB2a(2)         ---------->DOF2                <---------TOE2(3)      ---------->DOF2       <---------LBD16--------->TOE2(3)             --------->CCA1(2)   <---------YAB1            --------->ARR14(2)  ---------->DOF2     <----------DOF2    <-----------HVH21                  <---------ARR14(2)--------->DOF5.7(2)   aagaccgctatagagatttaggaagcggtgaggagatgatagaaagagagagagagagcaagttctggaaaagagaagcgttaaagaagatgaaaaggag  2774600                                                                          <---------At4g35610                                                                   <---------ANAC46                                                                   --------->O2                                                                   <---------ANAC58                                                                   --------->ALFIN1                                                                   <---------bZIP60(2)                                                                   <---------O2  --------->ANAC58                                                                   <---------TGA1a                                                                   <---------ANAC58                                        --------->ANAC58       --------->At4g35610                                        --------->ANAC58       <------NtERF2     --------->ANAC46                                  ---------->DOF2              <---------At4g35610                                  ===========================================bZIP_DOF                              --------->YAB1            --------->MYB52(1)--------->At4g35610                             <---------YAB1            ---------->DOF2   *TSS    --------->ANAC58  --                ----------->GT1 <---------YAB1         ======================bZIP_DOF              --             ---------->DOF2--------->AHL20(2)      --------->ANAC58 --------->ALFIN1              <-          --------->YAB1    --------->AHL20(1)      --------->ANAC58 <------NtERF2                 <-   agagagactcaataagaaaggcaaaacaaatattataaaagaaggcaatagaagaagcaaagggcagaggcgtggctgatcacaggctactctcgatcta  2774700               <---------ARR11(3)               --------->ARR11(3)                                                               -----               --------->GLK1(2)                                   <---------TOE2(3)         --------         ----------->RAV1(1)             --------->ZAT6        --------->TOE2(3)             -------- ------->AHL20(1)              <----------DOF2         <-----------GT1        <---------ICU4--------- ------->ARR11(3)             --------->TOE2(3)    <----------DOF2--------->AHL20(2)        <-------- --------AHL20(1)           <-----------GT1     <---------AHL20(2)--------->YAB1      --------->AHL20(2) --------AHL20(2)       ------->TEIL   <-----------GT1<---------CCA1(2)   <---------YAB1   <-------TEIL   atatatagtcccaacaaaatcttatgcattttcctttacatttactctattttcttttatcttcacattaatatttctgatacttacttaaaatacgtta  2774800                              --------->MYB52(1)     <------NtERF2     --------->ANAC58    <-----------HVH21  --------->ANAC46   --------->ALFIN1    --------->ANAC58 ----->DOF2          --------->MYB52(1)                                      -------->HAHB4 ->TOE2(3)        <------ZmHOX2a(2)                                          --------->ATHB12 ->TOE1(3)      --------->At4g35610                      --------->HSFB2a(2)<---------ATHB12 -->GT1      --------->At4g35610     --------->AHL20(2)  <---------HSFB2a(2)<---------YAB1      ----- -ANAC55(2)  <---------At4g35610 ----------->GT1   <---------ANAC46         --------->ICU4   --------   aaacggtgtcgaatcagcagatcaaacggaacaagcggaataaatataagttttcgtttatagaaaactagttttgaaatgattgtagataaacaaaaca  2774900                                                                          --------->YAB1                                                                       <-----------GT1                                                                      <---------AHL20(2)                                                                      --------->AHL20(2)                                                               ----------->GT1--------->AHL20(2)                                                               --------->ANAC58                                                  <-------GAMYB--------->ANAC58                                                  <---------ANAC58   --------->AHL20(2)      <---------AHL20(2)                          <---------ANAC58   <---------AHL20(2)   ----------->GT1                               <------MYB46(1) --------->AHL20(2)  --------->DAG2  <---------GLK1(1)              <------MYB83  --------->ANAC46                 ----- ---------->DOF2 --------->ARR11(3)      <------ZmHOX2a(1)     --------->ANAC55(1)      <------NtERF2 ------>GT1     --------->YAB1        <---------HSFB2a(2)      <---------ANAC55(2)      ------>NtERF2 ->MYB52(1)    <---------ATHB12       --------->HSFB2a(2)      --------->ANAC55(2)     --------->ZAT18   gaaaaaagttaatttcaatgatatcggtaatgctattcttcgaggattatttggttgtgttcaacaagtaatttaatcatatatataggcggactagaga  2775000                                <------MYB46(1)                                                    <-                                <------MYB83                                                      <--                          <---------LBD16                                                         <--                         <---------ANAC46                                                         ---                       <---------ANAC58                                                          ----                       <------MYB83                                <<<<<<<<<RAP2.2               ----                       <---------ANAC58                           <---------TOE2(3)  --------->ANAC55(2)      <----------DOF2  <------MYB46(1)                 <---------ANAC58              <---------ANAC55(2) ----->DOF2           <-----------RAV1(1)              <---------ANAC58       <---------CCA1(2) <----   aaggaatgctttgaaaacaaatatttggtgcggaaggtatgtgatttggcagaattgtcttgtgtttttagattgtgttcaaatcttatgtaacataggc  2775100        --------->TOE2(3)                    --------->ARR11(3) <----------DOF2                             --------->AHL20(1) -----NtERF2                                 <---------AHL20(1) ----NtERF2                                  <---------AHL20(2) -------RAP2.6(3)                  --------->ANAC58 --->NtERF2                        --------->ANAC58 ----->DEAR3(1)               <-----------HVH21     <---------GLK1(1)                         <------ ----->RAP2.6(2)      ---------->DOF2     --------->AHL20(2)  ---------->DOF2         <---------TOE1(3) -----RAP2.6(2)    ------>NtERF2 ---------->DOF2    --------->GLK1(1)                 <---------TOE2(3)   cgcctttatacatcaatacgatgccaaagaaatgtcaaagcaaataatatatagaaatccaactaaaagcttggaagaaacaaatattaagggtttcttt  2775200  Previous    Next  AGI:  At5g08560.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G43920.1); similar to hypothetical protein OsI_006684 [Oryza sativa (indica cultivar-group)] (GB:EAY85451.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65977.1); similar to hypothetical protein OsJ_006154 [Oryza sativa (japonica cultivar-group)] (GB:EAZ22671.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains InterPro doma Range:  from: 2770875    to: 2774673    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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