Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                        --------->ATHB12                                                                                        <---------ICU4                                                                                        -------->HAHB4                                                  <-------GAMYB                         --------->YAB1                                                  <---------ANAC58                     --------->ICU4                                                  <---------ANAC58                     <---------ATHB12 ----AHL20(2)                                    <---------MYB46(3)                    <---------YAB1 --->AHL20(2)                               <----------DOF2                           <---------TOE2(3) ---DOF2                                 <---------ARR11(3) <------MYB46(1)          --------->YAB1 - ->TOE2(3)                               --------->ARR11(3) <------MYB83       ------->TEIL       <-- -GT1              <---------YAB1     <----------DOF2 <---------YAB1        --------->ALFIN1      <--   attttgtagacttgtagtagtactattgcatatttcttcgcattatctttttggttgtgatttggttccaatttgaatgtggacctctaatgattacatt  2735500   <---------DOF5.7(2) --------->DOF5.7(2)                                 <----------DOF2 <---------MYB52(1)                               --------->GLK1(2) -------->TOE2(3) --------->ANAC46               <---------GLK1(2) -------->TOE1(3)<-------TEIL               ----------->GT1               <-----------GT1     <------ -------YAB1   <---------ARR14(2)    --------->HSFB2a(2)        <---------YAB1   <---------AHL20(2) -------TOE2(3)--------->ARR14(2)    <---------HSFB2a(2)     <---------YAB1     --------->AHL20(2) --   atcgttaactgcaaacatatacgtagaaaatgagtcgatcgagaaattgtagaatctttttctattattcttggtttcacaaattaatggtagagacttt  2735600                                        <------------CBF                           <------------CBF                                                   <------                   <-----------RAV1(1)  --------->ARR14(2)                                    <------                   <---------REM1(1)    <---------ARR14(2)                            <---------AtLEC2                  --------->ARR11(3)   <------NtERF2                                  <---------ANAC58         <---------bZIP60(1)         <---------ANAC58                                 <---------ANAC46   XXXXXXXXXXXXXXXXXXXX>MIR823       <---------ANAC58                                 <---------ANAC58 ----DOF2--------->bZIP60(1)         <---------ANAC46                            <-----------RAV1(1)< ------->AtLEC2   <---------ARR11(3)<---------LBD16          ---------->ID1  --------->AHL20(2) <----   catgcatagtgatgacataagatgttgcatattgatatggcggattgttcatagtttttttttgtttttttttatgacataaaatgttgcatgttggcat  2735700   ------>NtERF2  <---------ZAT18  --------->LBD16                                         <---------ICU4  --------->ZAT18                                      --------->ANAC46     --------->ANAC55(2) <---------ANAC58                                     <-------TEIL          <---------ANAC55(2) <---------ANAC46                                    <-----------GT1        <---------ANAC55(1) <---------ANAC58                              ----------->GT1            <-----------GT1           - ---ANAC58             <---------YAB1     --------->ANAC55(2)     <----------DOF2                   - ---ANAC58          --------->ICU4        <---------ANAC55(2)   ===================================== ---------LBD16     <---------YAB1       <---------------AtSPL8 --------------->AGL15               < -------RAV1(1) <---------GLK1(2)        --------------->AtSPL8 <---------------AGL15           -----   gttgcggactaattcatagattattattagtccatagatgtattatgtactgtatatacatcatttctcttttttgttacatgtttgaacttaaacaaaa  2735800                                                            <------------CBF                                                           -------->ATHB1                                                           -------->HAHB4                                                           <---------ICU4                                                           <---------AHL20(2)                                                           --------->ATHB12                                                           --------->ATHB51                                                          --------->ICU4       --------->MYB52(1)                                 <---------ATHB51     <<<<<<<<<<AtMYB44                                    <---------YAB1     <---------MYB59      <---------------AGL15         --------->YAB1     <------------MYB.PH3(2)      <------ZmHOX2a(1)    <---------YAB1     <---------MYB111(1)  ------------>CBF             --------->AHL20(2)     <---------MYB46(2)  <-----------------AG--------->ANAC58     <---------MYB52(2)  ----------------->AGL2        <---------AHL20(2) -------->ANAC55(2)      ----------------->AGL1       --------->AHL20(2)                        ----- ---------->GT1          <-----------------AGL1       <---------AHL20(1)          <------------------ =========================================MADS_MADS   --------->AHL20(1)          ------------>CBF ---------ANAC55(2) ---------->DOF2          --------->ANAC58                    --------->ANAC58 ---->YAB1     ----------->GT1  --------->MYB59      --------->YAB1              --------->ANAC58   ataagtaactaactataggtttaaaaggcccaattaggaaattagacaggcccaaatataattattgaagcccaaaatgaggctagcaattcgaacaaaa  2735900                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               ------                                                         <---------TGA1a                      <------                                                         <---------bZIP60(1)                 <-------                                                         --------->bZIP60(1)                 --------                                                         <---------ANAC46                   <--------                                                         --------->TGA1a                    <------NtERF2                                                         ==============================MYC_MYB------>NtERF2                                                         --------->O2                      <---------RAP2.3(1)                                                       ------>NtERF2                       <---------ATERF1(1)                                                      --------->DEAR3(1)                   ------>NtERF2                                                      ----------->HVH21                   --------->DEAR3(1)                                                     --------->SPL7                      --------->ATERF1(1)                                                    ------>NtERF2                       <-----------HVH21                                                    <---------ATERF1(1)             <-----------GT1--                                                   --------->ANAC46              >>>>>>>>>GT-1-------                                                   ----------->HVH21           <-------GAMYB---------                                                   --------->LBD16            ----------->GT1--------                                                   --------->DEAR3(1)     --------->ALFIN1<---------DEAR3(1)                                          <---------ICU4 --------->ANAC55(2)  --------->MYB55(2)<----                            --------->ANAC58 <---------ICU4--------->ALFIN1   <---------MYB46(3)<---- --------->CCA1(2) ------------>CBF       --------->YAB1 <---------O2     <---------DEAR3(1)--------- ----->DOF2  <------------CBF            <---------ATHB12<---------ANAC55(2) --------->ALFIN1<------- ---WRI1  <------ZmHOX2a(1) --------->ANAC58<---------YAB1 ----------->HVH21 <---------AtMYB61<------   aagataagcttaggaaattgtaccaatgtctcgcaatcggcaaatcatcatccccgacgacgtgatggaaacagaagcggtggttaataccgtcgccggc  2736000 ------->WRKY38(1) ------>ATERF1(1) ----NtERF2 --------HVH21 ------ATERF1(1) -->NtERF2 ---->DEAR3(1) -NtERF2<---------ANAC58 --->ATERF1(1) --->RAP2.3(1)                               <<<<<<<<<GATA-1                                      --- ---ATERF1(1)                       ------->MYC3         ------>ZmHOX2a(1)                        --- --DEAR3(1)                         <-------MYC2        <---------ALFIN1                         <--- ->ATERF1(2)                        ------->MYC2     <---------ARR14(2)                          <--- -LBD16 <---------ANAC58            <-------MYC3     --------->ARR14(2)                         ----- ------->ETT(2)                    --------->ANAC46 --------->ZAT2                              ----- -->LBD16                          --------->ANAC58 <---------At4g35610                         <---- >ATERF1(1)                        --------->ANAC58 <---------ZAT2                            <------ ->DEAR3(1)                      <---------ALFIN1   --------->At4g35610                   --------->ANAC58 -----DEAR3(1)                  --------->ZAT14   --------->MYB46(3)                  <---------ZAT2 -----ANAC46                    <---------REM1(2) <---------ALFIN1                    --------->ZAT2 >RAP2.3(1)                 <---------ICU4   <<<<<<<<<GATA-4                       <---------ETT(2) --ATERF1(2)             --------->WOX13(1)  <<<<<<<<<GATA-3           <---------At4g35610--------->ANAC58 ---RAP2.3(1)         <-----------HVH21      <<<<<<<<<GATA-2  ------>ZmHOX2a(1)  <-----------HVH21---   gtcgactgtttcgtctcactccctcgtcaattactacacgcgcttcaatccaccagctcctctcctctccctccgcttctccctgtcgagctacgctccg  2736100              <---------At4g35610          <-----------HVH21         <------MYB46(1)         <------MYB83        <---------AtMYB61       <---------MYB52(1) --------->LBD16      <-------GAMYB      <---------RAP2.6(2)     <---------MYB46(3) --------->SPL7  --------->DEAR3(1)    <---------LBD16 --------->DEAR3(2)  <------MYB46(1) --------->MYB46(3)  <------MYB83 ------>WRKY12<-------GAMYB ------>WRKY38(1) <---------ANAC58 --------HVH21--------->At4g35610 ------MYB52(1)   <---------AtLEC2                 <------ZmHOX2a(2) ---->At4g35610   <---------ANAC46       =================HOX2a_HOX2a ---->LBD16  --------->MYB52(2)          ------>ZmHOX2a(1) -----At4g35610   <---------ANAC58    ====================HOX2a_HOX2a                         ------- ---LBD16<---------MYB46(3)           ------>ZmHOX2a(1)                                       <------ -------->HVH21<---------MYB52(1)    <---------ALFIN1 <---------TOE2(3)          ------>ZmHOX2a(2)   gtgaccgccgttggtcagttgcttggtccggctctagctcctcctcttctgcgatcgaggtttctatccctctctatatttgatccagtttattcaaatc  2736200                                                                                            ---------                                                                                           <---------ANAC46                                                                                          <---------LBD16                                                                                    >>>>>>>>>TAC1                                                                             ------>ZmHOX2a(2)           <----------DOF2 <---------YAB1                                   <------ZmHOX2a(2)   ----- -->ARR14(2)           --------->GLK1(1)                                   --------->ARR11(3)   ----- ---ARR14(2)           <---------GLK1(1)                   <---------YAB1  <---------ARR11(3) -------   cagtaatcgactactttggttttggaattctgattactcttacattcccctgtttttgattttgattcttctaataagatcgctcgagtgtttgcggaaa  2736300          --------->LBD16          <---------SPL7        <---------ANAC58    <-------GAMYB               <---------ANAC46   <---------ANAC58             <---------ANAC58   <---------ANAC58   <---------MYB46(3)                              ------->GAMYB                 - >LBD16 <---------LBD16    <---------TOE1(3)                         --------->MYB46(3)             < ---->ANAC58  <------MYB46(1)  <-------TEIL                  --------->TOE2(3)                      - ---->ANAC58  <------MYB83 <---------TOE2(3)     --------->ZAT18     --------->ZAT6           <------ --->DOF2<---------ANAC46 ---------->DOF2  ------>ZmHOX2a(1) <----------DOF2             <---------At4g35610   gcatttcgttgccggatggtacagttgttaaagttcgtgttcttcctaatgtgcccaaggctactttagtaacagtcgaaccagagactgaagatgactg  2736400  Previous    Next  AGI:  At5g08460.1    Description:  GDSL-motif lipase/hydrolase family protein. similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G71250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67098.1); contains InterPro domain Lipase, GDSL; (InterPro:IPR001087) Range:  from: 2733221    to: 2735456    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g08470.1    Description:  PEX1 (PEROXISOME 1); ATPase. similar to (Cell division control protein 48 homolog E), ATPase [Arabidopsis thaliana] (TAIR:AT5G03340.1); similar to putative peroxisome biogenesis protein PEX1 [Oryza sativa (japonica cultivar-group)] (GB:BAD09074.1); similar to hypothetical protein OsI_029202 [Oryza sativa (indica cultivar-group)] (GB:EAZ07970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47095.1); contains InterPro domain Peroxisome biogenesis factor 1, N-terminal; (InterPro:IPR015342); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain Aspartate decarboxylase-like fold; (InterPro:IPR009 Range:  from: 2735926    to: 2743057    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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