Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------ARR14(2)                        --------->ARR14(2)                 ------->GAMYB       <---------ARR11(3)                                                          <-------TEIL  ----       --------->AHL20(1)                  <---------ANAC58                       --------->CCA1(2)       --------->ARR11(3)      --------->ANAC58                                  <---------ARR11(3)       <---------AHL20(1)      --------->ANAC46<---------ANAC58                  --------->ARR14(2)     ----------->ARR10 <------ZmHOX2a(1)   <---------ANAC58                      <---------ARR14(2) --->DOF2  <-----------GT1     --------->ANAC58<---------ANAC58         ---------->DOF2   <----------DOF2   gttggccaagatattacaacaggcaggattcacacacaatctctcgcttgcttcgctagactacttgtatgcataaaagagaagatacatgtctttgaaa  2716300                          <---------WOX13(1)                        <---------ICU4                       <---------YAB1                     --------->YAB1                   ------->TEIL                --------->ANAC55(2)                <---------ANAC55(2)              --------->CCA1(2)             --------->ARR14(2)             <---------ARR14(2)             <---------ARR11(3)                                                                 -----             --------->ARR11(3)              >>>>>>>>>>>>>>>>>LFY                              <-----           --------->ANAC58         <---------At4g35610                            ------>ZmHOX2a(1)  <XXXXXXXXXXXXXXXXXXXXMIR863-5P    --------->At4g35610                           --------->TOE2(3) ----->ICU4--------->ANAC58<-----------GT1   <<<<<<<<<<<<<<<<<LFY            --------->ALFIN1  ------   tgttgatattagcaagatatgtatcgtaattgccattctgcttcagtttccattggagactgaatgggagttagaaggggtgttccttattcgacattta  2716400                                                                                 <---------ARR11(3)                                                                         --------->ATHB12                                                                      <---------ANAC58    <---------MYB52(1)                     <----------DOF2                                  <---------ANAC58   <-------GAMYB                  --------->ZAT6                               ---------->DOF2   --------->ARR11(3)           --------->ICU4          <----------DOF2           --------->MYB46(3)  --------->AHL20(1) ----->DOF2<---------YAB1--------->WOX13(1)              ------>ZmHOX2a(2)    <---------TOE2(3) ----AHL20(2)   <-----------GT1=================================HOX2a_HOX2a  ---------->DOF2 <------- --->AHL20(2) <---------YAB1   <------ZmHOX2a(1)   --------->CCA1(2)<---------YAB1      <---------ANAC46   aagaagaggtgagattattaacactttcaattaggagctttactcttacagagatttgatctaaccaaagatgcttgattaaagatattgccgttgatgt  2716500                                                                       ------->MYC2                                                                       <-------PIF5                                                                       ------->MYC3                                                                       ------->PIF5                                                                      <---------ANAC55(2)                                                                      <---------ANAC46                                                                      --------->TGA1a            ----                                                                      <---------O2               ----                                                                      <---------TGA1a            <---                                   --------->At5g28300                ===============================                                  ----------->GT1                 <------ZmHOX2a(1)             -----                                 --------->ZAT6           XXXXXXXXXXXXXXXXXXXX>MIR164C        -------                               <-----------GT1          ----------->GT1<-------MYC3           <------    ----------->GT1       <---------TOE2(3)            ----------->GT1--------->O2<---------At4g35610   <---------HSFB2a(2)    <---------YAB1               --------->ANAC58<-------MYC4           <------   --------->HSFB2a(2)  <---------AHL20(2)             --------->ANAC58<-------MYC2           <------ --TOE2(3)  ---------->DOF2 --------->YAB1           --------->MYB52(1)------->MYC4         <--------   tttttctggtaaaaaaaagaagagaattaatattaactgtaaaaaacacaaaaaaaaacggaaaaataggacacgtggaattggtgctgatgttttacct  2716600     <--------P   <---------MYB46(3) -->MYB46(1) -->MYB83 --------HVH21 =============MYC_MYB                ----------->RAV1(2) ---->ANAC46          <---------ALFIN1                                                             <- ---->RAV1(2)         --------->DEAR3(1)                  <----------DOF2       <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---ANAC58            --------->AtMYB61           <---------ZAT18              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---At4g35610        --------->MYB46(3)     --------->GLK1(2)              ------>ZmHOX2a(1)      <-- ---ANAC58 <---------ALFIN1          <------NtERF2--------->ZAT14          <----------DOF2     <----- ---GT1   ----------->HVH21   ---------->DOF2 --------->YAB1  <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   gccactggttgcctcacagcctcaccacctctcaaagtcgcctgagaatcagagctctctcttttctctctcccatcctttttttttttttttttttttt  2716700               <----------DOF2                                                                    ---              <---------ANAC58                                                                    <--        <----------DOF2         <---------HSFB2a(2)                         <----------DOF2   <------ *TSS   --------------------->WRI1                                 <------NtERF2              <------ <---------ANAC46               --------->HSFB2a(2)               --------->MYB55(2)         <------- --------->ETT(1)         <---------ARR11(3)                      ------>NtERF2              <------- ----------HVH21     <---------MYB52(1)                           <---------MYB46(3)     <----------DOF2 ---------RAV1(1)   --------->LBD16     <----------ID1           <---------DEAR3(1) <---------ANAC58 ------GT1    <---------ANAC58  <---------LBD16               <---------DEAR3(1)    <---------ANAC58   ctgtcgggttctttgtgctttccgtcaatttcttctcggagagcgactaatttcgacgattagctcggtggctgttttctttcaattcgtgcatttcgtc  2716800                             --------->O2                             --------->ANAC58                             --------->ANAC58                             <---------O2                             --------->ANAC46                            <---------LBD16  <-----------GT1          <---------ALFIN1                                          <---------ZAT14 ------>At4g35610  --------->HSFC1(2)                                                --------->ZAT14 -------At4g35610  <---------HSFC1(2)             <------MYB83                   --------->ATHB12 -----HVH21        <---------HSFB2a(1)<---------DAG2       --------->GLK1(2)  <----------DOF2 -----TGA1         --------->HSFB2a(1)<----------DOF2     --------->YAB1     <---------DAG2 --ANAC58    <---------TOE1(3)     ------>NtERF2  <------MYB46(1)      <---------ARR14(2) --ANAC58    <---------TOE2(3) ----------->HVH21 --------->MYB59       --------->ARR14(2)      ------   agattaacaggttttaagggaaatttcttccacgcgacgacttttttttgtttggttcaagaatcagtaaatgtattcgcctttcattgcagtagtaggg  2716900                                                       --------->AHL20(2)                                                       <---------AHL20(2)                                                     --------->CCA1(2)                                                    <---------ARR11(3)                                          <---------TOE2(2)                              <-------GAMYB                               <-----------GT1      --------->ARR11(3)     <---------ANAC46 ----->GT1          --------->ALFIN1    ------>ZmHOX2a(1)        <-------GAMYB --------->CCA1(2)   tttatagtttcttaagctagaggtgtgagtttttttcttctccttaggttttgagatataaattttgggttgtaatgggggatataacttgggttgaaga  2717000                               ---------->DOF2                          --------->HSFB2a(2)                           --------->DAG2                               <---------HSFB2a(2)   <------                          ---------->DOF2                          <---------ANAC58          <-------                        <------ZmHOX2a(1)                          <---------ANAC58          --------                     <---------HSFB2a(2)                        --------->ALFIN1            <--------                     --------->HSFB2a(2) <---------MYB59      <------ZmHOX2a(1)  --------->ATHB12   gggtaatggctctgcgacttcttcgaggaaaaggaaagcgagacctaaacgattcgaatttgtaggatggggttcgagacaactcattgagtttctacac  2717100                                                                                         ------>ZmHOX2a(1)                                                                                       <---------HSFC1(2)                                                                                       <---------HSFB2a(1)                                                                                       ------>ZmHOX2a(2)                                                                                       --------->HSFC1(2)                                                                                      <------ZmHOX2a(2)                                                                                     <---------ARR14(2)                                                                                     --------->ARR11(3)                                                                                     --------->AGP1                                                                                     <---------ARR11(3)                          ------>ZmHOX2a(2)                                    <----------DOF2      ---------->DOF2   --------->ARR11(3)     --------->ZAT6               <---------ARR11(3) ---ALFIN1              <---------ARR11(3)--------->MYB52(2)                --------->ARR11(3)  ----- --ZAT14  --------->ARR11(3)          <---------YAB1                       <------MYB83--------->HSFB2a(1) ->ZAT14  <---------ARR11(3)        --------->YAB1                         <------MYB46(1)   <------- ---GT1   <---------GLK1(2)        <---------YAB1                   ---------->DOF2  --------->ARR14(2)   tctcttggtaaagatacttcagaaatgatctctcgttatgatgttagtgacactattgctaagtatatttcaaaggaaggtcttttagatccttccaata  2717200  Previous    Next  AGI:  At5g08430.1    Description:  SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein / GYF domain-containing protein. Identical to Uncharacterized protein At5g08430 [Arabidopsis Thaliana] (GB:Q9FT92); similar to zinc finger (C3HC4 type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G63700.1); similar to hypothetical protein OsJ_017826 [Oryza sativa (japonica cultivar-group)] (GB:EAZ34343.1); similar to hypothetical protein OsI_019323 [Oryza sativa (indica cultivar-group)] (GB:EAY98090.1); similar to Os01g0884500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045018.1); contains InterPro domain Plus-3 (InterPro:IPR004343); contain Range:  from: 2716701    to: 2720213    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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